RNA–Protein interactions for RNA: ENST00000492980.1

CCDC88B-208, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 5

Gene CCDC88B, Length 2,118 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-208ENST00000492980 NISCHQ9Y2I1 1504 aa46.09■■■■■ 4.97
CCDC88B-208ENST00000492980 CCDC180Q9P1Z9 1646 aa39.78■■■■□ 3.96
CCDC88B-208ENST00000492980 ZCCHC6Q5VYS8 1495 aaKnown RBP38.88■■■■□ 3.81
CCDC88B-208ENST00000492980 SHROOM4Q9ULL8 1493 aa38.28■■■■□ 3.72
CCDC88B-208ENST00000492980 DCAF1Q9Y4B6 1507 aa38.03■■■■□ 3.68
CCDC88B-208ENST00000492980 DCAF8L2P0C7V8 631 aa37.9■■■■□ 3.66
CCDC88B-208ENST00000492980 MYO15BQ96JP2 1530 aa37.26■■■■□ 3.56
CCDC88B-208ENST00000492980 SUPT5HO00267 1087 aaKnown RBP37.16■■■■□ 3.54
CCDC88B-208ENST00000492980 ABCC9O60706 1549 aa37.08■■■■□ 3.53
CCDC88B-208ENST00000492980 NACADO15069 1562 aa36.87■■■■□ 3.49
CCDC88B-208ENST00000492980 SCRIBQ14160 1630 aa36.83■■■■□ 3.49
CCDC88B-208ENST00000492980 RB1CC1Q8TDY2 1594 aa36.39■■■■□ 3.42
CCDC88B-208ENST00000492980 RSF1Q96T23 1441 aaPredicted RBP36.08■■■■□ 3.37
CCDC88B-208ENST00000492980 CHIC1Q5VXU3 224 aa35.94■■■■□ 3.34
CCDC88B-208ENST00000492980 CECR2Q9BXF3 1484 aa35.84■■■■□ 3.33
CCDC88B-208ENST00000492980 UNC13AQ9UPW8 1703 aa35.82■■■■□ 3.32
CCDC88B-208ENST00000492980 MROH2BQ7Z745 1585 aa35.7■■■■□ 3.31
CCDC88B-208ENST00000492980 BAZ1AQ9NRL2 1556 aaPredicted RBP35.51■■■■□ 3.27
CCDC88B-208ENST00000492980 WIZO95785 1651 aa35.48■■■■□ 3.27
CCDC88B-208ENST00000492980 BICRAQ9NZM4 1560 aa35.37■■■■□ 3.25
CCDC88B-208ENST00000492980 SMARCA4P51532 1647 aa35.29■■■■□ 3.24
CCDC88B-208ENST00000492980 PABPN1Q86U42 306 aaKnown RBP eCLIP35.14■■■■□ 3.22
CCDC88B-208ENST00000492980 TOP2AP11388 1531 aaKnown RBP35.04■■■■□ 3.2
CCDC88B-208ENST00000492980 EIF4G1Q04637 1599 aaKnown RBP34.84■■■■□ 3.17
CCDC88B-208ENST00000492980 TRIM41Q8WV44 630 aa34.82■■■■□ 3.16
CCDC88B-208ENST00000492980 SMARCA2P51531 1590 aa34.78■■■■□ 3.16
CCDC88B-208ENST00000492980 PEG3Q9GZU2 1588 aa34.78■■■■□ 3.16
CCDC88B-208ENST00000492980 CCDC88BA6NC98 1476 aa34.74■■■■□ 3.15
CCDC88B-208ENST00000492980 LOC105371045A0A1W2PR82 267 aa34.66■■■■□ 3.14
CCDC88B-208ENST00000492980 ATAD2BQ9ULI0 1458 aa34.51■■■■□ 3.12
CCDC88B-208ENST00000492980 BAZ1BQ9UIG0 1483 aaKnown RBP34.36■■■■□ 3.09
