RNA–Protein interactions for RNA: ENST00000491433.1

CLCNKA-206, Transcript of chloride voltage-gated channel Ka, humanhuman

TSL 3

Gene CLCNKA, Length 824 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-206ENST00000491433 NISCHQ9Y2I1 1504 aa28.36■■■□□ 2.13
CLCNKA-206ENST00000491433 ABCC9O60706 1549 aa26.75■■□□□ 1.87
CLCNKA-206ENST00000491433 DNAJC5BQ9UF47 199 aa26.3■■□□□ 1.8
CLCNKA-206ENST00000491433 CCDC180Q9P1Z9 1646 aa25.7■■□□□ 1.71
CLCNKA-206ENST00000491433 DNAJC5Q9H3Z4 198 aa25.26■■□□□ 1.63
CLCNKA-206ENST00000491433 RB1CC1Q8TDY2 1594 aa24.86■■□□□ 1.57
CLCNKA-206ENST00000491433 PABPN1Q86U42 306 aaKnown RBP eCLIP24.69■■□□□ 1.54
CLCNKA-206ENST00000491433 NACADO15069 1562 aa24.38■■□□□ 1.49
CLCNKA-206ENST00000491433 CECR2Q9BXF3 1484 aa24.27■■□□□ 1.48
CLCNKA-206ENST00000491433 UNC13AQ9UPW8 1703 aa24.11■■□□□ 1.45
CLCNKA-206ENST00000491433 BICRAQ9NZM4 1560 aa24.1■■□□□ 1.45
CLCNKA-206ENST00000491433 DCAF8L2P0C7V8 631 aa24.07■■□□□ 1.44
CLCNKA-206ENST00000491433 CC2D2AQ9P2K1 1620 aa24.06■■□□□ 1.44
CLCNKA-206ENST00000491433 MYO15BQ96JP2 1530 aa23.94■■□□□ 1.42
CLCNKA-206ENST00000491433 SHROOM4Q9ULL8 1493 aa23.77■■□□□ 1.4
CLCNKA-206ENST00000491433 CUX2O14529 1486 aa23.68■■□□□ 1.38
CLCNKA-206ENST00000491433 EIF4G1Q04637 1599 aaKnown RBP23.68■■□□□ 1.38
CLCNKA-206ENST00000491433 TRIM41Q8WV44 630 aa23.58■■□□□ 1.37
CLCNKA-206ENST00000491433 DCAF1Q9Y4B6 1507 aa23.47■■□□□ 1.35
CLCNKA-206ENST00000491433 ZCCHC6Q5VYS8 1495 aaKnown RBP23.42■■□□□ 1.34
CLCNKA-206ENST00000491433 SCRIBQ14160 1630 aa23.28■■□□□ 1.32
CLCNKA-206ENST00000491433 ERCC6Q03468 1493 aa23.26■■□□□ 1.31
CLCNKA-206ENST00000491433 AEBP2Q6ZN18 517 aaPredicted RBP22.63■■□□□ 1.21
CLCNKA-206ENST00000491433 THOC2Q8NI27 1593 aaKnown RBP22.58■■□□□ 1.2
CLCNKA-206ENST00000491433 NESP48681 1621 aa22.53■■□□□ 1.2
CLCNKA-206ENST00000491433 NCAPD3P42695 1498 aa22.5■■□□□ 1.19
CLCNKA-206ENST00000491433 OSCARQ8IYS5 282 aa22.39■■□□□ 1.17
CLCNKA-206ENST00000491433 SMARCA2P51531 1590 aa22.37■■□□□ 1.17
CLCNKA-206ENST00000491433 ATAD2BQ9ULI0 1458 aa22.32■■□□□ 1.16
CLCNKA-206ENST00000491433 BAZ1AQ9NRL2 1556 aaPredicted RBP22.3■■□□□ 1.16
CLCNKA-206ENST00000491433 HMGXB3Q12766 1538 aa22.3■■□□□ 1.16
CLCNKA-206ENST00000491433 SMARCA4P51532 1647 aa22.21■■□□□ 1.15
CLCNKA-206ENST00000491433 LAMC3Q9Y6N6 1575 aa22.2■■□□□ 1.14
CLCNKA-206ENST00000491433 TRHP20396 242 aaPredicted RBP22.19■■□□□ 1.14
CLCNKA-206ENST00000491433 PDS5BQ9NTI5 1447 aa22.18■■□□□ 1.14
CLCNKA-206ENST00000491433 RIMBP3CA6NJZ7 1639 aa22.15■■□□□ 1.14
CLCNKA-206ENST00000491433 RIMBP3BA6NNM3 1639 aa22.15■■□□□ 1.14
CLCNKA-206ENST00000491433 RIMBP3Q9UFD9 1639 aa22.15■■□□□ 1.14
CLCNKA-206ENST00000491433 KIF21AQ7Z4S6 1674 aa22.14■■□□□ 1.14
CLCNKA-206ENST00000491433 BAZ1BQ9UIG0 1483 aaKnown RBP22.11■■□□□ 1.13
CLCNKA-206ENST00000491433 MRC2Q9UBG0 1479 aa22.04■■□□□ 1.12
CLCNKA-206ENST00000491433 PEG3Q9GZU2 1588 aa22.03■■□□□ 1.12
CLCNKA-206ENST00000491433 WDR62O43379 1518 aa22■■□□□ 1.11
CLCNKA-206ENST00000491433 ARHGEF11O15085 1522 aa21.98■■□□□ 1.11
CLCNKA-206ENST00000491433 CYB5RLQ6IPT4 315 aa21.94■■□□□ 1.1
CLCNKA-206ENST00000491433 ILDR1Q86SU0 546 aaPredicted RBP21.84■■□□□ 1.09
CLCNKA-206ENST00000491433 MROH2BQ7Z745 1585 aa21.79■■□□□ 1.08
CLCNKA-206ENST00000491433 CADPSQ9ULU8 1353 aa21.77■■□□□ 1.08
CLCNKA-206ENST00000491433 CEP164Q9UPV0 1460 aa21.68■■□□□ 1.06
CLCNKA-206ENST00000491433 ARAP1Q96P48 1450 aa21.65■■□□□ 1.06
CLCNKA-206ENST00000491433 WIZO95785 1651 aa21.53■■□□□ 1.04
CLCNKA-206ENST00000491433 FANCD2Q9BXW9 1451 aa21.52■■□□□ 1.03
CLCNKA-206ENST00000491433 RSF1Q96T23 1441 aaPredicted RBP21.45■■□□□ 1.02
CLCNKA-206ENST00000491433 CFTRP13569 1480 aa21.44■■□□□ 1.02
CLCNKA-206ENST00000491433 URB2Q14146 1524 aaKnown RBP21.38■■□□□ 1.01
CLCNKA-206ENST00000491433 ZNF608Q9ULD9 1512 aaPredicted RBP21.34■■□□□ 1.01
CLCNKA-206ENST00000491433 IFT140Q96RY7 1462 aa21.3■■□□□ 1
CLCNKA-206ENST00000491433 TOP2AP11388 1531 aaKnown RBP21.28■■□□□ 1
CLCNKA-206ENST00000491433 PRDM2Q13029 1718 aa21.26■□□□□ 0.99
CLCNKA-206ENST00000491433 FBLN2P98095 1184 aa21.21■□□□□ 0.99
CLCNKA-206ENST00000491433 CHD1O14646 1710 aa21.2■□□□□ 0.98
CLCNKA-206ENST00000491433 EIF4G3O43432 1585 aaKnown RBP21.14■□□□□ 0.98
CLCNKA-206ENST00000491433 ABCC8Q09428 1581 aa21.09■□□□□ 0.97
CLCNKA-206ENST00000491433 TOPBP1Q92547 1522 aa21.05■□□□□ 0.96
CLCNKA-206ENST00000491433 KDM4FA0A1W2PPD8 638 aa21.02■□□□□ 0.96
CLCNKA-206ENST00000491433 CCDC88BA6NC98 1476 aa21■□□□□ 0.95
CLCNKA-206ENST00000491433 AQRO60306 1485 aaKnown RBP eCLIP21■□□□□ 0.95
CLCNKA-206ENST00000491433 CLASP1Q7Z460 1538 aa20.99■□□□□ 0.95
CLCNKA-206ENST00000491433 DNMBPQ6XZF7 1577 aa20.97■□□□□ 0.95
CLCNKA-206ENST00000491433 GAPVD1Q14C86 1478 aa20.94■□□□□ 0.94
CLCNKA-206ENST00000491433 SYNJ1O43426 1573 aa20.89■□□□□ 0.94
CLCNKA-206ENST00000491433 TARBP1Q13395 1621 aaKnown RBP20.89■□□□□ 0.93
CLCNKA-206ENST00000491433 FBXO41Q8TF61 875 aa20.84■□□□□ 0.93
CLCNKA-206ENST00000491433 CHMP7Q8WUX9 453 aaPredicted RBP20.83■□□□□ 0.93
CLCNKA-206ENST00000491433 ERCC6L2Q5T890 1561 aa20.83■□□□□ 0.92
CLCNKA-206ENST00000491433 POLA1P09884 1462 aaPredicted RBP20.8■□□□□ 0.92
CLCNKA-206ENST00000491433 WDR97A6NE52 1622 aa20.78■□□□□ 0.92
CLCNKA-206ENST00000491433 SNAPC4Q5SXM2 1469 aa20.75■□□□□ 0.91
CLCNKA-206ENST00000491433 LMTK3Q96Q04 1460 aa20.74■□□□□ 0.91
CLCNKA-206ENST00000491433 SOGA1O94964 1423 aa20.72■□□□□ 0.91
CLCNKA-206ENST00000491433 KIF13AQ9H1H9 1805 aa20.7■□□□□ 0.9
CLCNKA-206ENST00000491433 RAD54L2Q9Y4B4 1467 aa20.69■□□□□ 0.9
CLCNKA-206ENST00000491433 HECW2Q9P2P5 1572 aa20.68■□□□□ 0.9
CLCNKA-206ENST00000491433 TDRD9Q8NDG6 1382 aaKnown RBP20.68■□□□□ 0.9
CLCNKA-206ENST00000491433 MAGI1Q96QZ7 1491 aaPredicted RBP20.67■□□□□ 0.9
CLCNKA-206ENST00000491433 SYNJ2O15056 1496 aa20.62■□□□□ 0.89
CLCNKA-206ENST00000491433 GRIN2BQ13224 1484 aa20.62■□□□□ 0.89
CLCNKA-206ENST00000491433 FGD5Q6ZNL6 1462 aa20.62■□□□□ 0.89
CLCNKA-206ENST00000491433 KDM6BO15054 1643 aa20.6■□□□□ 0.89
CLCNKA-206ENST00000491433 SOCS7O14512 581 aa20.6■□□□□ 0.89
CLCNKA-206ENST00000491433 FAM69CQ0P6D2 419 aa20.6■□□□□ 0.89
CLCNKA-206ENST00000491433 ADGRL1O94910 1474 aa20.54■□□□□ 0.88
CLCNKA-206ENST00000491433 ABCC10Q5T3U5 1492 aa20.53■□□□□ 0.88
CLCNKA-206ENST00000491433 CUX1P39880 1505 aa20.51■□□□□ 0.87
CLCNKA-206ENST00000491433 PBRM1Q86U86 1689 aa20.5■□□□□ 0.87
CLCNKA-206ENST00000491433 ILDR2Q71H61 639 aa20.4■□□□□ 0.86
CLCNKA-206ENST00000491433 ABCA10Q8WWZ4 1543 aa20.39■□□□□ 0.85
CLCNKA-206ENST00000491433 CEP170Q5SW79 1584 aa20.38■□□□□ 0.85
CLCNKA-206ENST00000491433 DIP2BQ9P265 1576 aa20.38■□□□□ 0.85
CLCNKA-206ENST00000491433 NPM1P06748 294 aaKnown RBP eCLIP20.38■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 79 ms