RNA–Protein interactions for RNA: ENST00000493303.1

CSMD3-207, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best)

Gene CSMD3, Length 5,703 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-207ENST00000493303 CCDC180Q9P1Z9 1646 aa7.07□□□□□ -1.28
CSMD3-207ENST00000493303 NISCHQ9Y2I1 1504 aa6.98□□□□□ -1.29
CSMD3-207ENST00000493303 MYO15BQ96JP2 1530 aa6.83□□□□□ -1.32
CSMD3-207ENST00000493303 SHROOM4Q9ULL8 1493 aa6.74□□□□□ -1.33
CSMD3-207ENST00000493303 UNC13AQ9UPW8 1703 aa6.73□□□□□ -1.33
CSMD3-207ENST00000493303 FAM9AQ8IZU1 332 aaPredicted RBP6.6□□□□□ -1.35
CSMD3-207ENST00000493303 BICRAQ9NZM4 1560 aa6.55□□□□□ -1.36
CSMD3-207ENST00000493303 DCAF1Q9Y4B6 1507 aa6.46□□□□□ -1.38
CSMD3-207ENST00000493303 DCAF8L2P0C7V8 631 aa6.4□□□□□ -1.39
CSMD3-207ENST00000493303 NACADO15069 1562 aa6.34□□□□□ -1.39
CSMD3-207ENST00000493303 FOXD1Q16676 465 aa6.24□□□□□ -1.41
CSMD3-207ENST00000493303 RB1CC1Q8TDY2 1594 aa6.2□□□□□ -1.42
CSMD3-207ENST00000493303 PEG3Q9GZU2 1588 aa6.18□□□□□ -1.42
CSMD3-207ENST00000493303 AEBP2Q6ZN18 517 aaPredicted RBP6.1□□□□□ -1.43
CSMD3-207ENST00000493303 DCAF8L1A6NGE4 600 aa6.07□□□□□ -1.44
CSMD3-207ENST00000493303 THOC2Q8NI27 1593 aaKnown RBP6.06□□□□□ -1.44
CSMD3-207ENST00000493303 DNAJC5BQ9UF47 199 aa6.02□□□□□ -1.45
CSMD3-207ENST00000493303 CUX2O14529 1486 aa6□□□□□ -1.45
CSMD3-207ENST00000493303 EIF4G1Q04637 1599 aaKnown RBP5.97□□□□□ -1.45
CSMD3-207ENST00000493303 CC2D2AQ9P2K1 1620 aa5.96□□□□□ -1.46
CSMD3-207ENST00000493303 PRDM2Q13029 1718 aa5.94□□□□□ -1.46
CSMD3-207ENST00000493303 HMGXB3Q12766 1538 aa5.93□□□□□ -1.46
CSMD3-207ENST00000493303 CHIC1Q5VXU3 224 aa5.93□□□□□ -1.46
CSMD3-207ENST00000493303 DNAJC5Q9H3Z4 198 aa5.91□□□□□ -1.46
CSMD3-207ENST00000493303 ZCCHC6Q5VYS8 1495 aaKnown RBP5.9□□□□□ -1.46
CSMD3-207ENST00000493303 ABCC9O60706 1549 aa5.85□□□□□ -1.47
CSMD3-207ENST00000493303 SMARCA2P51531 1590 aa5.84□□□□□ -1.47
CSMD3-207ENST00000493303 WDR97A6NE52 1622 aa5.79□□□□□ -1.48
CSMD3-207ENST00000493303 NCAPD3P42695 1498 aa5.79□□□□□ -1.48
CSMD3-207ENST00000493303 WDR62O43379 1518 aa5.77□□□□□ -1.49
CSMD3-207ENST00000493303 SCRIBQ14160 1630 aa5.73□□□□□ -1.49
CSMD3-207ENST00000493303 LAMC3Q9Y6N6 1575 aa5.73□□□□□ -1.49
CSMD3-207ENST00000493303 KIF21AQ7Z4S6 1674 aa5.64□□□□□ -1.51
CSMD3-207ENST00000493303 MYT1LQ9UL68 1186 aa5.61□□□□□ -1.51
CSMD3-207ENST00000493303 SHROOM2Q13796 1616 aa5.61□□□□□ -1.51
CSMD3-207ENST00000493303 ESF1Q9H501 851 aaKnown RBP5.61□□□□□ -1.51
CSMD3-207ENST00000493303 CLASP1Q7Z460 1538 aa5.59□□□□□ -1.51
CSMD3-207ENST00000493303 SMARCA4P51532 1647 aa5.58□□□□□ -1.52
CSMD3-207ENST00000493303 CECR2Q9BXF3 1484 aa5.58□□□□□ -1.52
CSMD3-207ENST00000493303 MAP3K9P80192 1104 aa5.58□□□□□ -1.52
CSMD3-207ENST00000493303 HAP1P54257 671 aaPredicted RBP5.57□□□□□ -1.52
CSMD3-207ENST00000493303 TARBP1Q13395 1621 aaKnown RBP5.55□□□□□ -1.52
CSMD3-207ENST00000493303 KIF13AQ9H1H9 1805 aa5.54□□□□□ -1.52
CSMD3-207ENST00000493303 PHF23Q9BUL5 403 aaPredicted RBP5.54□□□□□ -1.52
CSMD3-207ENST00000493303 NPM1P06748 294 aaKnown RBP eCLIP5.54□□□□□ -1.52
CSMD3-207ENST00000493303 KRI1Q8N9T8 703 aaKnown RBP5.54□□□□□ -1.52
CSMD3-207ENST00000493303 CSRNP3Q8WYN3 585 aa5.54□□□□□ -1.52
CSMD3-207ENST00000493303 BAZ1AQ9NRL2 1556 aaPredicted RBP5.5□□□□□ -1.53
CSMD3-207ENST00000493303 RIMBP3CA6NJZ7 1639 aa5.49□□□□□ -1.53
CSMD3-207ENST00000493303 RIMBP3BA6NNM3 1639 aa5.49□□□□□ -1.53
CSMD3-207ENST00000493303 RIMBP3Q9UFD9 1639 aa5.49□□□□□ -1.53
CSMD3-207ENST00000493303 NESP48681 1621 aa5.49□□□□□ -1.53
CSMD3-207ENST00000493303 ATAD2BQ9ULI0 1458 aa5.48□□□□□ -1.53
CSMD3-207ENST00000493303 BAZ1BQ9UIG0 1483 aaKnown RBP5.48□□□□□ -1.53
CSMD3-207ENST00000493303 PPRC1Q5VV67 1664 aaKnown RBP5.47□□□□□ -1.53
CSMD3-207ENST00000493303 EHMT2Q96KQ7 1210 aa5.46□□□□□ -1.53
CSMD3-207ENST00000493303 SUPT5HO00267 1087 aaKnown RBP5.45□□□□□ -1.54
CSMD3-207ENST00000493303 SLC24A1O60721 1099 aa5.43□□□□□ -1.54
CSMD3-207ENST00000493303 NEFMP07197 916 aa5.42□□□□□ -1.54
CSMD3-207ENST00000493303 HMGB2P26583 209 aaKnown RBP5.42□□□□□ -1.54
CSMD3-207ENST00000493303 TRHP20396 242 aaPredicted RBP5.4□□□□□ -1.54
CSMD3-207ENST00000493303 ANO8Q9HCE9 1232 aaPredicted RBP5.4□□□□□ -1.55
CSMD3-207ENST00000493303 ZNF710Q8N1W2 664 aa5.39□□□□□ -1.55
CSMD3-207ENST00000493303 WDHD1O75717 1129 aaPredicted RBP5.38□□□□□ -1.55
CSMD3-207ENST00000493303 PLPPR3Q6T4P5 718 aa5.37□□□□□ -1.55
CSMD3-207ENST00000493303 CFTRP13569 1480 aa5.37□□□□□ -1.55
CSMD3-207ENST00000493303 RSF1Q96T23 1441 aaPredicted RBP5.36□□□□□ -1.55
CSMD3-207ENST00000493303 ABCA5Q8WWZ7 1642 aa5.35□□□□□ -1.55
CSMD3-207ENST00000493303 CHD1O14646 1710 aa5.35□□□□□ -1.55
CSMD3-207ENST00000493303 APLP2Q06481 763 aa5.35□□□□□ -1.55
CSMD3-207ENST00000493303 KDM6BO15054 1643 aa5.35□□□□□ -1.55
CSMD3-207ENST00000493303 GRWD1Q9BQ67 446 aaKnown RBP eCLIP5.32□□□□□ -1.56
CSMD3-207ENST00000493303 SF3B2Q13435 895 aaKnown RBP5.32□□□□□ -1.56
CSMD3-207ENST00000493303 BCANQ96GW7 911 aa5.3□□□□□ -1.56
CSMD3-207ENST00000493303 EIF4G3O43432 1585 aaKnown RBP5.29□□□□□ -1.56
CSMD3-207ENST00000493303 MRC2Q9UBG0 1479 aa5.29□□□□□ -1.56
CSMD3-207ENST00000493303 ARHGEF11O15085 1522 aa5.29□□□□□ -1.56
CSMD3-207ENST00000493303 MAPKBP1O60336 1514 aa5.29□□□□□ -1.56
CSMD3-207ENST00000493303 GLI2P10070 1586 aa5.29□□□□□ -1.56
CSMD3-207ENST00000493303 SSFA2P28290 1259 aa5.28□□□□□ -1.56
CSMD3-207ENST00000493303 URB2Q14146 1524 aaKnown RBP5.28□□□□□ -1.56
CSMD3-207ENST00000493303 CHMP7Q8WUX9 453 aaPredicted RBP5.28□□□□□ -1.56
CSMD3-207ENST00000493303 TRIM41Q8WV44 630 aa5.27□□□□□ -1.57
CSMD3-207ENST00000493303 ARAP1Q96P48 1450 aa5.27□□□□□ -1.57
CSMD3-207ENST00000493303 ATP1B4Q9UN42 357 aaPredicted RBP5.26□□□□□ -1.57
CSMD3-207ENST00000493303 RTN4Q9NQC3 1192 aaKnown RBP5.26□□□□□ -1.57
CSMD3-207ENST00000493303 NPM2Q86SE8 214 aaKnown RBP5.25□□□□□ -1.57
CSMD3-207ENST00000493303 TMX4Q9H1E5 349 aaPredicted RBP5.25□□□□□ -1.57
CSMD3-207ENST00000493303 SCAF1Q9H7N4 1312 aaKnown RBP5.25□□□□□ -1.57
CSMD3-207ENST00000493303 MEX3CQ5U5Q3 659 aaKnown RBP5.24□□□□□ -1.57
CSMD3-207ENST00000493303 FKBP8Q14318 412 aa5.24□□□□□ -1.57
CSMD3-207ENST00000493303 PBRM1Q86U86 1689 aa5.23□□□□□ -1.57
CSMD3-207ENST00000493303 BIVM-ERCC5R4GMW8 1640 aa5.22□□□□□ -1.57
CSMD3-207ENST00000493303 KDM5BQ9UGL1 1544 aa5.22□□□□□ -1.57
CSMD3-207ENST00000493303 SLC4A1APQ9BWU0 796 aaKnown RBP5.22□□□□□ -1.57
CSMD3-207ENST00000493303 IL27Q8NEV9 243 aa5.22□□□□□ -1.57
CSMD3-207ENST00000493303 MAPK8IP2Q13387 824 aaPredicted RBP5.21□□□□□ -1.57
CSMD3-207ENST00000493303 DNMBPQ6XZF7 1577 aa5.21□□□□□ -1.58
CSMD3-207ENST00000493303 MAP3K4Q9Y6R4 1608 aa5.21□□□□□ -1.58
CSMD3-207ENST00000493303 TOP2AP11388 1531 aaKnown RBP5.2□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 82.6 ms