RNA–Protein interactions for RNA: ENST00000494954.1

PNKD-208, Transcript of PNKD, MBL domain containing, humanhuman

TSL 3

Gene PNKD, Length 248 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKD-208ENST00000494954 AEBP2Q6ZN18 517 aaPredicted RBP17.02■□□□□ 0.32
PNKD-208ENST00000494954 CHIC1Q5VXU3 224 aa16.02■□□□□ 0.16
PNKD-208ENST00000494954 NISCHQ9Y2I1 1504 aa15.21■□□□□ 0.03
PNKD-208ENST00000494954 SENP3Q9H4L4 574 aaPredicted RBP14.48□□□□□ -0.09
PNKD-208ENST00000494954 PHF23Q9BUL5 403 aaPredicted RBP14.31□□□□□ -0.12
PNKD-208ENST00000494954 ABCC9O60706 1549 aa14.09□□□□□ -0.15
PNKD-208ENST00000494954 CCDC180Q9P1Z9 1646 aa13.86□□□□□ -0.19
PNKD-208ENST00000494954 DNAJC5BQ9UF47 199 aa13.66□□□□□ -0.22
PNKD-208ENST00000494954 FOXD1Q16676 465 aa13.56□□□□□ -0.24
PNKD-208ENST00000494954 RB1CC1Q8TDY2 1594 aa13.36□□□□□ -0.27
PNKD-208ENST00000494954 NACADO15069 1562 aa13.24□□□□□ -0.29
PNKD-208ENST00000494954 MYO15BQ96JP2 1530 aa13.09□□□□□ -0.31
PNKD-208ENST00000494954 SHROOM4Q9ULL8 1493 aa13.02□□□□□ -0.33
PNKD-208ENST00000494954 BICRAQ9NZM4 1560 aa12.99□□□□□ -0.33
PNKD-208ENST00000494954 PABPN1Q86U42 306 aaKnown RBP eCLIP12.99□□□□□ -0.33
PNKD-208ENST00000494954 DNAJC5Q9H3Z4 198 aa12.97□□□□□ -0.33
PNKD-208ENST00000494954 UNC13AQ9UPW8 1703 aa12.89□□□□□ -0.35
PNKD-208ENST00000494954 CECR2Q9BXF3 1484 aa12.83□□□□□ -0.36
PNKD-208ENST00000494954 CC2D2AQ9P2K1 1620 aa12.76□□□□□ -0.37
PNKD-208ENST00000494954 PLPPR3Q6T4P5 718 aa12.72□□□□□ -0.37
PNKD-208ENST00000494954 DCAF1Q9Y4B6 1507 aa12.7□□□□□ -0.38
PNKD-208ENST00000494954 EIF4G1Q04637 1599 aaKnown RBP12.69□□□□□ -0.38
PNKD-208ENST00000494954 MSH5O43196 834 aa12.68□□□□□ -0.38
PNKD-208ENST00000494954 DCAF8L2P0C7V8 631 aa12.66□□□□□ -0.38
PNKD-208ENST00000494954 POTEDQ86YR6 584 aa12.63□□□□□ -0.39
PNKD-208ENST00000494954 PIAS4Q8N2W9 510 aaPredicted RBP12.62□□□□□ -0.39
PNKD-208ENST00000494954 PPP6R1Q9UPN7 881 aa12.6□□□□□ -0.39
PNKD-208ENST00000494954 ADRA2BP18089 450 aa12.55□□□□□ -0.4
PNKD-208ENST00000494954 ZCCHC6Q5VYS8 1495 aaKnown RBP12.53□□□□□ -0.4
PNKD-208ENST00000494954 CUX2O14529 1486 aa12.53□□□□□ -0.4
PNKD-208ENST00000494954 SCRIBQ14160 1630 aa12.4□□□□□ -0.42
PNKD-208ENST00000494954 NCAPD3P42695 1498 aa12.27□□□□□ -0.44
PNKD-208ENST00000494954 ERCC6Q03468 1493 aa12.21□□□□□ -0.46
PNKD-208ENST00000494954 HMGXB3Q12766 1538 aa12.11□□□□□ -0.47
PNKD-208ENST00000494954 ATAD2BQ9ULI0 1458 aa12.08□□□□□ -0.48
PNKD-208ENST00000494954 THOC2Q8NI27 1593 aaKnown RBP12.05□□□□□ -0.48
PNKD-208ENST00000494954 SMARCA2P51531 1590 aa12.04□□□□□ -0.48
PNKD-208ENST00000494954 NESP48681 1621 aa11.98□□□□□ -0.49
PNKD-208ENST00000494954 LAMC3Q9Y6N6 1575 aa11.98□□□□□ -0.49
PNKD-208ENST00000494954 PEG3Q9GZU2 1588 aa11.96□□□□□ -0.5
PNKD-208ENST00000494954 TRIM41Q8WV44 630 aa11.93□□□□□ -0.5
PNKD-208ENST00000494954 PDS5BQ9NTI5 1447 aa11.93□□□□□ -0.5
PNKD-208ENST00000494954 SMARCA4P51532 1647 aa11.89□□□□□ -0.51
PNKD-208ENST00000494954 BAZ1BQ9UIG0 1483 aaKnown RBP11.88□□□□□ -0.51
PNKD-208ENST00000494954 WDR62O43379 1518 aa11.85□□□□□ -0.51
PNKD-208ENST00000494954 BAZ1AQ9NRL2 1556 aaPredicted RBP11.84□□□□□ -0.51
PNKD-208ENST00000494954 MRC2Q9UBG0 1479 aa11.82□□□□□ -0.52
PNKD-208ENST00000494954 CADPSQ9ULU8 1353 aa11.8□□□□□ -0.52
PNKD-208ENST00000494954 OSCARQ8IYS5 282 aa11.78□□□□□ -0.52
PNKD-208ENST00000494954 KIF21AQ7Z4S6 1674 aa11.78□□□□□ -0.52
PNKD-208ENST00000494954 CEP164Q9UPV0 1460 aa11.65□□□□□ -0.54
PNKD-208ENST00000494954 MROH2BQ7Z745 1585 aa11.63□□□□□ -0.55
PNKD-208ENST00000494954 CFTRP13569 1480 aa11.62□□□□□ -0.55
PNKD-208ENST00000494954 RIMBP3CA6NJZ7 1639 aa11.6□□□□□ -0.55
PNKD-208ENST00000494954 RIMBP3BA6NNM3 1639 aa11.6□□□□□ -0.55
PNKD-208ENST00000494954 RIMBP3Q9UFD9 1639 aa11.6□□□□□ -0.55
PNKD-208ENST00000494954 FANCD2Q9BXW9 1451 aa11.6□□□□□ -0.55
PNKD-208ENST00000494954 ARHGEF11O15085 1522 aa11.59□□□□□ -0.55
PNKD-208ENST00000494954 MAPK8IP2Q13387 824 aaPredicted RBP11.58□□□□□ -0.56
PNKD-208ENST00000494954 URB2Q14146 1524 aaKnown RBP11.54□□□□□ -0.56
PNKD-208ENST00000494954 RSF1Q96T23 1441 aaPredicted RBP11.51□□□□□ -0.57
PNKD-208ENST00000494954 IFT140Q96RY7 1462 aa11.5□□□□□ -0.57
PNKD-208ENST00000494954 DMRT2Q9Y5R5 561 aa11.48□□□□□ -0.57
PNKD-208ENST00000494954 ARAP1Q96P48 1450 aa11.44□□□□□ -0.58
PNKD-208ENST00000494954 SCAF1Q9H7N4 1312 aaKnown RBP11.42□□□□□ -0.58
PNKD-208ENST00000494954 ZNF608Q9ULD9 1512 aaPredicted RBP11.41□□□□□ -0.58
PNKD-208ENST00000494954 CYB5RLQ6IPT4 315 aa11.41□□□□□ -0.58
PNKD-208ENST00000494954 ABCC8Q09428 1581 aa11.39□□□□□ -0.59
PNKD-208ENST00000494954 WIZO95785 1651 aa11.37□□□□□ -0.59
PNKD-208ENST00000494954 TRHP20396 242 aaPredicted RBP11.35□□□□□ -0.59
PNKD-208ENST00000494954 TOP2AP11388 1531 aaKnown RBP11.35□□□□□ -0.59
PNKD-208ENST00000494954 TOPBP1Q92547 1522 aa11.34□□□□□ -0.59
PNKD-208ENST00000494954 EIF4G3O43432 1585 aaKnown RBP11.33□□□□□ -0.6
PNKD-208ENST00000494954 TARBP1Q13395 1621 aaKnown RBP11.29□□□□□ -0.6
PNKD-208ENST00000494954 CLASP1Q7Z460 1538 aa11.29□□□□□ -0.6
PNKD-208ENST00000494954 PRDM2Q13029 1718 aa11.29□□□□□ -0.6
PNKD-208ENST00000494954 WDR97A6NE52 1622 aa11.28□□□□□ -0.6
PNKD-208ENST00000494954 DNMBPQ6XZF7 1577 aa11.27□□□□□ -0.61
PNKD-208ENST00000494954 AQRO60306 1485 aaKnown RBP eCLIP11.25□□□□□ -0.61
PNKD-208ENST00000494954 CHD1O14646 1710 aa11.23□□□□□ -0.61
PNKD-208ENST00000494954 POLA1P09884 1462 aaPredicted RBP11.21□□□□□ -0.61
PNKD-208ENST00000494954 MAGI1Q96QZ7 1491 aaPredicted RBP11.2□□□□□ -0.62
PNKD-208ENST00000494954 CCDC88BA6NC98 1476 aa11.19□□□□□ -0.62
PNKD-208ENST00000494954 SYNJ1O43426 1573 aa11.18□□□□□ -0.62
PNKD-208ENST00000494954 PPP4R3CPQ6ZMV5 832 aa11.16□□□□□ -0.62
PNKD-208ENST00000494954 SYNJ2O15056 1496 aa11.15□□□□□ -0.62
PNKD-208ENST00000494954 GAPVD1Q14C86 1478 aa11.14□□□□□ -0.63
PNKD-208ENST00000494954 SNAPC4Q5SXM2 1469 aa11.13□□□□□ -0.63
PNKD-208ENST00000494954 GRIN2BQ13224 1484 aa11.12□□□□□ -0.63
PNKD-208ENST00000494954 SOGA1O94964 1423 aa11.12□□□□□ -0.63
PNKD-208ENST00000494954 FBLN2P98095 1184 aa11.11□□□□□ -0.63
PNKD-208ENST00000494954 TDRD9Q8NDG6 1382 aaKnown RBP11.1□□□□□ -0.63
PNKD-208ENST00000494954 CHMP7Q8WUX9 453 aaPredicted RBP11.09□□□□□ -0.63
PNKD-208ENST00000494954 RAD54L2Q9Y4B4 1467 aa11.07□□□□□ -0.64
PNKD-208ENST00000494954 DCAF8L1A6NGE4 600 aa11.04□□□□□ -0.64
PNKD-208ENST00000494954 FGD5Q6ZNL6 1462 aa11.03□□□□□ -0.64
PNKD-208ENST00000494954 NUP160Q12769 1436 aa11.02□□□□□ -0.64
PNKD-208ENST00000494954 HOXD11P31277 338 aaPredicted RBP11.01□□□□□ -0.65
PNKD-208ENST00000494954 CACNB1Q02641 598 aaPredicted RBP10.99□□□□□ -0.65
PNKD-208ENST00000494954 ILDR1Q86SU0 546 aaPredicted RBP10.99□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 65.8 ms