CCDC88B-208ENST00000492980 ABCC8Q09428 1581 aa34.32■■■■□ 3.08
CCDC88B-208ENST00000492980 FAM9AQ8IZU1 332 aaPredicted RBP34.3■■■■□ 3.08
CCDC88B-208ENST00000492980 HMGXB3Q12766 1538 aa34.06■■■■□ 3.04
CCDC88B-208ENST00000492980 NCAPD3P42695 1498 aa34.04■■■■□ 3.04
CCDC88B-208ENST00000492980 WRNQ14191 1432 aaPredicted RBP eCLIP33.92■■■■□ 3.02
CCDC88B-208ENST00000492980 EHMT2Q96KQ7 1210 aa33.86■■■■□ 3.01
CCDC88B-208ENST00000492980 PCGF6Q9BYE7 350 aa33.86■■■■□ 3.01
CCDC88B-208ENST00000492980 SYNJ1O43426 1573 aa33.81■■■■□ 3
CCDC88B-208ENST00000492980 SOGA1O94964 1423 aa33.81■■■■□ 3
CCDC88B-208ENST00000492980 EEA1Q15075 1411 aa33.76■■■□□ 2.99
CCDC88B-208ENST00000492980 RUSC2Q8N2Y8 1516 aa33.67■■■□□ 2.98
CCDC88B-208ENST00000492980 TRIM26Q12899 539 aaPredicted RBP33.58■■■□□ 2.97
CCDC88B-208ENST00000492980 CSRNP3Q8WYN3 585 aa33.56■■■□□ 2.96
CCDC88B-208ENST00000492980 TOP2BQ02880 1626 aa33.56■■■□□ 2.96
CCDC88B-208ENST00000492980 CC2D2AQ9P2K1 1620 aa33.54■■■□□ 2.96
CCDC88B-208ENST00000492980 CFTRP13569 1480 aa33.52■■■□□ 2.96
CCDC88B-208ENST00000492980 BIVM-ERCC5R4GMW8 1640 aa33.51■■■□□ 2.95
CCDC88B-208ENST00000492980 HRCP23327 699 aa33.47■■■□□ 2.95
CCDC88B-208ENST00000492980 TNIKQ9UKE5 1360 aa33.42■■■□□ 2.94
CCDC88B-208ENST00000492980 PRDM2Q13029 1718 aa33.41■■■□□ 2.94
CCDC88B-208ENST00000492980 GOLGA3Q08378 1498 aa33.39■■■□□ 2.94
CCDC88B-208ENST00000492980 KIF21BO75037 1637 aa33.35■■■□□ 2.93
CCDC88B-208ENST00000492980 CEP162Q5TB80 1403 aa33.35■■■□□ 2.93
CCDC88B-208ENST00000492980 CUX1P39880 1505 aa33.32■■■□□ 2.93
CCDC88B-208ENST00000492980 CEP164Q9UPV0 1460 aa33.3■■■□□ 2.92
CCDC88B-208ENST00000492980 CADPSQ9ULU8 1353 aa33.24■■■□□ 2.91
CCDC88B-208ENST00000492980 UBTFP17480 764 aaKnown RBP33.23■■■□□ 2.91
CCDC88B-208ENST00000492980 RAPGEF2Q9Y4G8 1499 aa33.07■■■□□ 2.89
CCDC88B-208ENST00000492980 PPARGC1BQ86YN6 1023 aaKnown RBP33.02■■■□□ 2.88
CCDC88B-208ENST00000492980 ERICH3Q5RHP9 1530 aa32.96■■■□□ 2.87
CCDC88B-208ENST00000492980 KIF27Q86VH2 1401 aa32.96■■■□□ 2.87
CCDC88B-208ENST00000492980 PRXQ9BXM0 1461 aa32.96■■■□□ 2.87
CCDC88B-208ENST00000492980 FANCD2Q9BXW9 1451 aa32.91■■■□□ 2.86
CCDC88B-208ENST00000492980 CLIP1P30622 1438 aa32.9■■■□□ 2.86
CCDC88B-208ENST00000492980 FGD5Q6ZNL6 1462 aa32.83■■■□□ 2.85
CCDC88B-208ENST00000492980 NESP48681 1621 aa32.82■■■□□ 2.84
CCDC88B-208ENST00000492980 LAMC3Q9Y6N6 1575 aa32.76■■■□□ 2.84
CCDC88B-208ENST00000492980 CUX2O14529 1486 aa32.75■■■□□ 2.83
CCDC88B-208ENST00000492980 DNMBPQ6XZF7 1577 aa32.74■■■□□ 2.83
CCDC88B-208ENST00000492980 VPS8Q8N3P4 1428 aa32.72■■■□□ 2.83
CCDC88B-208ENST00000492980 TOPBP1Q92547 1522 aa32.65■■■□□ 2.82
CCDC88B-208ENST00000492980 IGF1RP08069 1367 aa32.63■■■□□ 2.81
CCDC88B-208ENST00000492980 TTBK1Q5TCY1 1321 aaPredicted RBP32.61■■■□□ 2.81
CCDC88B-208ENST00000492980 DNAJC5BQ9UF47 199 aa32.58■■■□□ 2.81
CCDC88B-208ENST00000492980 ZEB1P37275 1124 aaPredicted RBP32.57■■■□□ 2.8
CCDC88B-208ENST00000492980 RANGAP1P46060 587 aaPredicted RBP32.56■■■□□ 2.8
CCDC88B-208ENST00000492980 POLA1P09884 1462 aaPredicted RBP32.56■■■□□ 2.8
CCDC88B-208ENST00000492980 ARAP1Q96P48 1450 aa32.52■■■□□ 2.8
CCDC88B-208ENST00000492980 ABCA10Q8WWZ4 1543 aa32.52■■■□□ 2.8
CCDC88B-208ENST00000492980 RAD54L2Q9Y4B4 1467 aa32.5■■■□□ 2.79
CCDC88B-208ENST00000492980 URB2Q14146 1524 aaKnown RBP32.49■■■□□ 2.79
CCDC88B-208ENST00000492980 PDS5BQ9NTI5 1447 aa32.47■■■□□ 2.79
CCDC88B-208ENST00000492980 CARMIL1Q5VZK9 1371 aa32.46■■■□□ 2.79
CCDC88B-208ENST00000492980 KIF21AQ7Z4S6 1674 aa32.41■■■□□ 2.78
CCDC88B-208ENST00000492980 WDR97A6NE52 1622 aa32.38■■■□□ 2.77
CCDC88B-208ENST00000492980 ARHGAP35Q9NRY4 1499 aa32.36■■■□□ 2.77
CCDC88B-208ENST00000492980 APLP2Q06481 763 aa32.36■■■□□ 2.77
CCDC88B-208ENST00000492980 CUL7Q14999 1698 aa32.28■■■□□ 2.76
CCDC88B-208ENST00000492980 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP32.24■■■□□ 2.75
CCDC88B-208ENST00000492980 ABCA5Q8WWZ7 1642 aa32.22■■■□□ 2.75
CCDC88B-208ENST00000492980 CCER1Q8TC90 406 aaPredicted RBP32.15■■■□□ 2.74
CCDC88B-208ENST00000492980 TARBP1Q13395 1621 aaKnown RBP32.11■■■□□ 2.73
CCDC88B-208ENST00000492980 GAPVD1Q14C86 1478 aa32.09■■■□□ 2.73
CCDC88B-208ENST00000492980 TDRD9Q8NDG6 1382 aaKnown RBP32.09■■■□□ 2.73
CCDC88B-208ENST00000492980 CTTNBP2Q8WZ74 1663 aa32.08■■■□□ 2.73
CCDC88B-208ENST00000492980 KANK4Q5T7N3 995 aaPredicted RBP32.05■■■□□ 2.72
CCDC88B-208ENST00000492980 MRC2Q9UBG0 1479 aa32.05■■■□□ 2.72
CCDC88B-208ENST00000492980 EFCAB5A4FU69 1503 aa31.97■■■□□ 2.71
CCDC88B-208ENST00000492980 HNRNPUL2Q1KMD3 747 aaKnown RBP31.96■■■□□ 2.71
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms