RNA–Protein interactions for RNA: ENST00000495515.1

HDAC6-235, Transcript of histone deacetylase 6, humanhuman

TSL 3

Gene HDAC6, Length 569 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-235ENST00000495515 NISCHQ9Y2I1 1504 aa40.73■■■■■ 4.11
HDAC6-235ENST00000495515 CCDC180Q9P1Z9 1646 aa36.03■■■■□ 3.36
HDAC6-235ENST00000495515 ABCC9O60706 1549 aa34.96■■■■□ 3.19
HDAC6-235ENST00000495515 ZCCHC6Q5VYS8 1495 aaKnown RBP34■■■■□ 3.03
HDAC6-235ENST00000495515 DCAF8L2P0C7V8 631 aa33.99■■■■□ 3.03
HDAC6-235ENST00000495515 NACADO15069 1562 aa33.85■■■■□ 3.01
HDAC6-235ENST00000495515 RB1CC1Q8TDY2 1594 aa33.81■■■■□ 3
HDAC6-235ENST00000495515 MYO15BQ96JP2 1530 aa33.78■■■■□ 3
HDAC6-235ENST00000495515 DCAF1Q9Y4B6 1507 aa33.74■■■□□ 2.99
HDAC6-235ENST00000495515 SCRIBQ14160 1630 aa32.9■■■□□ 2.86
HDAC6-235ENST00000495515 UNC13AQ9UPW8 1703 aa32.85■■■□□ 2.85
HDAC6-235ENST00000495515 PABPN1Q86U42 306 aaKnown RBP eCLIP32.75■■■□□ 2.839e-8■□□□□ 11.2
HDAC6-235ENST00000495515 BICRAQ9NZM4 1560 aa32.67■■■□□ 2.82
HDAC6-235ENST00000495515 SHROOM4Q9ULL8 1493 aa32.5■■■□□ 2.79
HDAC6-235ENST00000495515 DNAJC5BQ9UF47 199 aa32.45■■■□□ 2.79
HDAC6-235ENST00000495515 EIF4G1Q04637 1599 aaKnown RBP31.84■■■□□ 2.69
HDAC6-235ENST00000495515 CECR2Q9BXF3 1484 aa31.66■■■□□ 2.66
HDAC6-235ENST00000495515 CC2D2AQ9P2K1 1620 aa31.65■■■□□ 2.66
HDAC6-235ENST00000495515 BAZ1AQ9NRL2 1556 aaPredicted RBP31.58■■■□□ 2.65
HDAC6-235ENST00000495515 SMARCA4P51532 1647 aa31.5■■■□□ 2.63
HDAC6-235ENST00000495515 MROH2BQ7Z745 1585 aa31.37■■■□□ 2.61
HDAC6-235ENST00000495515 SMARCA2P51531 1590 aa31.3■■■□□ 2.6
HDAC6-235ENST00000495515 ATAD2BQ9ULI0 1458 aa31.29■■■□□ 2.6
HDAC6-235ENST00000495515 NCAPD3P42695 1498 aa31.25■■■□□ 2.59
HDAC6-235ENST00000495515 PEG3Q9GZU2 1588 aa31.21■■■□□ 2.59
HDAC6-235ENST00000495515 RSF1Q96T23 1441 aaPredicted RBP31.17■■■□□ 2.58
HDAC6-235ENST00000495515 HMGXB3Q12766 1538 aa31.09■■■□□ 2.57
HDAC6-235ENST00000495515 BAZ1BQ9UIG0 1483 aaKnown RBP31.08■■■□□ 2.57
HDAC6-235ENST00000495515 WIZO95785 1651 aa31.01■■■□□ 2.55
HDAC6-235ENST00000495515 TOP2AP11388 1531 aaKnown RBP30.77■■■□□ 2.52
HDAC6-235ENST00000495515 SUPT5HO00267 1087 aaKnown RBP30.69■■■□□ 2.5
HDAC6-235ENST00000495515 CCDC88BA6NC98 1476 aa30.41■■■□□ 2.46
HDAC6-235ENST00000495515 CADPSQ9ULU8 1353 aa30.37■■■□□ 2.45
HDAC6-235ENST00000495515 LAMC3Q9Y6N6 1575 aa30.34■■■□□ 2.45
HDAC6-235ENST00000495515 NESP48681 1621 aa30.32■■■□□ 2.44
HDAC6-235ENST00000495515 CFTRP13569 1480 aa30.24■■■□□ 2.43
HDAC6-235ENST00000495515 ERCC6Q03468 1493 aa30.2■■■□□ 2.43
HDAC6-235ENST00000495515 PDS5BQ9NTI5 1447 aa30.2■■■□□ 2.42
HDAC6-235ENST00000495515 CUX2O14529 1486 aa30.06■■■□□ 2.4
HDAC6-235ENST00000495515 FANCD2Q9BXW9 1451 aa29.99■■■□□ 2.39
HDAC6-235ENST00000495515 CEP164Q9UPV0 1460 aa29.94■■■□□ 2.38
HDAC6-235ENST00000495515 KIF21AQ7Z4S6 1674 aa29.91■■■□□ 2.38
HDAC6-235ENST00000495515 PRDM2Q13029 1718 aa29.91■■■□□ 2.38
HDAC6-235ENST00000495515 THOC2Q8NI27 1593 aaKnown RBP29.85■■■□□ 2.37
HDAC6-235ENST00000495515 MRC2Q9UBG0 1479 aa29.82■■■□□ 2.36
HDAC6-235ENST00000495515 WDR62O43379 1518 aa29.67■■■□□ 2.34
HDAC6-235ENST00000495515 DNAJC5Q9H3Z4 198 aa29.66■■■□□ 2.34
HDAC6-235ENST00000495515 URB2Q14146 1524 aaKnown RBP29.63■■■□□ 2.33
HDAC6-235ENST00000495515 ABCC8Q09428 1581 aa29.63■■■□□ 2.33
HDAC6-235ENST00000495515 DNMBPQ6XZF7 1577 aa29.53■■■□□ 2.32
HDAC6-235ENST00000495515 TOPBP1Q92547 1522 aa29.53■■■□□ 2.32
HDAC6-235ENST00000495515 WRNQ14191 1432 aaPredicted RBP eCLIP29.42■■■□□ 2.3
HDAC6-235ENST00000495515 CUX1P39880 1505 aa29.4■■■□□ 2.3
HDAC6-235ENST00000495515 IFT140Q96RY7 1462 aa29.31■■■□□ 2.28
HDAC6-235ENST00000495515 POLA1P09884 1462 aaPredicted RBP29.3■■■□□ 2.28
HDAC6-235ENST00000495515 FGD5Q6ZNL6 1462 aa29.29■■■□□ 2.28
HDAC6-235ENST00000495515 TOP2BQ02880 1626 aa29.26■■■□□ 2.27
HDAC6-235ENST00000495515 SOGA1O94964 1423 aa29.24■■■□□ 2.27
HDAC6-235ENST00000495515 SYNJ1O43426 1573 aa29.23■■■□□ 2.27
HDAC6-235ENST00000495515 BIVM-ERCC5R4GMW8 1640 aa29.22■■■□□ 2.27
HDAC6-235ENST00000495515 RAD54L2Q9Y4B4 1467 aa29.17■■■□□ 2.26
HDAC6-235ENST00000495515 TARBP1Q13395 1621 aaKnown RBP29.13■■■□□ 2.25
HDAC6-235ENST00000495515 ZNF608Q9ULD9 1512 aaPredicted RBP29.08■■■□□ 2.25
HDAC6-235ENST00000495515 ABCA10Q8WWZ4 1543 aa29.04■■■□□ 2.24
HDAC6-235ENST00000495515 TRIM41Q8WV44 630 aa29.02■■■□□ 2.24
HDAC6-235ENST00000495515 TDRD9Q8NDG6 1382 aaKnown RBP29.01■■■□□ 2.24
HDAC6-235ENST00000495515 WDR97A6NE52 1622 aa29■■■□□ 2.23
HDAC6-235ENST00000495515 AQRO60306 1485 aaKnown RBP eCLIP28.98■■■□□ 2.231e-9■■■■□ 22.4
HDAC6-235ENST00000495515 EIF4G3O43432 1585 aaKnown RBP28.96■■■□□ 2.23
HDAC6-235ENST00000495515 GAPVD1Q14C86 1478 aa28.9■■■□□ 2.22
HDAC6-235ENST00000495515 GRIN2BQ13224 1484 aa28.86■■■□□ 2.21
HDAC6-235ENST00000495515 ABCA5Q8WWZ7 1642 aa28.83■■■□□ 2.21
HDAC6-235ENST00000495515 CHIC1Q5VXU3 224 aa28.82■■■□□ 2.2
HDAC6-235ENST00000495515 KIF27Q86VH2 1401 aa28.81■■■□□ 2.2
HDAC6-235ENST00000495515 MAGI1Q96QZ7 1491 aaPredicted RBP28.74■■■□□ 2.19
HDAC6-235ENST00000495515 SNAPC4Q5SXM2 1469 aa28.73■■■□□ 2.19
HDAC6-235ENST00000495515 PBRM1Q86U86 1689 aa28.7■■■□□ 2.19
HDAC6-235ENST00000495515 ERICH3Q5RHP9 1530 aa28.7■■■□□ 2.19
HDAC6-235ENST00000495515 FBLN2P98095 1184 aa28.65■■■□□ 2.18
HDAC6-235ENST00000495515 CHMP7Q8WUX9 453 aaPredicted RBP28.64■■■□□ 2.18
HDAC6-235ENST00000495515 SYNJ2O15056 1496 aa28.62■■■□□ 2.17
HDAC6-235ENST00000495515 OSCARQ8IYS5 282 aa28.62■■■□□ 2.17
HDAC6-235ENST00000495515 IGF1RP08069 1367 aa28.61■■■□□ 2.17
HDAC6-235ENST00000495515 FHAD1B1AJZ9 1412 aa28.6■■■□□ 2.17
HDAC6-235ENST00000495515 ADAMTS12P58397 1594 aa28.55■■■□□ 2.16
HDAC6-235ENST00000495515 RUSC2Q8N2Y8 1516 aa28.53■■■□□ 2.16
HDAC6-235ENST00000495515 EEA1Q15075 1411 aa28.51■■■□□ 2.15
HDAC6-235ENST00000495515 CHD1O14646 1710 aa28.49■■■□□ 2.15
HDAC6-235ENST00000495515 CUL7Q14999 1698 aa28.48■■■□□ 2.15
HDAC6-235ENST00000495515 CARMIL1Q5VZK9 1371 aa28.48■■■□□ 2.15
HDAC6-235ENST00000495515 GRIN2AQ12879 1464 aa28.46■■■□□ 2.15
HDAC6-235ENST00000495515 CSRNP3Q8WYN3 585 aa28.41■■■□□ 2.14
HDAC6-235ENST00000495515 RIMBP3CA6NJZ7 1639 aa28.38■■■□□ 2.13
HDAC6-235ENST00000495515 RIMBP3BA6NNM3 1639 aa28.38■■■□□ 2.13
HDAC6-235ENST00000495515 RIMBP3Q9UFD9 1639 aa28.38■■■□□ 2.13
HDAC6-235ENST00000495515 FAM9AQ8IZU1 332 aaPredicted RBP28.36■■■□□ 2.13
HDAC6-235ENST00000495515 RAPGEF2Q9Y4G8 1499 aa28.33■■■□□ 2.13
HDAC6-235ENST00000495515 NUP160Q12769 1436 aa28.32■■■□□ 2.12
HDAC6-235ENST00000495515 PRXQ9BXM0 1461 aa28.28■■■□□ 2.12
HDAC6-235ENST00000495515 ARHGEF11O15085 1522 aa28.28■■■□□ 2.12
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms