RNA–Protein interactions for RNA: ENST00000492511.1

PDLIM1-204, Transcript of PDZ and LIM domain 1, humanhuman

TSL 2

Gene PDLIM1, Length 453 nt, Biotype processed transcript.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1-204ENST00000492511 NISCHQ9Y2I1 1504 aa17.58■□□□□ 0.41
PDLIM1-204ENST00000492511 CCDC180Q9P1Z9 1646 aa15.56■□□□□ 0.08
PDLIM1-204ENST00000492511 ABCC9O60706 1549 aa15.36■□□□□ 0.05
PDLIM1-204ENST00000492511 DCAF8L2P0C7V8 631 aa14.73□□□□□ -0.05
PDLIM1-204ENST00000492511 RB1CC1Q8TDY2 1594 aa14.69□□□□□ -0.06
PDLIM1-204ENST00000492511 NACADO15069 1562 aa14.68□□□□□ -0.06
PDLIM1-204ENST00000492511 ZCCHC6Q5VYS8 1495 aaKnown RBP14.63□□□□□ -0.07
PDLIM1-204ENST00000492511 MYO15BQ96JP2 1530 aa14.6□□□□□ -0.07
PDLIM1-204ENST00000492511 DCAF1Q9Y4B6 1507 aa14.53□□□□□ -0.08
PDLIM1-204ENST00000492511 PABPN1Q86U42 306 aaKnown RBP eCLIP14.4□□□□□ -0.1
PDLIM1-204ENST00000492511 UNC13AQ9UPW8 1703 aa14.33□□□□□ -0.12
PDLIM1-204ENST00000492511 BICRAQ9NZM4 1560 aa14.31□□□□□ -0.12
PDLIM1-204ENST00000492511 DNAJC5BQ9UF47 199 aa14.31□□□□□ -0.12
PDLIM1-204ENST00000492511 SCRIBQ14160 1630 aa14.24□□□□□ -0.13
PDLIM1-204ENST00000492511 SHROOM4Q9ULL8 1493 aa14.09□□□□□ -0.15
PDLIM1-204ENST00000492511 EIF4G1Q04637 1599 aaKnown RBP13.91□□□□□ -0.18
PDLIM1-204ENST00000492511 CC2D2AQ9P2K1 1620 aa13.86□□□□□ -0.19
PDLIM1-204ENST00000492511 CECR2Q9BXF3 1484 aa13.79□□□□□ -0.2
PDLIM1-204ENST00000492511 SMARCA4P51532 1647 aa13.61□□□□□ -0.23
PDLIM1-204ENST00000492511 NCAPD3P42695 1498 aa13.61□□□□□ -0.23
PDLIM1-204ENST00000492511 ATAD2BQ9ULI0 1458 aa13.61□□□□□ -0.23
PDLIM1-204ENST00000492511 BAZ1AQ9NRL2 1556 aaPredicted RBP13.58□□□□□ -0.23
PDLIM1-204ENST00000492511 MROH2BQ7Z745 1585 aa13.57□□□□□ -0.24
PDLIM1-204ENST00000492511 SMARCA2P51531 1590 aa13.53□□□□□ -0.24
PDLIM1-204ENST00000492511 PEG3Q9GZU2 1588 aa13.49□□□□□ -0.25
PDLIM1-204ENST00000492511 HMGXB3Q12766 1538 aa13.48□□□□□ -0.25
PDLIM1-204ENST00000492511 BAZ1BQ9UIG0 1483 aaKnown RBP13.44□□□□□ -0.26
PDLIM1-204ENST00000492511 RSF1Q96T23 1441 aaPredicted RBP13.42□□□□□ -0.26
PDLIM1-204ENST00000492511 DNAJC5Q9H3Z4 198 aa13.4□□□□□ -0.26
PDLIM1-204ENST00000492511 WIZO95785 1651 aa13.38□□□□□ -0.27
PDLIM1-204ENST00000492511 NESP48681 1621 aa13.29□□□□□ -0.28
PDLIM1-204ENST00000492511 CUX2O14529 1486 aa13.26□□□□□ -0.29
PDLIM1-204ENST00000492511 TOP2AP11388 1531 aaKnown RBP13.23□□□□□ -0.29
PDLIM1-204ENST00000492511 ERCC6Q03468 1493 aa13.22□□□□□ -0.29
PDLIM1-204ENST00000492511 CADPSQ9ULU8 1353 aa13.2□□□□□ -0.3
PDLIM1-204ENST00000492511 LAMC3Q9Y6N6 1575 aa13.19□□□□□ -0.3
PDLIM1-204ENST00000492511 PDS5BQ9NTI5 1447 aa13.13□□□□□ -0.31
PDLIM1-204ENST00000492511 CCDC88BA6NC98 1476 aa13.13□□□□□ -0.31
PDLIM1-204ENST00000492511 CFTRP13569 1480 aa13.11□□□□□ -0.31
PDLIM1-204ENST00000492511 THOC2Q8NI27 1593 aaKnown RBP13.05□□□□□ -0.32
PDLIM1-204ENST00000492511 KIF21AQ7Z4S6 1674 aa13.05□□□□□ -0.32
PDLIM1-204ENST00000492511 SUPT5HO00267 1087 aaKnown RBP13.04□□□□□ -0.32
PDLIM1-204ENST00000492511 FANCD2Q9BXW9 1451 aa13.03□□□□□ -0.32
PDLIM1-204ENST00000492511 MRC2Q9UBG0 1479 aa12.99□□□□□ -0.33
PDLIM1-204ENST00000492511 CEP164Q9UPV0 1460 aa12.99□□□□□ -0.33
PDLIM1-204ENST00000492511 WDR62O43379 1518 aa12.95□□□□□ -0.34
PDLIM1-204ENST00000492511 URB2Q14146 1524 aaKnown RBP12.93□□□□□ -0.34
PDLIM1-204ENST00000492511 PRDM2Q13029 1718 aa12.86□□□□□ -0.35
PDLIM1-204ENST00000492511 TOPBP1Q92547 1522 aa12.82□□□□□ -0.36
PDLIM1-204ENST00000492511 ABCC8Q09428 1581 aa12.78□□□□□ -0.36
PDLIM1-204ENST00000492511 DNMBPQ6XZF7 1577 aa12.77□□□□□ -0.37
PDLIM1-204ENST00000492511 TRIM41Q8WV44 630 aa12.75□□□□□ -0.37
PDLIM1-204ENST00000492511 IFT140Q96RY7 1462 aa12.73□□□□□ -0.37
PDLIM1-204ENST00000492511 CUX1P39880 1505 aa12.72□□□□□ -0.37
PDLIM1-204ENST00000492511 ZNF608Q9ULD9 1512 aaPredicted RBP12.72□□□□□ -0.37
PDLIM1-204ENST00000492511 POLA1P09884 1462 aaPredicted RBP12.72□□□□□ -0.37
PDLIM1-204ENST00000492511 RAD54L2Q9Y4B4 1467 aa12.69□□□□□ -0.38
PDLIM1-204ENST00000492511 TARBP1Q13395 1621 aaKnown RBP12.68□□□□□ -0.38
PDLIM1-204ENST00000492511 SOGA1O94964 1423 aa12.67□□□□□ -0.38
PDLIM1-204ENST00000492511 FGD5Q6ZNL6 1462 aa12.66□□□□□ -0.38
PDLIM1-204ENST00000492511 AQRO60306 1485 aaKnown RBP eCLIP12.65□□□□□ -0.38
PDLIM1-204ENST00000492511 TDRD9Q8NDG6 1382 aaKnown RBP12.62□□□□□ -0.39
PDLIM1-204ENST00000492511 WRNQ14191 1432 aaPredicted RBP eCLIP12.61□□□□□ -0.39
PDLIM1-204ENST00000492511 EIF4G3O43432 1585 aaKnown RBP12.6□□□□□ -0.39
PDLIM1-204ENST00000492511 OSCARQ8IYS5 282 aa12.59□□□□□ -0.39
PDLIM1-204ENST00000492511 SYNJ1O43426 1573 aa12.58□□□□□ -0.4
PDLIM1-204ENST00000492511 TOP2BQ02880 1626 aa12.56□□□□□ -0.4
PDLIM1-204ENST00000492511 ABCA10Q8WWZ4 1543 aa12.55□□□□□ -0.4
PDLIM1-204ENST00000492511 BIVM-ERCC5R4GMW8 1640 aa12.55□□□□□ -0.4
PDLIM1-204ENST00000492511 WDR97A6NE52 1622 aa12.51□□□□□ -0.41
PDLIM1-204ENST00000492511 GAPVD1Q14C86 1478 aa12.51□□□□□ -0.41
PDLIM1-204ENST00000492511 GRIN2BQ13224 1484 aa12.5□□□□□ -0.41
PDLIM1-204ENST00000492511 SNAPC4Q5SXM2 1469 aa12.5□□□□□ -0.41
PDLIM1-204ENST00000492511 FBLN2P98095 1184 aa12.48□□□□□ -0.41
PDLIM1-204ENST00000492511 ABCA5Q8WWZ7 1642 aa12.47□□□□□ -0.41
PDLIM1-204ENST00000492511 MAGI1Q96QZ7 1491 aaPredicted RBP12.46□□□□□ -0.42
PDLIM1-204ENST00000492511 RIMBP3CA6NJZ7 1639 aa12.45□□□□□ -0.42
PDLIM1-204ENST00000492511 RIMBP3BA6NNM3 1639 aa12.45□□□□□ -0.42
PDLIM1-204ENST00000492511 RIMBP3Q9UFD9 1639 aa12.45□□□□□ -0.42
PDLIM1-204ENST00000492511 CHMP7Q8WUX9 453 aaPredicted RBP12.44□□□□□ -0.42
PDLIM1-204ENST00000492511 SYNJ2O15056 1496 aa12.42□□□□□ -0.42
PDLIM1-204ENST00000492511 CHD1O14646 1710 aa12.42□□□□□ -0.42
PDLIM1-204ENST00000492511 PBRM1Q86U86 1689 aa12.4□□□□□ -0.42
PDLIM1-204ENST00000492511 ARHGEF11O15085 1522 aa12.37□□□□□ -0.43
PDLIM1-204ENST00000492511 ERICH3Q5RHP9 1530 aa12.37□□□□□ -0.43
PDLIM1-204ENST00000492511 IGF1RP08069 1367 aa12.37□□□□□ -0.43
PDLIM1-204ENST00000492511 FHAD1B1AJZ9 1412 aa12.37□□□□□ -0.43
PDLIM1-204ENST00000492511 CLASP1Q7Z460 1538 aa12.35□□□□□ -0.43
PDLIM1-204ENST00000492511 ADAMTS12P58397 1594 aa12.35□□□□□ -0.43
PDLIM1-204ENST00000492511 GRIN2AQ12879 1464 aa12.34□□□□□ -0.43
PDLIM1-204ENST00000492511 KIF27Q86VH2 1401 aa12.34□□□□□ -0.43
PDLIM1-204ENST00000492511 NUP160Q12769 1436 aa12.31□□□□□ -0.44
PDLIM1-204ENST00000492511 RUSC2Q8N2Y8 1516 aa12.29□□□□□ -0.44
PDLIM1-204ENST00000492511 CEP170Q5SW79 1584 aa12.29□□□□□ -0.44
PDLIM1-204ENST00000492511 CYB5RLQ6IPT4 315 aa12.27□□□□□ -0.45
PDLIM1-204ENST00000492511 TRHP20396 242 aaPredicted RBP12.26□□□□□ -0.45
PDLIM1-204ENST00000492511 CARMIL1Q5VZK9 1371 aa12.26□□□□□ -0.45
PDLIM1-204ENST00000492511 ARAP1Q96P48 1450 aa12.26□□□□□ -0.45
PDLIM1-204ENST00000492511 JPH4Q96JJ6 628 aa12.22□□□□□ -0.45
PDLIM1-204ENST00000492511 ERCC6L2Q5T890 1561 aa12.21□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms