RNA–Protein interactions for RNA: ENST00000494327.1

HPS3-207, Transcript of HPS3, biogenesis of lysosomal organelles complex 2 subunit 1, humanhuman

TSL 3

Gene HPS3, Length 556 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS3-207ENST00000494327 NISCHQ9Y2I1 1504 aa53.37■■■■■ 6.13
HPS3-207ENST00000494327 CCDC180Q9P1Z9 1646 aa47.44■■■■■ 5.18
HPS3-207ENST00000494327 ABCC9O60706 1549 aa46.86■■■■■ 5.09
HPS3-207ENST00000494327 DCAF8L2P0C7V8 631 aa44.98■■■■■ 4.79
HPS3-207ENST00000494327 RB1CC1Q8TDY2 1594 aa44.86■■■■■ 4.77
HPS3-207ENST00000494327 NACADO15069 1562 aa44.73■■■■■ 4.75
HPS3-207ENST00000494327 ZCCHC6Q5VYS8 1495 aaKnown RBP44.38■■■■■ 4.69
HPS3-207ENST00000494327 MYO15BQ96JP2 1530 aa44.31■■■■■ 4.68
HPS3-207ENST00000494327 DCAF1Q9Y4B6 1507 aa44.05■■■■■ 4.64
HPS3-207ENST00000494327 PABPN1Q86U42 306 aaKnown RBP eCLIP43.84■■■■■ 4.61
HPS3-207ENST00000494327 UNC13AQ9UPW8 1703 aa43.76■■■■■ 4.6
HPS3-207ENST00000494327 BICRAQ9NZM4 1560 aa43.5■■■■■ 4.55
HPS3-207ENST00000494327 SCRIBQ14160 1630 aa43.42■■■■■ 4.54
HPS3-207ENST00000494327 DNAJC5BQ9UF47 199 aa43.27■■■■■ 4.52
HPS3-207ENST00000494327 SHROOM4Q9ULL8 1493 aa42.93■■■■■ 4.46
HPS3-207ENST00000494327 EIF4G1Q04637 1599 aaKnown RBP42.39■■■■■ 4.38
HPS3-207ENST00000494327 CC2D2AQ9P2K1 1620 aa42.29■■■■■ 4.36
HPS3-207ENST00000494327 CECR2Q9BXF3 1484 aa42.1■■■■■ 4.33
HPS3-207ENST00000494327 SMARCA4P51532 1647 aa41.44■■■■■ 4.22
HPS3-207ENST00000494327 BAZ1AQ9NRL2 1556 aaPredicted RBP41.37■■■■■ 4.21
HPS3-207ENST00000494327 ATAD2BQ9ULI0 1458 aa41.32■■■■■ 4.2
HPS3-207ENST00000494327 NCAPD3P42695 1498 aa41.31■■■■■ 4.2
HPS3-207ENST00000494327 SMARCA2P51531 1590 aa41.22■■■■■ 4.19
HPS3-207ENST00000494327 MROH2BQ7Z745 1585 aa41.17■■■■■ 4.18
HPS3-207ENST00000494327 HMGXB3Q12766 1538 aa41.03■■■■■ 4.16
HPS3-207ENST00000494327 BAZ1BQ9UIG0 1483 aaKnown RBP40.99■■■■■ 4.15
HPS3-207ENST00000494327 PEG3Q9GZU2 1588 aa40.97■■■■■ 4.15
HPS3-207ENST00000494327 WIZO95785 1651 aa40.7■■■■■ 4.11
HPS3-207ENST00000494327 RSF1Q96T23 1441 aaPredicted RBP40.62■■■■■ 4.09
HPS3-207ENST00000494327 NESP48681 1621 aa40.47■■■■■ 4.07
HPS3-207ENST00000494327 ERCC6Q03468 1493 aa40.41■■■■■ 4.06
HPS3-207ENST00000494327 LAMC3Q9Y6N6 1575 aa40.23■■■■■ 4.03
HPS3-207ENST00000494327 TOP2AP11388 1531 aaKnown RBP40.21■■■■■ 4.03
HPS3-207ENST00000494327 CADPSQ9ULU8 1353 aa40.14■■■■■ 4.02
HPS3-207ENST00000494327 PDS5BQ9NTI5 1447 aa40.04■■■■■ 4
HPS3-207ENST00000494327 CUX2O14529 1486 aa39.96■■■■□ 3.99
HPS3-207ENST00000494327 KIF21AQ7Z4S6 1674 aa39.89■■■■□ 3.98
HPS3-207ENST00000494327 CCDC88BA6NC98 1476 aa39.81■■■■□ 3.96
HPS3-207ENST00000494327 CFTRP13569 1480 aa39.81■■■■□ 3.96
HPS3-207ENST00000494327 THOC2Q8NI27 1593 aaKnown RBP39.78■■■■□ 3.96
HPS3-207ENST00000494327 FANCD2Q9BXW9 1451 aa39.68■■■■□ 3.94
HPS3-207ENST00000494327 CEP164Q9UPV0 1460 aa39.64■■■■□ 3.94
HPS3-207ENST00000494327 MRC2Q9UBG0 1479 aa39.62■■■■□ 3.93
HPS3-207ENST00000494327 SUPT5HO00267 1087 aaKnown RBP39.61■■■■□ 3.93
HPS3-207ENST00000494327 WDR62O43379 1518 aa39.45■■■■□ 3.91
HPS3-207ENST00000494327 PRDM2Q13029 1718 aa39.35■■■■□ 3.89
HPS3-207ENST00000494327 URB2Q14146 1524 aaKnown RBP39.29■■■■□ 3.88
HPS3-207ENST00000494327 DNAJC5Q9H3Z4 198 aa39.12■■■■□ 3.85
HPS3-207ENST00000494327 TOPBP1Q92547 1522 aa39■■■■□ 3.83
HPS3-207ENST00000494327 ABCC8Q09428 1581 aa38.95■■■■□ 3.83
HPS3-207ENST00000494327 DNMBPQ6XZF7 1577 aa38.9■■■■□ 3.82
HPS3-207ENST00000494327 IFT140Q96RY7 1462 aa38.81■■■■□ 3.8
HPS3-207ENST00000494327 ZNF608Q9ULD9 1512 aaPredicted RBP38.69■■■■□ 3.78
HPS3-207ENST00000494327 POLA1P09884 1462 aaPredicted RBP38.66■■■■□ 3.78
HPS3-207ENST00000494327 CUX1P39880 1505 aa38.62■■■■□ 3.77
HPS3-207ENST00000494327 SOGA1O94964 1423 aa38.55■■■■□ 3.76
HPS3-207ENST00000494327 RAD54L2Q9Y4B4 1467 aa38.55■■■■□ 3.76
HPS3-207ENST00000494327 FGD5Q6ZNL6 1462 aa38.54■■■■□ 3.76
HPS3-207ENST00000494327 TARBP1Q13395 1621 aaKnown RBP38.54■■■■□ 3.76
HPS3-207ENST00000494327 AQRO60306 1485 aaKnown RBP eCLIP38.48■■■■□ 3.75
HPS3-207ENST00000494327 EIF4G3O43432 1585 aaKnown RBP38.46■■■■□ 3.75
HPS3-207ENST00000494327 OSCARQ8IYS5 282 aa38.41■■■■□ 3.74
HPS3-207ENST00000494327 TDRD9Q8NDG6 1382 aaKnown RBP38.41■■■■□ 3.74
HPS3-207ENST00000494327 WRNQ14191 1432 aaPredicted RBP eCLIP38.32■■■■□ 3.73
HPS3-207ENST00000494327 SYNJ1O43426 1573 aa38.19■■■■□ 3.7
HPS3-207ENST00000494327 FBLN2P98095 1184 aa38.19■■■■□ 3.7
HPS3-207ENST00000494327 TOP2BQ02880 1626 aa38.18■■■■□ 3.7
HPS3-207ENST00000494327 WDR97A6NE52 1622 aa38.15■■■■□ 3.7
HPS3-207ENST00000494327 BIVM-ERCC5R4GMW8 1640 aa38.15■■■■□ 3.7
HPS3-207ENST00000494327 ABCA10Q8WWZ4 1543 aa38.12■■■■□ 3.69
HPS3-207ENST00000494327 SNAPC4Q5SXM2 1469 aa38.09■■■■□ 3.69
HPS3-207ENST00000494327 GRIN2BQ13224 1484 aa38.08■■■■□ 3.69
HPS3-207ENST00000494327 GAPVD1Q14C86 1478 aa38.07■■■■□ 3.68
HPS3-207ENST00000494327 CHD1O14646 1710 aa38.01■■■■□ 3.67
HPS3-207ENST00000494327 CHMP7Q8WUX9 453 aaPredicted RBP37.99■■■■□ 3.67
HPS3-207ENST00000494327 MAGI1Q96QZ7 1491 aaPredicted RBP37.96■■■■□ 3.67
HPS3-207ENST00000494327 ABCA5Q8WWZ7 1642 aa37.94■■■■□ 3.66
HPS3-207ENST00000494327 PBRM1Q86U86 1689 aa37.92■■■■□ 3.66
HPS3-207ENST00000494327 TRIM41Q8WV44 630 aa37.87■■■■□ 3.65
HPS3-207ENST00000494327 SYNJ2O15056 1496 aa37.84■■■■□ 3.65
HPS3-207ENST00000494327 RIMBP3CA6NJZ7 1639 aa37.7■■■■□ 3.63
HPS3-207ENST00000494327 RIMBP3BA6NNM3 1639 aa37.7■■■■□ 3.63
HPS3-207ENST00000494327 RIMBP3Q9UFD9 1639 aa37.7■■■■□ 3.63
HPS3-207ENST00000494327 ARHGEF11O15085 1522 aa37.68■■■■□ 3.62
HPS3-207ENST00000494327 ERICH3Q5RHP9 1530 aa37.64■■■■□ 3.62
HPS3-207ENST00000494327 ADAMTS12P58397 1594 aa37.62■■■■□ 3.61
HPS3-207ENST00000494327 FHAD1B1AJZ9 1412 aa37.61■■■■□ 3.61
HPS3-207ENST00000494327 CLASP1Q7Z460 1538 aa37.59■■■■□ 3.61
HPS3-207ENST00000494327 GRIN2AQ12879 1464 aa37.58■■■■□ 3.61
HPS3-207ENST00000494327 KIF27Q86VH2 1401 aa37.54■■■■□ 3.6
HPS3-207ENST00000494327 CYB5RLQ6IPT4 315 aa37.5■■■■□ 3.59
HPS3-207ENST00000494327 IGF1RP08069 1367 aa37.43■■■■□ 3.58
HPS3-207ENST00000494327 NUP160Q12769 1436 aa37.4■■■■□ 3.58
HPS3-207ENST00000494327 CEP170Q5SW79 1584 aa37.39■■■■□ 3.58
HPS3-207ENST00000494327 ARAP1Q96P48 1450 aa37.38■■■■□ 3.57
HPS3-207ENST00000494327 CUL7Q14999 1698 aa37.23■■■■□ 3.55
HPS3-207ENST00000494327 CARMIL1Q5VZK9 1371 aa37.23■■■■□ 3.55
HPS3-207ENST00000494327 RUSC2Q8N2Y8 1516 aa37.17■■■■□ 3.54
HPS3-207ENST00000494327 JPH4Q96JJ6 628 aa37.14■■■■□ 3.54
HPS3-207ENST00000494327 ERCC6L2Q5T890 1561 aa37.12■■■■□ 3.53
Retrieved 100 of 20,778 RNA–protein pairs in 97 ms