RNA–Protein interactions for RNA: ENST00000494123.5

BRCA1-223, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 1,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-223ENST00000494123 NISCHQ9Y2I1 1504 aa34.56■■■■□ 3.12
BRCA1-223ENST00000494123 CCDC180Q9P1Z9 1646 aa30.58■■■□□ 2.49
BRCA1-223ENST00000494123 ABCC9O60706 1549 aa29.55■■■□□ 2.32
BRCA1-223ENST00000494123 ZCCHC6Q5VYS8 1495 aaKnown RBP28.87■■■□□ 2.21
BRCA1-223ENST00000494123 DCAF8L2P0C7V8 631 aa28.79■■■□□ 2.2
BRCA1-223ENST00000494123 NACADO15069 1562 aa28.64■■■□□ 2.18
BRCA1-223ENST00000494123 RB1CC1Q8TDY2 1594 aa28.6■■■□□ 2.17
BRCA1-223ENST00000494123 DCAF1Q9Y4B6 1507 aa28.59■■■□□ 2.17
BRCA1-223ENST00000494123 MYO15BQ96JP2 1530 aa28.56■■■□□ 2.16
BRCA1-223ENST00000494123 UNC13AQ9UPW8 1703 aa27.96■■■□□ 2.07
BRCA1-223ENST00000494123 SCRIBQ14160 1630 aa27.96■■■□□ 2.07
BRCA1-223ENST00000494123 BICRAQ9NZM4 1560 aa27.67■■■□□ 2.02
BRCA1-223ENST00000494123 PABPN1Q86U42 306 aaKnown RBP eCLIP27.67■■■□□ 2.02
BRCA1-223ENST00000494123 SHROOM4Q9ULL8 1493 aa27.58■■■□□ 2.01
BRCA1-223ENST00000494123 EIF4G1Q04637 1599 aaKnown RBP26.94■■□□□ 1.9
BRCA1-223ENST00000494123 CECR2Q9BXF3 1484 aa26.87■■□□□ 1.89
BRCA1-223ENST00000494123 BAZ1AQ9NRL2 1556 aaPredicted RBP26.78■■□□□ 1.88
BRCA1-223ENST00000494123 SMARCA4P51532 1647 aa26.75■■□□□ 1.87
BRCA1-223ENST00000494123 CC2D2AQ9P2K1 1620 aa26.74■■□□□ 1.87
BRCA1-223ENST00000494123 DNAJC5BQ9UF47 199 aa26.69■■□□□ 1.86
BRCA1-223ENST00000494123 MROH2BQ7Z745 1585 aa26.64■■□□□ 1.85
BRCA1-223ENST00000494123 SMARCA2P51531 1590 aa26.51■■□□□ 1.83
BRCA1-223ENST00000494123 ATAD2BQ9ULI0 1458 aa26.48■■□□□ 1.83
BRCA1-223ENST00000494123 RSF1Q96T23 1441 aaPredicted RBP26.47■■□□□ 1.83
BRCA1-223ENST00000494123 PEG3Q9GZU2 1588 aa26.45■■□□□ 1.83
BRCA1-223ENST00000494123 WIZO95785 1651 aa26.4■■□□□ 1.82
BRCA1-223ENST00000494123 NCAPD3P42695 1498 aa26.4■■□□□ 1.82
BRCA1-223ENST00000494123 HMGXB3Q12766 1538 aa26.33■■□□□ 1.81
BRCA1-223ENST00000494123 BAZ1BQ9UIG0 1483 aaKnown RBP26.32■■□□□ 1.8
BRCA1-223ENST00000494123 SUPT5HO00267 1087 aaKnown RBP26.17■■□□□ 1.78
BRCA1-223ENST00000494123 TOP2AP11388 1531 aaKnown RBP26.14■■□□□ 1.78
BRCA1-223ENST00000494123 CCDC88BA6NC98 1476 aa25.81■■□□□ 1.72
BRCA1-223ENST00000494123 LAMC3Q9Y6N6 1575 aa25.67■■□□□ 1.7
BRCA1-223ENST00000494123 NESP48681 1621 aa25.67■■□□□ 1.7
BRCA1-223ENST00000494123 CADPSQ9ULU8 1353 aa25.66■■□□□ 1.7
BRCA1-223ENST00000494123 CFTRP13569 1480 aa25.59■■□□□ 1.69
BRCA1-223ENST00000494123 PRDM2Q13029 1718 aa25.49■■□□□ 1.67
BRCA1-223ENST00000494123 PDS5BQ9NTI5 1447 aa25.49■■□□□ 1.67
BRCA1-223ENST00000494123 ERCC6Q03468 1493 aa25.47■■□□□ 1.67
BRCA1-223ENST00000494123 KIF21AQ7Z4S6 1674 aa25.41■■□□□ 1.66
BRCA1-223ENST00000494123 FANCD2Q9BXW9 1451 aa25.39■■□□□ 1.65
BRCA1-223ENST00000494123 CEP164Q9UPV0 1460 aa25.34■■□□□ 1.65
BRCA1-223ENST00000494123 MRC2Q9UBG0 1479 aa25.2■■□□□ 1.63
BRCA1-223ENST00000494123 THOC2Q8NI27 1593 aaKnown RBP25.2■■□□□ 1.62
BRCA1-223ENST00000494123 WDR62O43379 1518 aa25.1■■□□□ 1.61
BRCA1-223ENST00000494123 URB2Q14146 1524 aaKnown RBP25.09■■□□□ 1.61
BRCA1-223ENST00000494123 ABCC8Q09428 1581 aa25.05■■□□□ 1.6
BRCA1-223ENST00000494123 DNMBPQ6XZF7 1577 aa25.04■■□□□ 1.6
BRCA1-223ENST00000494123 TOPBP1Q92547 1522 aa25.02■■□□□ 1.6
BRCA1-223ENST00000494123 CUX2O14529 1486 aa25.01■■□□□ 1.59
BRCA1-223ENST00000494123 WRNQ14191 1432 aaPredicted RBP eCLIP24.98■■□□□ 1.59
BRCA1-223ENST00000494123 CUX1P39880 1505 aa24.97■■□□□ 1.59
BRCA1-223ENST00000494123 SYNJ1O43426 1573 aa24.89■■□□□ 1.58
BRCA1-223ENST00000494123 TOP2BQ02880 1626 aa24.88■■□□□ 1.57
BRCA1-223ENST00000494123 BIVM-ERCC5R4GMW8 1640 aa24.88■■□□□ 1.57
BRCA1-223ENST00000494123 FGD5Q6ZNL6 1462 aa24.84■■□□□ 1.57
BRCA1-223ENST00000494123 POLA1P09884 1462 aaPredicted RBP24.84■■□□□ 1.57
BRCA1-223ENST00000494123 IFT140Q96RY7 1462 aa24.78■■□□□ 1.56
BRCA1-223ENST00000494123 SOGA1O94964 1423 aa24.75■■□□□ 1.55
BRCA1-223ENST00000494123 RAD54L2Q9Y4B4 1467 aa24.73■■□□□ 1.55
BRCA1-223ENST00000494123 TARBP1Q13395 1621 aaKnown RBP24.71■■□□□ 1.55
BRCA1-223ENST00000494123 TRIM41Q8WV44 630 aa24.68■■□□□ 1.54
BRCA1-223ENST00000494123 WDR97A6NE52 1622 aa24.62■■□□□ 1.53
BRCA1-223ENST00000494123 ZNF608Q9ULD9 1512 aaPredicted RBP24.61■■□□□ 1.53
BRCA1-223ENST00000494123 ABCA10Q8WWZ4 1543 aa24.61■■□□□ 1.53
BRCA1-223ENST00000494123 CHIC1Q5VXU3 224 aa24.6■■□□□ 1.53
BRCA1-223ENST00000494123 EIF4G3O43432 1585 aaKnown RBP24.57■■□□□ 1.52
BRCA1-223ENST00000494123 TDRD9Q8NDG6 1382 aaKnown RBP24.55■■□□□ 1.52
BRCA1-223ENST00000494123 AQRO60306 1485 aaKnown RBP eCLIP24.53■■□□□ 1.52
BRCA1-223ENST00000494123 ABCA5Q8WWZ7 1642 aa24.49■■□□□ 1.51
BRCA1-223ENST00000494123 GAPVD1Q14C86 1478 aa24.47■■□□□ 1.51
BRCA1-223ENST00000494123 KIF27Q86VH2 1401 aa24.44■■□□□ 1.5
BRCA1-223ENST00000494123 PBRM1Q86U86 1689 aa24.43■■□□□ 1.5
BRCA1-223ENST00000494123 GRIN2BQ13224 1484 aa24.42■■□□□ 1.5
BRCA1-223ENST00000494123 SNAPC4Q5SXM2 1469 aa24.33■■□□□ 1.49
BRCA1-223ENST00000494123 ERICH3Q5RHP9 1530 aa24.33■■□□□ 1.49
BRCA1-223ENST00000494123 MAGI1Q96QZ7 1491 aaPredicted RBP24.31■■□□□ 1.48
BRCA1-223ENST00000494123 RUSC2Q8N2Y8 1516 aa24.3■■□□□ 1.48
BRCA1-223ENST00000494123 IGF1RP08069 1367 aa24.23■■□□□ 1.47
BRCA1-223ENST00000494123 ADAMTS12P58397 1594 aa24.23■■□□□ 1.47
BRCA1-223ENST00000494123 EEA1Q15075 1411 aa24.23■■□□□ 1.47
BRCA1-223ENST00000494123 CUL7Q14999 1698 aa24.22■■□□□ 1.47
BRCA1-223ENST00000494123 FBLN2P98095 1184 aa24.21■■□□□ 1.47
BRCA1-223ENST00000494123 SYNJ2O15056 1496 aa24.21■■□□□ 1.47
BRCA1-223ENST00000494123 FHAD1B1AJZ9 1412 aa24.2■■□□□ 1.46
BRCA1-223ENST00000494123 CHD1O14646 1710 aa24.19■■□□□ 1.46
BRCA1-223ENST00000494123 CHMP7Q8WUX9 453 aaPredicted RBP24.19■■□□□ 1.46
BRCA1-223ENST00000494123 FAM9AQ8IZU1 332 aaPredicted RBP24.18■■□□□ 1.46
BRCA1-223ENST00000494123 CARMIL1Q5VZK9 1371 aa24.13■■□□□ 1.45
BRCA1-223ENST00000494123 CSRNP3Q8WYN3 585 aa24.13■■□□□ 1.45
BRCA1-223ENST00000494123 GRIN2AQ12879 1464 aa24.1■■□□□ 1.45
BRCA1-223ENST00000494123 OSCARQ8IYS5 282 aa24.06■■□□□ 1.44
BRCA1-223ENST00000494123 RAPGEF2Q9Y4G8 1499 aa24.04■■□□□ 1.44
BRCA1-223ENST00000494123 PRXQ9BXM0 1461 aa24.03■■□□□ 1.44
BRCA1-223ENST00000494123 CEP170Q5SW79 1584 aa23.96■■□□□ 1.43
BRCA1-223ENST00000494123 KIF21BO75037 1637 aa23.95■■□□□ 1.42
BRCA1-223ENST00000494123 NUP160Q12769 1436 aa23.95■■□□□ 1.42
BRCA1-223ENST00000494123 CLASP1Q7Z460 1538 aa23.89■■□□□ 1.42
BRCA1-223ENST00000494123 EHMT2Q96KQ7 1210 aa23.86■■□□□ 1.41
BRCA1-223ENST00000494123 GOLGA3Q08378 1498 aa23.85■■□□□ 1.41
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms