RNA–Protein interactions for RNA: ENST00000493660.5

SMARCE1-211, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1, humanhuman

TSL 3

Gene SMARCE1, Length 2,284 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCE1-211ENST00000493660 NISCHQ9Y2I1 1504 aa16.43■□□□□ 0.22
SMARCE1-211ENST00000493660 CCDC180Q9P1Z9 1646 aa14.5□□□□□ -0.09
SMARCE1-211ENST00000493660 AEBP2Q6ZN18 517 aaPredicted RBP13.99□□□□□ -0.17
SMARCE1-211ENST00000493660 ZCCHC6Q5VYS8 1495 aaKnown RBP13.8□□□□□ -0.2
SMARCE1-211ENST00000493660 DCAF1Q9Y4B6 1507 aa13.67□□□□□ -0.22
SMARCE1-211ENST00000493660 ABCC9O60706 1549 aa13.61□□□□□ -0.23
SMARCE1-211ENST00000493660 MYO15BQ96JP2 1530 aa13.56□□□□□ -0.24
SMARCE1-211ENST00000493660 NACADO15069 1562 aa13.47□□□□□ -0.25
SMARCE1-211ENST00000493660 DCAF8L2P0C7V8 631 aa13.39□□□□□ -0.27
SMARCE1-211ENST00000493660 RB1CC1Q8TDY2 1594 aa13.37□□□□□ -0.27
SMARCE1-211ENST00000493660 CHIC1Q5VXU3 224 aa13.24□□□□□ -0.29
SMARCE1-211ENST00000493660 SCRIBQ14160 1630 aa13.17□□□□□ -0.3
SMARCE1-211ENST00000493660 SHROOM4Q9ULL8 1493 aa13.14□□□□□ -0.31
SMARCE1-211ENST00000493660 UNC13AQ9UPW8 1703 aa13.12□□□□□ -0.31
SMARCE1-211ENST00000493660 POTEDQ86YR6 584 aa12.99□□□□□ -0.33
SMARCE1-211ENST00000493660 BICRAQ9NZM4 1560 aa12.94□□□□□ -0.34
SMARCE1-211ENST00000493660 PABPN1Q86U42 306 aaKnown RBP eCLIP12.73□□□□□ -0.37
SMARCE1-211ENST00000493660 BAZ1AQ9NRL2 1556 aaPredicted RBP12.72□□□□□ -0.37
SMARCE1-211ENST00000493660 CECR2Q9BXF3 1484 aa12.7□□□□□ -0.38
SMARCE1-211ENST00000493660 SMARCA4P51532 1647 aa12.68□□□□□ -0.38
SMARCE1-211ENST00000493660 RSF1Q96T23 1441 aaPredicted RBP12.65□□□□□ -0.38
SMARCE1-211ENST00000493660 MROH2BQ7Z745 1585 aa12.65□□□□□ -0.38
SMARCE1-211ENST00000493660 SUPT5HO00267 1087 aaKnown RBP12.58□□□□□ -0.4
SMARCE1-211ENST00000493660 PEG3Q9GZU2 1588 aa12.57□□□□□ -0.4
SMARCE1-211ENST00000493660 WIZO95785 1651 aa12.55□□□□□ -0.4
SMARCE1-211ENST00000493660 EIF4G1Q04637 1599 aaKnown RBP12.55□□□□□ -0.4
SMARCE1-211ENST00000493660 SMARCA2P51531 1590 aa12.5□□□□□ -0.41
SMARCE1-211ENST00000493660 PELP1Q8IZL8 1130 aaKnown RBP12.48□□□□□ -0.41
SMARCE1-211ENST00000493660 TOP2AP11388 1531 aaKnown RBP12.47□□□□□ -0.41
SMARCE1-211ENST00000493660 ATAD2BQ9ULI0 1458 aa12.46□□□□□ -0.42
SMARCE1-211ENST00000493660 HMGXB3Q12766 1538 aa12.42□□□□□ -0.42
SMARCE1-211ENST00000493660 NCAPD3P42695 1498 aa12.39□□□□□ -0.43
SMARCE1-211ENST00000493660 CC2D2AQ9P2K1 1620 aa12.39□□□□□ -0.43
SMARCE1-211ENST00000493660 BAZ1BQ9UIG0 1483 aaKnown RBP12.38□□□□□ -0.43
SMARCE1-211ENST00000493660 MYT1Q01538 1121 aa12.31□□□□□ -0.44
SMARCE1-211ENST00000493660 CCDC88BA6NC98 1476 aa12.28□□□□□ -0.44
SMARCE1-211ENST00000493660 SENP3Q9H4L4 574 aaPredicted RBP12.16□□□□□ -0.46
SMARCE1-211ENST00000493660 PRDM2Q13029 1718 aa12.15□□□□□ -0.46
SMARCE1-211ENST00000493660 CFTRP13569 1480 aa12.07□□□□□ -0.48
SMARCE1-211ENST00000493660 LAMC3Q9Y6N6 1575 aa12.03□□□□□ -0.48
SMARCE1-211ENST00000493660 CADPSQ9ULU8 1353 aa12.03□□□□□ -0.48
SMARCE1-211ENST00000493660 DNAJC5BQ9UF47 199 aa12.02□□□□□ -0.49
SMARCE1-211ENST00000493660 ABCC8Q09428 1581 aa11.95□□□□□ -0.5
SMARCE1-211ENST00000493660 BIVM-ERCC5R4GMW8 1640 aa11.93□□□□□ -0.5
SMARCE1-211ENST00000493660 WRNQ14191 1432 aaPredicted RBP eCLIP11.92□□□□□ -0.5
SMARCE1-211ENST00000493660 NESP48681 1621 aa11.91□□□□□ -0.5
SMARCE1-211ENST00000493660 TOP2BQ02880 1626 aa11.9□□□□□ -0.5
SMARCE1-211ENST00000493660 FANCD2Q9BXW9 1451 aa11.9□□□□□ -0.5
SMARCE1-211ENST00000493660 TRIM41Q8WV44 630 aa11.9□□□□□ -0.5
SMARCE1-211ENST00000493660 SYNJ1O43426 1573 aa11.9□□□□□ -0.51
SMARCE1-211ENST00000493660 PDS5BQ9NTI5 1447 aa11.88□□□□□ -0.51
SMARCE1-211ENST00000493660 PHF23Q9BUL5 403 aaPredicted RBP11.87□□□□□ -0.51
SMARCE1-211ENST00000493660 KIF21AQ7Z4S6 1674 aa11.87□□□□□ -0.51
SMARCE1-211ENST00000493660 CEP164Q9UPV0 1460 aa11.86□□□□□ -0.51
SMARCE1-211ENST00000493660 CUX1P39880 1505 aa11.85□□□□□ -0.51
SMARCE1-211ENST00000493660 DNMBPQ6XZF7 1577 aa11.83□□□□□ -0.52
SMARCE1-211ENST00000493660 TTBK1Q5TCY1 1321 aaPredicted RBP11.83□□□□□ -0.52
SMARCE1-211ENST00000493660 TOPBP1Q92547 1522 aa11.78□□□□□ -0.52
SMARCE1-211ENST00000493660 EEA1Q15075 1411 aa11.76□□□□□ -0.53
SMARCE1-211ENST00000493660 URB2Q14146 1524 aaKnown RBP11.76□□□□□ -0.53
SMARCE1-211ENST00000493660 MRC2Q9UBG0 1479 aa11.75□□□□□ -0.53
SMARCE1-211ENST00000493660 FGD5Q6ZNL6 1462 aa11.73□□□□□ -0.53
SMARCE1-211ENST00000493660 WDR62O43379 1518 aa11.72□□□□□ -0.53
SMARCE1-211ENST00000493660 THOC2Q8NI27 1593 aaKnown RBP11.71□□□□□ -0.53
SMARCE1-211ENST00000493660 ERCC6Q03468 1493 aa11.71□□□□□ -0.54
SMARCE1-211ENST00000493660 WDR97A6NE52 1622 aa11.7□□□□□ -0.54
SMARCE1-211ENST00000493660 POLA1P09884 1462 aaPredicted RBP11.69□□□□□ -0.54
SMARCE1-211ENST00000493660 SOGA1O94964 1423 aa11.68□□□□□ -0.54
SMARCE1-211ENST00000493660 ABCA10Q8WWZ4 1543 aa11.66□□□□□ -0.54
SMARCE1-211ENST00000493660 KIF27Q86VH2 1401 aa11.64□□□□□ -0.55
SMARCE1-211ENST00000493660 TARBP1Q13395 1621 aaKnown RBP11.64□□□□□ -0.55
SMARCE1-211ENST00000493660 RUSC2Q8N2Y8 1516 aa11.64□□□□□ -0.55
SMARCE1-211ENST00000493660 KIF21BO75037 1637 aa11.63□□□□□ -0.55
SMARCE1-211ENST00000493660 CUX2O14529 1486 aa11.61□□□□□ -0.55
SMARCE1-211ENST00000493660 HRCP23327 699 aa11.61□□□□□ -0.55
SMARCE1-211ENST00000493660 ABCA5Q8WWZ7 1642 aa11.6□□□□□ -0.55
SMARCE1-211ENST00000493660 RAD54L2Q9Y4B4 1467 aa11.6□□□□□ -0.55
SMARCE1-211ENST00000493660 CSRNP3Q8WYN3 585 aa11.6□□□□□ -0.55
SMARCE1-211ENST00000493660 IFT140Q96RY7 1462 aa11.59□□□□□ -0.55
SMARCE1-211ENST00000493660 FAM9AQ8IZU1 332 aaPredicted RBP11.59□□□□□ -0.55
SMARCE1-211ENST00000493660 ERICH3Q5RHP9 1530 aa11.57□□□□□ -0.56
SMARCE1-211ENST00000493660 CUL7Q14999 1698 aa11.56□□□□□ -0.56
SMARCE1-211ENST00000493660 GOLGA3Q08378 1498 aa11.55□□□□□ -0.56
SMARCE1-211ENST00000493660 PBRM1Q86U86 1689 aa11.55□□□□□ -0.56
SMARCE1-211ENST00000493660 PRXQ9BXM0 1461 aa11.54□□□□□ -0.56
SMARCE1-211ENST00000493660 GAPVD1Q14C86 1478 aa11.53□□□□□ -0.56
SMARCE1-211ENST00000493660 IGF1RP08069 1367 aa11.51□□□□□ -0.57
SMARCE1-211ENST00000493660 EIF4G3O43432 1585 aaKnown RBP11.5□□□□□ -0.57
SMARCE1-211ENST00000493660 LOC105371045A0A1W2PR82 267 aa11.5□□□□□ -0.57
SMARCE1-211ENST00000493660 TNIKQ9UKE5 1360 aa11.48□□□□□ -0.57
SMARCE1-211ENST00000493660 RAPGEF2Q9Y4G8 1499 aa11.48□□□□□ -0.57
SMARCE1-211ENST00000493660 TDRD9Q8NDG6 1382 aaKnown RBP11.47□□□□□ -0.57
SMARCE1-211ENST00000493660 GRIN2BQ13224 1484 aa11.47□□□□□ -0.57
SMARCE1-211ENST00000493660 CARMIL1Q5VZK9 1371 aa11.46□□□□□ -0.58
SMARCE1-211ENST00000493660 ZNF608Q9ULD9 1512 aaPredicted RBP11.46□□□□□ -0.58
SMARCE1-211ENST00000493660 ADAMTS12P58397 1594 aa11.46□□□□□ -0.58
SMARCE1-211ENST00000493660 AQRO60306 1485 aaKnown RBP eCLIP11.44□□□□□ -0.585e-8■■■□□ 18.8
SMARCE1-211ENST00000493660 CTTNBP2Q8WZ74 1663 aa11.42□□□□□ -0.58
SMARCE1-211ENST00000493660 MAGI1Q96QZ7 1491 aaPredicted RBP11.41□□□□□ -0.58
SMARCE1-211ENST00000493660 FHAD1B1AJZ9 1412 aa11.41□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 79.4 ms