RNA–Protein interactions for RNA: ENST00000491402.5

VCPKMT-204, Transcript of valosin containing protein lysine methyltransferase, humanhuman

TSL 1 (best)

Gene VCPKMT, Length 1,793 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCPKMT-204ENST00000491402 NISCHQ9Y2I1 1504 aa51■■■■■ 5.75
VCPKMT-204ENST00000491402 CCDC180Q9P1Z9 1646 aa44.91■■■■■ 4.78
VCPKMT-204ENST00000491402 ABCC9O60706 1549 aa43.6■■■■■ 4.57
VCPKMT-204ENST00000491402 ZCCHC6Q5VYS8 1495 aaKnown RBP42.71■■■■■ 4.43
VCPKMT-204ENST00000491402 DCAF8L2P0C7V8 631 aa42.49■■■■■ 4.39
VCPKMT-204ENST00000491402 DCAF1Q9Y4B6 1507 aa42.22■■■■■ 4.35
VCPKMT-204ENST00000491402 NACADO15069 1562 aa42.12■■■■■ 4.33
VCPKMT-204ENST00000491402 RB1CC1Q8TDY2 1594 aa42.06■■■■■ 4.32
VCPKMT-204ENST00000491402 MYO15BQ96JP2 1530 aa42.02■■■■■ 4.32
VCPKMT-204ENST00000491402 UNC13AQ9UPW8 1703 aa41.14■■■■■ 4.18
VCPKMT-204ENST00000491402 SCRIBQ14160 1630 aa41.12■■■■■ 4.17
VCPKMT-204ENST00000491402 SHROOM4Q9ULL8 1493 aa40.95■■■■■ 4.15
VCPKMT-204ENST00000491402 PABPN1Q86U42 306 aaKnown RBP eCLIP40.9■■■■■ 4.14
VCPKMT-204ENST00000491402 BICRAQ9NZM4 1560 aa40.8■■■■■ 4.12
VCPKMT-204ENST00000491402 EIF4G1Q04637 1599 aaKnown RBP39.68■■■■□ 3.94
VCPKMT-204ENST00000491402 CECR2Q9BXF3 1484 aa39.65■■■■□ 3.94
VCPKMT-204ENST00000491402 DNAJC5BQ9UF47 199 aa39.63■■■■□ 3.93
VCPKMT-204ENST00000491402 BAZ1AQ9NRL2 1556 aaPredicted RBP39.47■■■■□ 3.91
VCPKMT-204ENST00000491402 CC2D2AQ9P2K1 1620 aa39.41■■■■□ 3.9
VCPKMT-204ENST00000491402 SMARCA4P51532 1647 aa39.39■■■■□ 3.9
VCPKMT-204ENST00000491402 MROH2BQ7Z745 1585 aa39.35■■■■□ 3.89
VCPKMT-204ENST00000491402 RSF1Q96T23 1441 aaPredicted RBP39.24■■■■□ 3.87
VCPKMT-204ENST00000491402 ATAD2BQ9ULI0 1458 aa39.02■■■■□ 3.84
VCPKMT-204ENST00000491402 SUPT5HO00267 1087 aaKnown RBP39■■■■□ 3.83
VCPKMT-204ENST00000491402 WIZO95785 1651 aa39■■■■□ 3.83
VCPKMT-204ENST00000491402 PEG3Q9GZU2 1588 aa38.97■■■■□ 3.83
VCPKMT-204ENST00000491402 SMARCA2P51531 1590 aa38.95■■■■□ 3.83
VCPKMT-204ENST00000491402 NCAPD3P42695 1498 aa38.9■■■■□ 3.82
VCPKMT-204ENST00000491402 BAZ1BQ9UIG0 1483 aaKnown RBP38.73■■■■□ 3.79
VCPKMT-204ENST00000491402 HMGXB3Q12766 1538 aa38.71■■■■□ 3.79
VCPKMT-204ENST00000491402 TOP2AP11388 1531 aaKnown RBP38.6■■■■□ 3.77
VCPKMT-204ENST00000491402 CCDC88BA6NC98 1476 aa38.15■■■■□ 3.7
VCPKMT-204ENST00000491402 NESP48681 1621 aa37.89■■■■□ 3.66
VCPKMT-204ENST00000491402 CADPSQ9ULU8 1353 aa37.83■■■■□ 3.65
VCPKMT-204ENST00000491402 LAMC3Q9Y6N6 1575 aa37.76■■■■□ 3.64
VCPKMT-204ENST00000491402 CFTRP13569 1480 aa37.68■■■■□ 3.62
VCPKMT-204ENST00000491402 PDS5BQ9NTI5 1447 aa37.53■■■■□ 3.6
VCPKMT-204ENST00000491402 ERCC6Q03468 1493 aa37.5■■■■□ 3.59
VCPKMT-204ENST00000491402 PRDM2Q13029 1718 aa37.49■■■■□ 3.59
VCPKMT-204ENST00000491402 KIF21AQ7Z4S6 1674 aa37.39■■■■□ 3.58
VCPKMT-204ENST00000491402 FANCD2Q9BXW9 1451 aa37.39■■■■□ 3.58
VCPKMT-204ENST00000491402 CEP164Q9UPV0 1460 aa37.27■■■■□ 3.56
VCPKMT-204ENST00000491402 ABCC8Q09428 1581 aa37.1■■■■□ 3.53
VCPKMT-204ENST00000491402 MRC2Q9UBG0 1479 aa37.1■■■■□ 3.53
VCPKMT-204ENST00000491402 THOC2Q8NI27 1593 aaKnown RBP37.1■■■■□ 3.53
VCPKMT-204ENST00000491402 URB2Q14146 1524 aaKnown RBP36.98■■■■□ 3.51
VCPKMT-204ENST00000491402 WRNQ14191 1432 aaPredicted RBP eCLIP36.97■■■■□ 3.51
VCPKMT-204ENST00000491402 CHIC1Q5VXU3 224 aa36.96■■■■□ 3.51
VCPKMT-204ENST00000491402 WDR62O43379 1518 aa36.93■■■■□ 3.5
VCPKMT-204ENST00000491402 SYNJ1O43426 1573 aa36.86■■■■□ 3.49
VCPKMT-204ENST00000491402 CUX1P39880 1505 aa36.86■■■■□ 3.49
VCPKMT-204ENST00000491402 CUX2O14529 1486 aa36.84■■■■□ 3.49
VCPKMT-204ENST00000491402 TOPBP1Q92547 1522 aa36.84■■■■□ 3.49
VCPKMT-204ENST00000491402 DNMBPQ6XZF7 1577 aa36.81■■■■□ 3.48
VCPKMT-204ENST00000491402 TOP2BQ02880 1626 aa36.8■■■■□ 3.48
VCPKMT-204ENST00000491402 BIVM-ERCC5R4GMW8 1640 aa36.79■■■■□ 3.48
VCPKMT-204ENST00000491402 TRIM41Q8WV44 630 aa36.76■■■■□ 3.48
VCPKMT-204ENST00000491402 POLA1P09884 1462 aaPredicted RBP36.57■■■■□ 3.44
VCPKMT-204ENST00000491402 FGD5Q6ZNL6 1462 aa36.57■■■■□ 3.44
VCPKMT-204ENST00000491402 SOGA1O94964 1423 aa36.46■■■■□ 3.43
VCPKMT-204ENST00000491402 IFT140Q96RY7 1462 aa36.46■■■■□ 3.43
VCPKMT-204ENST00000491402 RAD54L2Q9Y4B4 1467 aa36.45■■■■□ 3.43
VCPKMT-204ENST00000491402 TARBP1Q13395 1621 aaKnown RBP36.38■■■■□ 3.41
VCPKMT-204ENST00000491402 ZNF608Q9ULD9 1512 aaPredicted RBP36.31■■■■□ 3.4
VCPKMT-204ENST00000491402 WDR97A6NE52 1622 aa36.25■■■■□ 3.39
VCPKMT-204ENST00000491402 ABCA10Q8WWZ4 1543 aa36.25■■■■□ 3.39
VCPKMT-204ENST00000491402 TDRD9Q8NDG6 1382 aaKnown RBP36.23■■■■□ 3.39
VCPKMT-204ENST00000491402 AQRO60306 1485 aaKnown RBP eCLIP36.21■■■■□ 3.391e-6■■■■□ 26.1
VCPKMT-204ENST00000491402 EIF4G3O43432 1585 aaKnown RBP36.13■■■■□ 3.37
VCPKMT-204ENST00000491402 RUSC2Q8N2Y8 1516 aa36.12■■■■□ 3.37
VCPKMT-204ENST00000491402 KIF27Q86VH2 1401 aa36.1■■■■□ 3.37
VCPKMT-204ENST00000491402 EEA1Q15075 1411 aa36.05■■■■□ 3.36
VCPKMT-204ENST00000491402 ABCA5Q8WWZ7 1642 aa36.05■■■■□ 3.36
VCPKMT-204ENST00000491402 GAPVD1Q14C86 1478 aa36.03■■■■□ 3.36
VCPKMT-204ENST00000491402 FAM9AQ8IZU1 332 aaPredicted RBP36.02■■■■□ 3.36
VCPKMT-204ENST00000491402 GRIN2BQ13224 1484 aa35.93■■■■□ 3.34
VCPKMT-204ENST00000491402 PBRM1Q86U86 1689 aa35.87■■■■□ 3.33
VCPKMT-204ENST00000491402 CSRNP3Q8WYN3 585 aa35.86■■■■□ 3.33
VCPKMT-204ENST00000491402 ERICH3Q5RHP9 1530 aa35.83■■■■□ 3.33
VCPKMT-204ENST00000491402 IGF1RP08069 1367 aa35.83■■■■□ 3.33
VCPKMT-204ENST00000491402 SNAPC4Q5SXM2 1469 aa35.82■■■■□ 3.32
VCPKMT-204ENST00000491402 MAGI1Q96QZ7 1491 aaPredicted RBP35.75■■■■□ 3.31
VCPKMT-204ENST00000491402 FBLN2P98095 1184 aa35.74■■■■□ 3.31
VCPKMT-204ENST00000491402 CUL7Q14999 1698 aa35.72■■■■□ 3.31
VCPKMT-204ENST00000491402 PRXQ9BXM0 1461 aa35.67■■■■□ 3.3
VCPKMT-204ENST00000491402 CHMP7Q8WUX9 453 aaPredicted RBP35.66■■■■□ 3.3
VCPKMT-204ENST00000491402 KIF21BO75037 1637 aa35.65■■■■□ 3.3
VCPKMT-204ENST00000491402 CARMIL1Q5VZK9 1371 aa35.64■■■■□ 3.3
VCPKMT-204ENST00000491402 SYNJ2O15056 1496 aa35.63■■■■□ 3.29
VCPKMT-204ENST00000491402 ADAMTS12P58397 1594 aa35.62■■■■□ 3.29
VCPKMT-204ENST00000491402 FHAD1B1AJZ9 1412 aa35.61■■■■□ 3.29
VCPKMT-204ENST00000491402 CHD1O14646 1710 aa35.59■■■■□ 3.29
VCPKMT-204ENST00000491402 RAPGEF2Q9Y4G8 1499 aa35.55■■■■□ 3.28
VCPKMT-204ENST00000491402 OSCARQ8IYS5 282 aa35.54■■■■□ 3.28
VCPKMT-204ENST00000491402 EHMT2Q96KQ7 1210 aa35.51■■■■□ 3.27
VCPKMT-204ENST00000491402 GOLGA3Q08378 1498 aa35.5■■■■□ 3.27
VCPKMT-204ENST00000491402 LOC105371045A0A1W2PR82 267 aa35.48■■■■□ 3.27
VCPKMT-204ENST00000491402 GRIN2AQ12879 1464 aa35.47■■■■□ 3.27
VCPKMT-204ENST00000491402 UBTFP17480 764 aaKnown RBP35.31■■■■□ 3.24
VCPKMT-204ENST00000491402 CEP170Q5SW79 1584 aa35.27■■■■□ 3.24
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms