RNA–Protein interactions for RNA: ENST00000495232.5

CSNK1E-213, Transcript of casein kinase 1 epsilon, humanhuman

TSL 2

Gene CSNK1E, Length 669 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSNK1E-213ENST00000495232 NISCHQ9Y2I1 1504 aa28.91■■■□□ 2.22
CSNK1E-213ENST00000495232 CCDC180Q9P1Z9 1646 aa25.66■■□□□ 1.7
CSNK1E-213ENST00000495232 ABCC9O60706 1549 aa24.98■■□□□ 1.59
CSNK1E-213ENST00000495232 DCAF8L2P0C7V8 631 aa24.23■■□□□ 1.47
CSNK1E-213ENST00000495232 RB1CC1Q8TDY2 1594 aa24.11■■□□□ 1.45
CSNK1E-213ENST00000495232 ZCCHC6Q5VYS8 1495 aaKnown RBP24.1■■□□□ 1.45
CSNK1E-213ENST00000495232 NACADO15069 1562 aa24.1■■□□□ 1.45
CSNK1E-213ENST00000495232 MYO15BQ96JP2 1530 aa23.96■■□□□ 1.43
CSNK1E-213ENST00000495232 DCAF1Q9Y4B6 1507 aa23.91■■□□□ 1.42
CSNK1E-213ENST00000495232 UNC13AQ9UPW8 1703 aa23.52■■□□□ 1.36
CSNK1E-213ENST00000495232 SCRIBQ14160 1630 aa23.44■■□□□ 1.34
CSNK1E-213ENST00000495232 PABPN1Q86U42 306 aaKnown RBP eCLIP23.38■■□□□ 1.33
CSNK1E-213ENST00000495232 BICRAQ9NZM4 1560 aa23.3■■□□□ 1.32
CSNK1E-213ENST00000495232 SHROOM4Q9ULL8 1493 aa23.11■■□□□ 1.29
CSNK1E-213ENST00000495232 DNAJC5BQ9UF47 199 aa22.74■■□□□ 1.23
CSNK1E-213ENST00000495232 EIF4G1Q04637 1599 aaKnown RBP22.72■■□□□ 1.23
CSNK1E-213ENST00000495232 CC2D2AQ9P2K1 1620 aa22.59■■□□□ 1.21
CSNK1E-213ENST00000495232 CECR2Q9BXF3 1484 aa22.48■■□□□ 1.19
CSNK1E-213ENST00000495232 BAZ1AQ9NRL2 1556 aaPredicted RBP22.42■■□□□ 1.18
CSNK1E-213ENST00000495232 SMARCA4P51532 1647 aa22.41■■□□□ 1.18
CSNK1E-213ENST00000495232 MROH2BQ7Z745 1585 aa22.27■■□□□ 1.16
CSNK1E-213ENST00000495232 SMARCA2P51531 1590 aa22.26■■□□□ 1.15
CSNK1E-213ENST00000495232 ATAD2BQ9ULI0 1458 aa22.24■■□□□ 1.15
CSNK1E-213ENST00000495232 NCAPD3P42695 1498 aa22.21■■□□□ 1.15
CSNK1E-213ENST00000495232 PEG3Q9GZU2 1588 aa22.16■■□□□ 1.14
CSNK1E-213ENST00000495232 HMGXB3Q12766 1538 aa22.11■■□□□ 1.13
CSNK1E-213ENST00000495232 BAZ1BQ9UIG0 1483 aaKnown RBP22.11■■□□□ 1.13
CSNK1E-213ENST00000495232 RSF1Q96T23 1441 aaPredicted RBP22.07■■□□□ 1.12
CSNK1E-213ENST00000495232 WIZO95785 1651 aa22.06■■□□□ 1.12
CSNK1E-213ENST00000495232 TOP2AP11388 1531 aaKnown RBP21.84■■□□□ 1.09
CSNK1E-213ENST00000495232 SUPT5HO00267 1087 aaKnown RBP21.72■■□□□ 1.07
CSNK1E-213ENST00000495232 NESP48681 1621 aa21.63■■□□□ 1.05
CSNK1E-213ENST00000495232 LAMC3Q9Y6N6 1575 aa21.63■■□□□ 1.05
CSNK1E-213ENST00000495232 CADPSQ9ULU8 1353 aa21.6■■□□□ 1.05
CSNK1E-213ENST00000495232 CCDC88BA6NC98 1476 aa21.58■■□□□ 1.04
CSNK1E-213ENST00000495232 ERCC6Q03468 1493 aa21.58■■□□□ 1.04
CSNK1E-213ENST00000495232 PDS5BQ9NTI5 1447 aa21.51■■□□□ 1.03
CSNK1E-213ENST00000495232 CFTRP13569 1480 aa21.47■■□□□ 1.03
CSNK1E-213ENST00000495232 KIF21AQ7Z4S6 1674 aa21.4■■□□□ 1.02
CSNK1E-213ENST00000495232 PRDM2Q13029 1718 aa21.35■■□□□ 1.01
CSNK1E-213ENST00000495232 FANCD2Q9BXW9 1451 aa21.35■■□□□ 1.01
CSNK1E-213ENST00000495232 CEP164Q9UPV0 1460 aa21.33■■□□□ 1.01
CSNK1E-213ENST00000495232 THOC2Q8NI27 1593 aaKnown RBP21.27■□□□□ 0.99
CSNK1E-213ENST00000495232 CUX2O14529 1486 aa21.25■□□□□ 0.99
CSNK1E-213ENST00000495232 MRC2Q9UBG0 1479 aa21.25■□□□□ 0.99
CSNK1E-213ENST00000495232 WDR62O43379 1518 aa21.15■□□□□ 0.98
CSNK1E-213ENST00000495232 URB2Q14146 1524 aaKnown RBP21.09■□□□□ 0.97
CSNK1E-213ENST00000495232 ABCC8Q09428 1581 aa21.06■□□□□ 0.96
CSNK1E-213ENST00000495232 TOPBP1Q92547 1522 aa21.01■□□□□ 0.95
CSNK1E-213ENST00000495232 DNMBPQ6XZF7 1577 aa21.01■□□□□ 0.95
CSNK1E-213ENST00000495232 CUX1P39880 1505 aa20.89■□□□□ 0.94
CSNK1E-213ENST00000495232 IFT140Q96RY7 1462 aa20.86■□□□□ 0.93
CSNK1E-213ENST00000495232 WRNQ14191 1432 aaPredicted RBP eCLIP20.85■□□□□ 0.93
CSNK1E-213ENST00000495232 POLA1P09884 1462 aaPredicted RBP20.84■□□□□ 0.93
CSNK1E-213ENST00000495232 FGD5Q6ZNL6 1462 aa20.82■□□□□ 0.92
CSNK1E-213ENST00000495232 SOGA1O94964 1423 aa20.79■□□□□ 0.92
CSNK1E-213ENST00000495232 TOP2BQ02880 1626 aa20.77■□□□□ 0.92
CSNK1E-213ENST00000495232 BIVM-ERCC5R4GMW8 1640 aa20.76■□□□□ 0.91
CSNK1E-213ENST00000495232 RAD54L2Q9Y4B4 1467 aa20.75■□□□□ 0.91
CSNK1E-213ENST00000495232 TARBP1Q13395 1621 aaKnown RBP20.75■□□□□ 0.91
CSNK1E-213ENST00000495232 SYNJ1O43426 1573 aa20.75■□□□□ 0.91
CSNK1E-213ENST00000495232 ZNF608Q9ULD9 1512 aaPredicted RBP20.72■□□□□ 0.91
CSNK1E-213ENST00000495232 EIF4G3O43432 1585 aaKnown RBP20.67■□□□□ 0.9
CSNK1E-213ENST00000495232 AQRO60306 1485 aaKnown RBP eCLIP20.65■□□□□ 0.93e-8■■■■□ 25.6
CSNK1E-213ENST00000495232 TDRD9Q8NDG6 1382 aaKnown RBP20.64■□□□□ 0.89
CSNK1E-213ENST00000495232 WDR97A6NE52 1622 aa20.64■□□□□ 0.89
CSNK1E-213ENST00000495232 ABCA10Q8WWZ4 1543 aa20.61■□□□□ 0.89
CSNK1E-213ENST00000495232 GAPVD1Q14C86 1478 aa20.55■□□□□ 0.88
CSNK1E-213ENST00000495232 GRIN2BQ13224 1484 aa20.52■□□□□ 0.88
CSNK1E-213ENST00000495232 TRIM41Q8WV44 630 aa20.52■□□□□ 0.88
CSNK1E-213ENST00000495232 ABCA5Q8WWZ7 1642 aa20.51■□□□□ 0.87
CSNK1E-213ENST00000495232 PBRM1Q86U86 1689 aa20.49■□□□□ 0.87
CSNK1E-213ENST00000495232 SNAPC4Q5SXM2 1469 aa20.47■□□□□ 0.87
CSNK1E-213ENST00000495232 FBLN2P98095 1184 aa20.46■□□□□ 0.87
CSNK1E-213ENST00000495232 MAGI1Q96QZ7 1491 aaPredicted RBP20.45■□□□□ 0.86
CSNK1E-213ENST00000495232 OSCARQ8IYS5 282 aa20.44■□□□□ 0.86
CSNK1E-213ENST00000495232 KIF27Q86VH2 1401 aa20.43■□□□□ 0.86
CSNK1E-213ENST00000495232 DNAJC5Q9H3Z4 198 aa20.42■□□□□ 0.86
CSNK1E-213ENST00000495232 CHMP7Q8WUX9 453 aaPredicted RBP20.41■□□□□ 0.86
CSNK1E-213ENST00000495232 CHD1O14646 1710 aa20.39■□□□□ 0.86
CSNK1E-213ENST00000495232 ERICH3Q5RHP9 1530 aa20.39■□□□□ 0.85
CSNK1E-213ENST00000495232 SYNJ2O15056 1496 aa20.37■□□□□ 0.85
CSNK1E-213ENST00000495232 ADAMTS12P58397 1594 aa20.31■□□□□ 0.84
CSNK1E-213ENST00000495232 FHAD1B1AJZ9 1412 aa20.31■□□□□ 0.84
CSNK1E-213ENST00000495232 CHIC1Q5VXU3 224 aa20.29■□□□□ 0.84
CSNK1E-213ENST00000495232 IGF1RP08069 1367 aa20.27■□□□□ 0.84
CSNK1E-213ENST00000495232 GRIN2AQ12879 1464 aa20.25■□□□□ 0.83
CSNK1E-213ENST00000495232 CUL7Q14999 1698 aa20.25■□□□□ 0.83
CSNK1E-213ENST00000495232 RUSC2Q8N2Y8 1516 aa20.22■□□□□ 0.83
CSNK1E-213ENST00000495232 CARMIL1Q5VZK9 1371 aa20.2■□□□□ 0.82
CSNK1E-213ENST00000495232 CLASP1Q7Z460 1538 aa20.13■□□□□ 0.81
CSNK1E-213ENST00000495232 CEP170Q5SW79 1584 aa20.12■□□□□ 0.81
CSNK1E-213ENST00000495232 NUP160Q12769 1436 aa20.12■□□□□ 0.81
CSNK1E-213ENST00000495232 EEA1Q15075 1411 aa20.12■□□□□ 0.81
CSNK1E-213ENST00000495232 CSRNP3Q8WYN3 585 aa20.09■□□□□ 0.81
CSNK1E-213ENST00000495232 RAPGEF2Q9Y4G8 1499 aa20.09■□□□□ 0.81
CSNK1E-213ENST00000495232 FAM9AQ8IZU1 332 aaPredicted RBP20.08■□□□□ 0.81
CSNK1E-213ENST00000495232 ARHGEF11O15085 1522 aa20.05■□□□□ 0.8
CSNK1E-213ENST00000495232 RIMBP3CA6NJZ7 1639 aa20.04■□□□□ 0.8
CSNK1E-213ENST00000495232 RIMBP3BA6NNM3 1639 aa20.04■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms