RNA–Protein interactions for RNA: ENST00000494795.1

SAMM50-206, Transcript of SAMM50 sorting and assembly machinery component, humanhuman

TSL 2

Gene SAMM50, Length 3,248 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SAMM50-206ENST00000494795 NISCHQ9Y2I1 1504 aa22.59■■□□□ 1.21
SAMM50-206ENST00000494795 CCDC180Q9P1Z9 1646 aa19.25■□□□□ 0.67
SAMM50-206ENST00000494795 SHROOM4Q9ULL8 1493 aa19.22■□□□□ 0.67
SAMM50-206ENST00000494795 DCAF8L2P0C7V8 631 aa19.05■□□□□ 0.64
SAMM50-206ENST00000494795 ZCCHC6Q5VYS8 1495 aaKnown RBP19.02■□□□□ 0.64
SAMM50-206ENST00000494795 CHIC1Q5VXU3 224 aa18.69■□□□□ 0.58
SAMM50-206ENST00000494795 SUPT5HO00267 1087 aaKnown RBP18.62■□□□□ 0.57
SAMM50-206ENST00000494795 ABCC9O60706 1549 aa18.42■□□□□ 0.54
SAMM50-206ENST00000494795 DCAF1Q9Y4B6 1507 aa18.4■□□□□ 0.54
SAMM50-206ENST00000494795 AEBP2Q6ZN18 517 aaPredicted RBP18.38■□□□□ 0.53
SAMM50-206ENST00000494795 SCRIBQ14160 1630 aa18.19■□□□□ 0.5
SAMM50-206ENST00000494795 MYO15BQ96JP2 1530 aa17.97■□□□□ 0.47
SAMM50-206ENST00000494795 NACADO15069 1562 aa17.91■□□□□ 0.46
SAMM50-206ENST00000494795 CECR2Q9BXF3 1484 aa17.79■□□□□ 0.44
SAMM50-206ENST00000494795 RSF1Q96T23 1441 aaPredicted RBP17.79■□□□□ 0.44
SAMM50-206ENST00000494795 RB1CC1Q8TDY2 1594 aa17.73■□□□□ 0.43
SAMM50-206ENST00000494795 MROH2BQ7Z745 1585 aa17.63■□□□□ 0.41
SAMM50-206ENST00000494795 PABPN1Q86U42 306 aaKnown RBP eCLIP17.62■□□□□ 0.41
SAMM50-206ENST00000494795 UNC13AQ9UPW8 1703 aa17.57■□□□□ 0.4
SAMM50-206ENST00000494795 WIZO95785 1651 aa17.52■□□□□ 0.4
SAMM50-206ENST00000494795 LOC105371045A0A1W2PR82 267 aa17.43■□□□□ 0.38
SAMM50-206ENST00000494795 BICRAQ9NZM4 1560 aa17.39■□□□□ 0.37
SAMM50-206ENST00000494795 BAZ1AQ9NRL2 1556 aaPredicted RBP17.32■□□□□ 0.36
SAMM50-206ENST00000494795 SMARCA4P51532 1647 aa17.28■□□□□ 0.36
SAMM50-206ENST00000494795 FAM9AQ8IZU1 332 aaPredicted RBP17.26■□□□□ 0.35
SAMM50-206ENST00000494795 TRIM41Q8WV44 630 aa17.26■□□□□ 0.35
SAMM50-206ENST00000494795 EHMT2Q96KQ7 1210 aa17.25■□□□□ 0.35
SAMM50-206ENST00000494795 CCDC88BA6NC98 1476 aa17.14■□□□□ 0.33
SAMM50-206ENST00000494795 TOP2AP11388 1531 aaKnown RBP17.12■□□□□ 0.33
SAMM50-206ENST00000494795 SMARCA2P51531 1590 aa17.07■□□□□ 0.32
SAMM50-206ENST00000494795 EIF4G1Q04637 1599 aaKnown RBP17.04■□□□□ 0.32
SAMM50-206ENST00000494795 ABCC8Q09428 1581 aa17.04■□□□□ 0.32
SAMM50-206ENST00000494795 PHF23Q9BUL5 403 aaPredicted RBP16.97■□□□□ 0.31
SAMM50-206ENST00000494795 ATAD2BQ9ULI0 1458 aa16.96■□□□□ 0.31
SAMM50-206ENST00000494795 PCGF6Q9BYE7 350 aa16.94■□□□□ 0.3
SAMM50-206ENST00000494795 PEG3Q9GZU2 1588 aa16.9■□□□□ 0.3
SAMM50-206ENST00000494795 BAZ1BQ9UIG0 1483 aaKnown RBP16.86■□□□□ 0.29
SAMM50-206ENST00000494795 SOGA1O94964 1423 aa16.8■□□□□ 0.28
SAMM50-206ENST00000494795 RUSC2Q8N2Y8 1516 aa16.79■□□□□ 0.28
SAMM50-206ENST00000494795 PPARGC1BQ86YN6 1023 aaKnown RBP16.75■□□□□ 0.27
SAMM50-206ENST00000494795 WRNQ14191 1432 aaPredicted RBP eCLIP16.68■□□□□ 0.26
SAMM50-206ENST00000494795 SYNJ1O43426 1573 aa16.67■□□□□ 0.26
SAMM50-206ENST00000494795 NCAPD3P42695 1498 aa16.64■□□□□ 0.25
SAMM50-206ENST00000494795 CSRNP3Q8WYN3 585 aa16.57■□□□□ 0.24
SAMM50-206ENST00000494795 HMGXB3Q12766 1538 aa16.56■□□□□ 0.24
SAMM50-206ENST00000494795 HRCP23327 699 aa16.55■□□□□ 0.24
SAMM50-206ENST00000494795 TRIM26Q12899 539 aaPredicted RBP16.55■□□□□ 0.24
SAMM50-206ENST00000494795 TTBK1Q5TCY1 1321 aaPredicted RBP16.54■□□□□ 0.24
SAMM50-206ENST00000494795 CC2D2AQ9P2K1 1620 aa16.51■□□□□ 0.23
SAMM50-206ENST00000494795 UBTFP17480 764 aaKnown RBP16.51■□□□□ 0.23
SAMM50-206ENST00000494795 DNAJC5BQ9UF47 199 aa16.51■□□□□ 0.23
SAMM50-206ENST00000494795 RANGAP1P46060 587 aaPredicted RBP16.47■□□□□ 0.23
SAMM50-206ENST00000494795 CEP162Q5TB80 1403 aa16.44■□□□□ 0.22
SAMM50-206ENST00000494795 CFTRP13569 1480 aa16.43■□□□□ 0.22
SAMM50-206ENST00000494795 CUX1P39880 1505 aa16.42■□□□□ 0.22
SAMM50-206ENST00000494795 TOP2BQ02880 1626 aa16.4■□□□□ 0.22
SAMM50-206ENST00000494795 TNIKQ9UKE5 1360 aa16.38■□□□□ 0.21
SAMM50-206ENST00000494795 RAPGEF2Q9Y4G8 1499 aa16.37■□□□□ 0.21
SAMM50-206ENST00000494795 EEA1Q15075 1411 aa16.37■□□□□ 0.21
SAMM50-206ENST00000494795 GOLGA3Q08378 1498 aa16.34■□□□□ 0.21
SAMM50-206ENST00000494795 NESP48681 1621 aa16.34■□□□□ 0.21
SAMM50-206ENST00000494795 CADPSQ9ULU8 1353 aa16.33■□□□□ 0.21
SAMM50-206ENST00000494795 BIVM-ERCC5R4GMW8 1640 aa16.32■□□□□ 0.2
SAMM50-206ENST00000494795 CEP164Q9UPV0 1460 aa16.28■□□□□ 0.2
SAMM50-206ENST00000494795 KIF21BO75037 1637 aa16.24■□□□□ 0.19
SAMM50-206ENST00000494795 CLIP1P30622 1438 aa16.2■□□□□ 0.18
SAMM50-206ENST00000494795 FANCD2Q9BXW9 1451 aa16.19■□□□□ 0.18
SAMM50-206ENST00000494795 FGD5Q6ZNL6 1462 aa16.17■□□□□ 0.18
SAMM50-206ENST00000494795 PRXQ9BXM0 1461 aa16.17■□□□□ 0.18
SAMM50-206ENST00000494795 PRDM2Q13029 1718 aa16.16■□□□□ 0.18
SAMM50-206ENST00000494795 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.16■□□□□ 0.18
SAMM50-206ENST00000494795 CUX2O14529 1486 aa16.16■□□□□ 0.18
SAMM50-206ENST00000494795 KIF27Q86VH2 1401 aa16.15■□□□□ 0.18
SAMM50-206ENST00000494795 RAD54L2Q9Y4B4 1467 aa16.14■□□□□ 0.17
SAMM50-206ENST00000494795 IGF1RP08069 1367 aa16.1■□□□□ 0.17
SAMM50-206ENST00000494795 VPS8Q8N3P4 1428 aa16.05■□□□□ 0.16
SAMM50-206ENST00000494795 TOPBP1Q92547 1522 aa16.04■□□□□ 0.16
SAMM50-206ENST00000494795 POLA1P09884 1462 aaPredicted RBP16.03■□□□□ 0.16
SAMM50-206ENST00000494795 ERICH3Q5RHP9 1530 aa16.03■□□□□ 0.16
SAMM50-206ENST00000494795 ARAP1Q96P48 1450 aa16.03■□□□□ 0.16
SAMM50-206ENST00000494795 URB2Q14146 1524 aaKnown RBP16.02■□□□□ 0.16
SAMM50-206ENST00000494795 KANK4Q5T7N3 995 aaPredicted RBP16■□□□□ 0.15
SAMM50-206ENST00000494795 CARMIL1Q5VZK9 1371 aa16■□□□□ 0.15
SAMM50-206ENST00000494795 HNRNPUL2Q1KMD3 747 aaKnown RBP15.98■□□□□ 0.15
SAMM50-206ENST00000494795 P3H3Q8IVL6 736 aa15.98■□□□□ 0.15
SAMM50-206ENST00000494795 DNMBPQ6XZF7 1577 aa15.98■□□□□ 0.15
SAMM50-206ENST00000494795 TDRD9Q8NDG6 1382 aaKnown RBP15.97■□□□□ 0.15
SAMM50-206ENST00000494795 CCER1Q8TC90 406 aaPredicted RBP15.96■□□□□ 0.15
SAMM50-206ENST00000494795 ARHGAP35Q9NRY4 1499 aa15.95■□□□□ 0.14
SAMM50-206ENST00000494795 KIF21AQ7Z4S6 1674 aa15.95■□□□□ 0.14
SAMM50-206ENST00000494795 LAMC3Q9Y6N6 1575 aa15.94■□□□□ 0.14
SAMM50-206ENST00000494795 APLP2Q06481 763 aa15.92■□□□□ 0.14
SAMM50-206ENST00000494795 ABCA10Q8WWZ4 1543 aa15.9■□□□□ 0.14
SAMM50-206ENST00000494795 PDS5BQ9NTI5 1447 aa15.88■□□□□ 0.13
SAMM50-206ENST00000494795 ZEB1P37275 1124 aaPredicted RBP15.85■□□□□ 0.13
SAMM50-206ENST00000494795 ATP1B4Q9UN42 357 aaPredicted RBP15.82■□□□□ 0.12
SAMM50-206ENST00000494795 FHOD3Q2V2M9 1422 aa15.79■□□□□ 0.12
SAMM50-206ENST00000494795 WDR97A6NE52 1622 aa15.79■□□□□ 0.12
SAMM50-206ENST00000494795 AQRO60306 1485 aaKnown RBP eCLIP15.79■□□□□ 0.12
SAMM50-206ENST00000494795 GAPVD1Q14C86 1478 aa15.77■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 6.8 ms