RNA–Protein interactions for RNA: ENST00000495530.5

PTPRE-211, Transcript of protein tyrosine phosphatase, receptor type E, humanhuman

TSL 5

Gene PTPRE, Length 987 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRE-211ENST00000495530 NISCHQ9Y2I1 1504 aa34.05■■■■□ 3.04
PTPRE-211ENST00000495530 ABCC9O60706 1549 aa31.15■■■□□ 2.58
PTPRE-211ENST00000495530 CCDC180Q9P1Z9 1646 aa30.26■■■□□ 2.44
PTPRE-211ENST00000495530 DNAJC5BQ9UF47 199 aa30.1■■■□□ 2.41
PTPRE-211ENST00000495530 RB1CC1Q8TDY2 1594 aa29.28■■■□□ 2.28
PTPRE-211ENST00000495530 NACADO15069 1562 aa28.81■■■□□ 2.2
PTPRE-211ENST00000495530 PABPN1Q86U42 306 aaKnown RBP eCLIP28.77■■■□□ 2.2
PTPRE-211ENST00000495530 UNC13AQ9UPW8 1703 aa28.68■■■□□ 2.18
PTPRE-211ENST00000495530 DNAJC5Q9H3Z4 198 aa28.51■■■□□ 2.15
PTPRE-211ENST00000495530 ZCCHC6Q5VYS8 1495 aaKnown RBP28.46■■■□□ 2.15
PTPRE-211ENST00000495530 BICRAQ9NZM4 1560 aa28.42■■■□□ 2.14
PTPRE-211ENST00000495530 DCAF8L2P0C7V8 631 aa28.35■■■□□ 2.13
PTPRE-211ENST00000495530 DCAF1Q9Y4B6 1507 aa28.22■■■□□ 2.11
PTPRE-211ENST00000495530 CECR2Q9BXF3 1484 aa28.21■■■□□ 2.11
PTPRE-211ENST00000495530 CC2D2AQ9P2K1 1620 aa28.15■■■□□ 2.1
PTPRE-211ENST00000495530 MYO15BQ96JP2 1530 aa28.13■■■□□ 2.09
PTPRE-211ENST00000495530 AEBP2Q6ZN18 517 aaPredicted RBP28.05■■■□□ 2.08
PTPRE-211ENST00000495530 SHROOM4Q9ULL8 1493 aa28.01■■■□□ 2.07
PTPRE-211ENST00000495530 EIF4G1Q04637 1599 aaKnown RBP27.82■■■□□ 2.04
PTPRE-211ENST00000495530 SCRIBQ14160 1630 aa27.4■■□□□ 1.98
PTPRE-211ENST00000495530 CUX2O14529 1486 aa27.38■■□□□ 1.97
PTPRE-211ENST00000495530 ERCC6Q03468 1493 aa27.02■■□□□ 1.92
PTPRE-211ENST00000495530 TRIM41Q8WV44 630 aa26.78■■□□□ 1.88
PTPRE-211ENST00000495530 NCAPD3P42695 1498 aa26.56■■□□□ 1.84
PTPRE-211ENST00000495530 CHIC1Q5VXU3 224 aa26.55■■□□□ 1.84
PTPRE-211ENST00000495530 THOC2Q8NI27 1593 aaKnown RBP26.48■■□□□ 1.83
PTPRE-211ENST00000495530 NESP48681 1621 aa26.44■■□□□ 1.82
PTPRE-211ENST00000495530 BAZ1AQ9NRL2 1556 aaPredicted RBP26.36■■□□□ 1.81
PTPRE-211ENST00000495530 HMGXB3Q12766 1538 aa26.32■■□□□ 1.8
PTPRE-211ENST00000495530 ATAD2BQ9ULI0 1458 aa26.3■■□□□ 1.8
PTPRE-211ENST00000495530 SMARCA4P51532 1647 aa26.25■■□□□ 1.79
PTPRE-211ENST00000495530 SMARCA2P51531 1590 aa26.24■■□□□ 1.79
PTPRE-211ENST00000495530 MROH2BQ7Z745 1585 aa26.22■■□□□ 1.79
PTPRE-211ENST00000495530 LAMC3Q9Y6N6 1575 aa26.2■■□□□ 1.79
PTPRE-211ENST00000495530 RSF1Q96T23 1441 aaPredicted RBP26.2■■□□□ 1.78
PTPRE-211ENST00000495530 KIF21AQ7Z4S6 1674 aa26.18■■□□□ 1.78
PTPRE-211ENST00000495530 SUPT5HO00267 1087 aaKnown RBP26.1■■□□□ 1.77
PTPRE-211ENST00000495530 PDS5BQ9NTI5 1447 aa26.04■■□□□ 1.76
PTPRE-211ENST00000495530 BAZ1BQ9UIG0 1483 aaKnown RBP26.03■■□□□ 1.76
PTPRE-211ENST00000495530 PEG3Q9GZU2 1588 aa25.99■■□□□ 1.75
PTPRE-211ENST00000495530 WIZO95785 1651 aa25.94■■□□□ 1.74
PTPRE-211ENST00000495530 OSCARQ8IYS5 282 aa25.89■■□□□ 1.74
PTPRE-211ENST00000495530 MRC2Q9UBG0 1479 aa25.87■■□□□ 1.73
PTPRE-211ENST00000495530 WDR62O43379 1518 aa25.86■■□□□ 1.73
PTPRE-211ENST00000495530 TOP2AP11388 1531 aaKnown RBP25.73■■□□□ 1.71
PTPRE-211ENST00000495530 RIMBP3CA6NJZ7 1639 aa25.72■■□□□ 1.71
PTPRE-211ENST00000495530 RIMBP3BA6NNM3 1639 aa25.72■■□□□ 1.71
PTPRE-211ENST00000495530 RIMBP3Q9UFD9 1639 aa25.72■■□□□ 1.71
PTPRE-211ENST00000495530 CADPSQ9ULU8 1353 aa25.68■■□□□ 1.7
PTPRE-211ENST00000495530 CEP164Q9UPV0 1460 aa25.56■■□□□ 1.68
PTPRE-211ENST00000495530 ARHGEF11O15085 1522 aa25.5■■□□□ 1.67
PTPRE-211ENST00000495530 CCDC88BA6NC98 1476 aa25.47■■□□□ 1.67
PTPRE-211ENST00000495530 TRHP20396 242 aaPredicted RBP25.41■■□□□ 1.66
PTPRE-211ENST00000495530 FANCD2Q9BXW9 1451 aa25.4■■□□□ 1.66
PTPRE-211ENST00000495530 CYB5RLQ6IPT4 315 aa25.32■■□□□ 1.64
PTPRE-211ENST00000495530 URB2Q14146 1524 aaKnown RBP25.26■■□□□ 1.63
PTPRE-211ENST00000495530 CFTRP13569 1480 aa25.18■■□□□ 1.62
PTPRE-211ENST00000495530 ARAP1Q96P48 1450 aa25.15■■□□□ 1.62
PTPRE-211ENST00000495530 ZNF608Q9ULD9 1512 aaPredicted RBP25.09■■□□□ 1.61
PTPRE-211ENST00000495530 IFT140Q96RY7 1462 aa25.09■■□□□ 1.61
PTPRE-211ENST00000495530 CHD1O14646 1710 aa25.04■■□□□ 1.6
PTPRE-211ENST00000495530 PRDM2Q13029 1718 aa25■■□□□ 1.59
PTPRE-211ENST00000495530 EIF4G3O43432 1585 aaKnown RBP24.98■■□□□ 1.59
PTPRE-211ENST00000495530 TOPBP1Q92547 1522 aa24.81■■□□□ 1.56
PTPRE-211ENST00000495530 FBLN2P98095 1184 aa24.77■■□□□ 1.56
PTPRE-211ENST00000495530 ABCC8Q09428 1581 aa24.75■■□□□ 1.55
PTPRE-211ENST00000495530 AQRO60306 1485 aaKnown RBP eCLIP24.72■■□□□ 1.55
PTPRE-211ENST00000495530 TARBP1Q13395 1621 aaKnown RBP24.71■■□□□ 1.55
PTPRE-211ENST00000495530 WRNQ14191 1432 aaPredicted RBP eCLIP24.7■■□□□ 1.55
PTPRE-211ENST00000495530 CLASP1Q7Z460 1538 aa24.67■■□□□ 1.54
PTPRE-211ENST00000495530 DNMBPQ6XZF7 1577 aa24.66■■□□□ 1.54
PTPRE-211ENST00000495530 SYNJ1O43426 1573 aa24.59■■□□□ 1.53
PTPRE-211ENST00000495530 CUX1P39880 1505 aa24.56■■□□□ 1.52
PTPRE-211ENST00000495530 TOP2BQ02880 1626 aa24.53■■□□□ 1.52
PTPRE-211ENST00000495530 ILDR1Q86SU0 546 aaPredicted RBP24.51■■□□□ 1.51
PTPRE-211ENST00000495530 POLA1P09884 1462 aaPredicted RBP24.48■■□□□ 1.51
PTPRE-211ENST00000495530 BIVM-ERCC5R4GMW8 1640 aa24.48■■□□□ 1.51
PTPRE-211ENST00000495530 GAPVD1Q14C86 1478 aa24.47■■□□□ 1.51
PTPRE-211ENST00000495530 SNAPC4Q5SXM2 1469 aa24.47■■□□□ 1.51
PTPRE-211ENST00000495530 WDR97A6NE52 1622 aa24.45■■□□□ 1.5
PTPRE-211ENST00000495530 CHMP7Q8WUX9 453 aaPredicted RBP24.44■■□□□ 1.5
PTPRE-211ENST00000495530 MAGI1Q96QZ7 1491 aaPredicted RBP24.42■■□□□ 1.5
PTPRE-211ENST00000495530 FGD5Q6ZNL6 1462 aa24.4■■□□□ 1.5
PTPRE-211ENST00000495530 TDRD9Q8NDG6 1382 aaKnown RBP24.4■■□□□ 1.5
PTPRE-211ENST00000495530 RAD54L2Q9Y4B4 1467 aa24.37■■□□□ 1.49
PTPRE-211ENST00000495530 SOGA1O94964 1423 aa24.36■■□□□ 1.49
PTPRE-211ENST00000495530 SYNJ2O15056 1496 aa24.33■■□□□ 1.49
PTPRE-211ENST00000495530 KIF13AQ9H1H9 1805 aa24.33■■□□□ 1.48
PTPRE-211ENST00000495530 GRIN2BQ13224 1484 aa24.28■■□□□ 1.48
PTPRE-211ENST00000495530 ABCA10Q8WWZ4 1543 aa24.22■■□□□ 1.47
PTPRE-211ENST00000495530 PBRM1Q86U86 1689 aa24.19■■□□□ 1.46
PTPRE-211ENST00000495530 KIF27Q86VH2 1401 aa24.18■■□□□ 1.46
PTPRE-211ENST00000495530 ERCC6L2Q5T890 1561 aa24.16■■□□□ 1.46
PTPRE-211ENST00000495530 EEA1Q15075 1411 aa24.15■■□□□ 1.46
PTPRE-211ENST00000495530 KDM4FA0A1W2PPD8 638 aa24.13■■□□□ 1.45
PTPRE-211ENST00000495530 SENP3Q9H4L4 574 aaPredicted RBP24.09■■□□□ 1.45
PTPRE-211ENST00000495530 FAM9AQ8IZU1 332 aaPredicted RBP24.08■■□□□ 1.45
PTPRE-211ENST00000495530 CSRNP3Q8WYN3 585 aa24.06■■□□□ 1.44
PTPRE-211ENST00000495530 CEP170Q5SW79 1584 aa24.06■■□□□ 1.44
PTPRE-211ENST00000495530 RUSC2Q8N2Y8 1516 aa24.05■■□□□ 1.44
Retrieved 100 of 20,778 RNA–protein pairs in 137.4 ms