RNA–Protein interactions for RNA: ENST00000489656.5

VPS26A-205, Transcript of VPS26, retromer complex component A, humanhuman

TSL 5

Gene VPS26A, Length 817 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS26A-205ENST00000489656 NISCHQ9Y2I1 1504 aa32.96■■■□□ 2.87
VPS26A-205ENST00000489656 AEBP2Q6ZN18 517 aaPredicted RBP29.57■■■□□ 2.32
VPS26A-205ENST00000489656 CCDC180Q9P1Z9 1646 aa29.06■■■□□ 2.24
VPS26A-205ENST00000489656 CHIC1Q5VXU3 224 aa28.27■■■□□ 2.12
VPS26A-205ENST00000489656 ZCCHC6Q5VYS8 1495 aaKnown RBP27.65■■■□□ 2.02
VPS26A-205ENST00000489656 ABCC9O60706 1549 aa27.42■■□□□ 1.98
VPS26A-205ENST00000489656 DCAF1Q9Y4B6 1507 aa27.37■■□□□ 1.97
VPS26A-205ENST00000489656 MYO15BQ96JP2 1530 aa27.17■■□□□ 1.94
VPS26A-205ENST00000489656 NACADO15069 1562 aa27.04■■□□□ 1.92
VPS26A-205ENST00000489656 DCAF8L2P0C7V8 631 aa26.97■■□□□ 1.91
VPS26A-205ENST00000489656 RB1CC1Q8TDY2 1594 aa26.85■■□□□ 1.89
VPS26A-205ENST00000489656 SCRIBQ14160 1630 aa26.47■■□□□ 1.83
VPS26A-205ENST00000489656 UNC13AQ9UPW8 1703 aa26.42■■□□□ 1.82
VPS26A-205ENST00000489656 SHROOM4Q9ULL8 1493 aa26.4■■□□□ 1.82
VPS26A-205ENST00000489656 BICRAQ9NZM4 1560 aa26.03■■□□□ 1.76
VPS26A-205ENST00000489656 PABPN1Q86U42 306 aaKnown RBP eCLIP25.69■■□□□ 1.7
VPS26A-205ENST00000489656 CECR2Q9BXF3 1484 aa25.53■■□□□ 1.68
VPS26A-205ENST00000489656 BAZ1AQ9NRL2 1556 aaPredicted RBP25.5■■□□□ 1.67
VPS26A-205ENST00000489656 SMARCA4P51532 1647 aa25.45■■□□□ 1.66
VPS26A-205ENST00000489656 MROH2BQ7Z745 1585 aa25.39■■□□□ 1.66
VPS26A-205ENST00000489656 RSF1Q96T23 1441 aaPredicted RBP25.38■■□□□ 1.65
VPS26A-205ENST00000489656 EIF4G1Q04637 1599 aaKnown RBP25.25■■□□□ 1.63
VPS26A-205ENST00000489656 SUPT5HO00267 1087 aaKnown RBP25.24■■□□□ 1.63
VPS26A-205ENST00000489656 WIZO95785 1651 aa25.22■■□□□ 1.63
VPS26A-205ENST00000489656 PEG3Q9GZU2 1588 aa25.21■■□□□ 1.63
VPS26A-205ENST00000489656 SMARCA2P51531 1590 aa25.08■■□□□ 1.61
VPS26A-205ENST00000489656 SENP3Q9H4L4 574 aaPredicted RBP25.05■■□□□ 1.6
VPS26A-205ENST00000489656 ATAD2BQ9ULI0 1458 aa25.02■■□□□ 1.6
VPS26A-205ENST00000489656 TOP2AP11388 1531 aaKnown RBP24.99■■□□□ 1.59
VPS26A-205ENST00000489656 CC2D2AQ9P2K1 1620 aa24.94■■□□□ 1.58
VPS26A-205ENST00000489656 HMGXB3Q12766 1538 aa24.91■■□□□ 1.58
VPS26A-205ENST00000489656 PHF23Q9BUL5 403 aaPredicted RBP24.89■■□□□ 1.58
VPS26A-205ENST00000489656 NCAPD3P42695 1498 aa24.89■■□□□ 1.57
VPS26A-205ENST00000489656 BAZ1BQ9UIG0 1483 aaKnown RBP24.86■■□□□ 1.57
VPS26A-205ENST00000489656 CCDC88BA6NC98 1476 aa24.64■■□□□ 1.53
VPS26A-205ENST00000489656 PRDM2Q13029 1718 aa24.36■■□□□ 1.49
VPS26A-205ENST00000489656 DNAJC5BQ9UF47 199 aa24.35■■□□□ 1.49
VPS26A-205ENST00000489656 CFTRP13569 1480 aa24.24■■□□□ 1.47
VPS26A-205ENST00000489656 CADPSQ9ULU8 1353 aa24.16■■□□□ 1.46
VPS26A-205ENST00000489656 LAMC3Q9Y6N6 1575 aa24.16■■□□□ 1.46
VPS26A-205ENST00000489656 ABCC8Q09428 1581 aa24.01■■□□□ 1.43
VPS26A-205ENST00000489656 NESP48681 1621 aa24■■□□□ 1.43
VPS26A-205ENST00000489656 FANCD2Q9BXW9 1451 aa23.9■■□□□ 1.42
VPS26A-205ENST00000489656 WRNQ14191 1432 aaPredicted RBP eCLIP23.9■■□□□ 1.42
VPS26A-205ENST00000489656 BIVM-ERCC5R4GMW8 1640 aa23.89■■□□□ 1.42
VPS26A-205ENST00000489656 KIF21AQ7Z4S6 1674 aa23.89■■□□□ 1.41
VPS26A-205ENST00000489656 SYNJ1O43426 1573 aa23.87■■□□□ 1.41
VPS26A-205ENST00000489656 PDS5BQ9NTI5 1447 aa23.87■■□□□ 1.41
VPS26A-205ENST00000489656 TOP2BQ02880 1626 aa23.85■■□□□ 1.41
VPS26A-205ENST00000489656 TRIM41Q8WV44 630 aa23.84■■□□□ 1.41
VPS26A-205ENST00000489656 CEP164Q9UPV0 1460 aa23.81■■□□□ 1.4
VPS26A-205ENST00000489656 CUX1P39880 1505 aa23.79■■□□□ 1.4
VPS26A-205ENST00000489656 DNMBPQ6XZF7 1577 aa23.74■■□□□ 1.39
VPS26A-205ENST00000489656 URB2Q14146 1524 aaKnown RBP23.64■■□□□ 1.38
VPS26A-205ENST00000489656 TOPBP1Q92547 1522 aa23.64■■□□□ 1.38
VPS26A-205ENST00000489656 MRC2Q9UBG0 1479 aa23.61■■□□□ 1.37
VPS26A-205ENST00000489656 THOC2Q8NI27 1593 aaKnown RBP23.57■■□□□ 1.36
VPS26A-205ENST00000489656 ERCC6Q03468 1493 aa23.56■■□□□ 1.36
VPS26A-205ENST00000489656 FGD5Q6ZNL6 1462 aa23.56■■□□□ 1.36
VPS26A-205ENST00000489656 WDR62O43379 1518 aa23.54■■□□□ 1.36
VPS26A-205ENST00000489656 POLA1P09884 1462 aaPredicted RBP23.49■■□□□ 1.35
VPS26A-205ENST00000489656 EEA1Q15075 1411 aa23.49■■□□□ 1.35
VPS26A-205ENST00000489656 WDR97A6NE52 1622 aa23.48■■□□□ 1.35
VPS26A-205ENST00000489656 SOGA1O94964 1423 aa23.44■■□□□ 1.34
VPS26A-205ENST00000489656 FOXD1Q16676 465 aa23.41■■□□□ 1.34
VPS26A-205ENST00000489656 ABCA10Q8WWZ4 1543 aa23.39■■□□□ 1.34
VPS26A-205ENST00000489656 TARBP1Q13395 1621 aaKnown RBP23.39■■□□□ 1.33
VPS26A-205ENST00000489656 RUSC2Q8N2Y8 1516 aa23.38■■□□□ 1.33
VPS26A-205ENST00000489656 RAD54L2Q9Y4B4 1467 aa23.34■■□□□ 1.33
VPS26A-205ENST00000489656 KIF27Q86VH2 1401 aa23.33■■□□□ 1.33
VPS26A-205ENST00000489656 CUX2O14529 1486 aa23.33■■□□□ 1.33
VPS26A-205ENST00000489656 ABCA5Q8WWZ7 1642 aa23.29■■□□□ 1.32
VPS26A-205ENST00000489656 IFT140Q96RY7 1462 aa23.28■■□□□ 1.32
VPS26A-205ENST00000489656 FAM9AQ8IZU1 332 aaPredicted RBP23.27■■□□□ 1.32
VPS26A-205ENST00000489656 KIF21BO75037 1637 aa23.25■■□□□ 1.31
VPS26A-205ENST00000489656 CSRNP3Q8WYN3 585 aa23.24■■□□□ 1.31
VPS26A-205ENST00000489656 PBRM1Q86U86 1689 aa23.19■■□□□ 1.3
VPS26A-205ENST00000489656 CUL7Q14999 1698 aa23.16■■□□□ 1.3
VPS26A-205ENST00000489656 ERICH3Q5RHP9 1530 aa23.15■■□□□ 1.3
VPS26A-205ENST00000489656 GAPVD1Q14C86 1478 aa23.14■■□□□ 1.29
VPS26A-205ENST00000489656 PRXQ9BXM0 1461 aa23.14■■□□□ 1.29
VPS26A-205ENST00000489656 IGF1RP08069 1367 aa23.12■■□□□ 1.29
VPS26A-205ENST00000489656 EIF4G3O43432 1585 aaKnown RBP23.11■■□□□ 1.29
VPS26A-205ENST00000489656 GOLGA3Q08378 1498 aa23.1■■□□□ 1.29
VPS26A-205ENST00000489656 TDRD9Q8NDG6 1382 aaKnown RBP23.09■■□□□ 1.29
VPS26A-205ENST00000489656 LOC105371045A0A1W2PR82 267 aa23.08■■□□□ 1.29
VPS26A-205ENST00000489656 ZNF608Q9ULD9 1512 aaPredicted RBP23.08■■□□□ 1.28
VPS26A-205ENST00000489656 PLPPR3Q6T4P5 718 aa23.04■■□□□ 1.28
VPS26A-205ENST00000489656 AQRO60306 1485 aaKnown RBP eCLIP23.03■■□□□ 1.28
VPS26A-205ENST00000489656 GRIN2BQ13224 1484 aa23.02■■□□□ 1.28
VPS26A-205ENST00000489656 RAPGEF2Q9Y4G8 1499 aa23.02■■□□□ 1.28
VPS26A-205ENST00000489656 CARMIL1Q5VZK9 1371 aa23■■□□□ 1.27
VPS26A-205ENST00000489656 ADAMTS12P58397 1594 aa22.97■■□□□ 1.27
VPS26A-205ENST00000489656 TNIKQ9UKE5 1360 aa22.95■■□□□ 1.26
VPS26A-205ENST00000489656 MAGI1Q96QZ7 1491 aaPredicted RBP22.91■■□□□ 1.26
VPS26A-205ENST00000489656 CTTNBP2Q8WZ74 1663 aa22.9■■□□□ 1.26
VPS26A-205ENST00000489656 FHAD1B1AJZ9 1412 aa22.9■■□□□ 1.26
VPS26A-205ENST00000489656 SNAPC4Q5SXM2 1469 aa22.87■■□□□ 1.25
VPS26A-205ENST00000489656 EHMT2Q96KQ7 1210 aa22.85■■□□□ 1.25
VPS26A-205ENST00000489656 UBTFP17480 764 aaKnown RBP22.84■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 97.8 ms