RNA–Protein interactions for RNA: ENST00000489611.5

COL9A1-208, Transcript of collagen type IX alpha 1 chain, humanhuman

TSL 2

Gene COL9A1, Length 1,940 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1-208ENST00000489611 NISCHQ9Y2I1 1504 aa32.33■■■□□ 2.77
COL9A1-208ENST00000489611 CCDC180Q9P1Z9 1646 aa28.15■■■□□ 2.1
COL9A1-208ENST00000489611 ZCCHC6Q5VYS8 1495 aaKnown RBP27.13■■□□□ 1.93
COL9A1-208ENST00000489611 ABCC9O60706 1549 aa26.92■■□□□ 1.9
COL9A1-208ENST00000489611 DCAF8L2P0C7V8 631 aa26.91■■□□□ 1.9
COL9A1-208ENST00000489611 DCAF1Q9Y4B6 1507 aa26.66■■□□□ 1.86
COL9A1-208ENST00000489611 SHROOM4Q9ULL8 1493 aa26.54■■□□□ 1.84
COL9A1-208ENST00000489611 MYO15BQ96JP2 1530 aa26.38■■□□□ 1.81
COL9A1-208ENST00000489611 NACADO15069 1562 aa26.29■■□□□ 1.8
COL9A1-208ENST00000489611 RB1CC1Q8TDY2 1594 aa26.11■■□□□ 1.77
COL9A1-208ENST00000489611 SCRIBQ14160 1630 aa25.99■■□□□ 1.75
COL9A1-208ENST00000489611 SUPT5HO00267 1087 aaKnown RBP25.92■■□□□ 1.74
COL9A1-208ENST00000489611 UNC13AQ9UPW8 1703 aa25.56■■□□□ 1.68
COL9A1-208ENST00000489611 PABPN1Q86U42 306 aaKnown RBP eCLIP25.42■■□□□ 1.66
COL9A1-208ENST00000489611 BICRAQ9NZM4 1560 aa25.37■■□□□ 1.65
COL9A1-208ENST00000489611 CHIC1Q5VXU3 224 aa25.23■■□□□ 1.63
COL9A1-208ENST00000489611 CECR2Q9BXF3 1484 aa25.21■■□□□ 1.63
COL9A1-208ENST00000489611 RSF1Q96T23 1441 aaPredicted RBP25.14■■□□□ 1.62
COL9A1-208ENST00000489611 MROH2BQ7Z745 1585 aa25.01■■□□□ 1.59
COL9A1-208ENST00000489611 BAZ1AQ9NRL2 1556 aaPredicted RBP24.95■■□□□ 1.58
COL9A1-208ENST00000489611 SMARCA4P51532 1647 aa24.86■■□□□ 1.57
COL9A1-208ENST00000489611 WIZO95785 1651 aa24.78■■□□□ 1.56
COL9A1-208ENST00000489611 EIF4G1Q04637 1599 aaKnown RBP24.61■■□□□ 1.53
COL9A1-208ENST00000489611 ATAD2BQ9ULI0 1458 aa24.53■■□□□ 1.52
COL9A1-208ENST00000489611 PEG3Q9GZU2 1588 aa24.52■■□□□ 1.52
COL9A1-208ENST00000489611 TOP2AP11388 1531 aaKnown RBP24.48■■□□□ 1.51
COL9A1-208ENST00000489611 SMARCA2P51531 1590 aa24.44■■□□□ 1.5
COL9A1-208ENST00000489611 TRIM41Q8WV44 630 aa24.41■■□□□ 1.5
COL9A1-208ENST00000489611 BAZ1BQ9UIG0 1483 aaKnown RBP24.37■■□□□ 1.49
COL9A1-208ENST00000489611 NCAPD3P42695 1498 aa24.32■■□□□ 1.48
COL9A1-208ENST00000489611 CCDC88BA6NC98 1476 aa24.29■■□□□ 1.48
COL9A1-208ENST00000489611 CC2D2AQ9P2K1 1620 aa24.29■■□□□ 1.48
COL9A1-208ENST00000489611 HMGXB3Q12766 1538 aa24.23■■□□□ 1.47
COL9A1-208ENST00000489611 LOC105371045A0A1W2PR82 267 aa24.21■■□□□ 1.47
COL9A1-208ENST00000489611 DNAJC5BQ9UF47 199 aa23.93■■□□□ 1.42
COL9A1-208ENST00000489611 PCGF6Q9BYE7 350 aa23.9■■□□□ 1.42
COL9A1-208ENST00000489611 FAM9AQ8IZU1 332 aaPredicted RBP23.86■■□□□ 1.41
COL9A1-208ENST00000489611 HRCP23327 699 aa23.85■■□□□ 1.41
COL9A1-208ENST00000489611 ABCC8Q09428 1581 aa23.83■■□□□ 1.41
COL9A1-208ENST00000489611 TRIM26Q12899 539 aaPredicted RBP23.83■■□□□ 1.41
COL9A1-208ENST00000489611 EEA1Q15075 1411 aa23.82■■□□□ 1.4
COL9A1-208ENST00000489611 CFTRP13569 1480 aa23.75■■□□□ 1.39
COL9A1-208ENST00000489611 CADPSQ9ULU8 1353 aa23.71■■□□□ 1.39
COL9A1-208ENST00000489611 WRNQ14191 1432 aaPredicted RBP eCLIP23.68■■□□□ 1.38
COL9A1-208ENST00000489611 NESP48681 1621 aa23.59■■□□□ 1.37
COL9A1-208ENST00000489611 SOGA1O94964 1423 aa23.54■■□□□ 1.36
COL9A1-208ENST00000489611 CSRNP3Q8WYN3 585 aa23.51■■□□□ 1.35
COL9A1-208ENST00000489611 SYNJ1O43426 1573 aa23.51■■□□□ 1.35
COL9A1-208ENST00000489611 TNIKQ9UKE5 1360 aa23.5■■□□□ 1.35
COL9A1-208ENST00000489611 PRDM2Q13029 1718 aa23.48■■□□□ 1.35
COL9A1-208ENST00000489611 LAMC3Q9Y6N6 1575 aa23.47■■□□□ 1.35
COL9A1-208ENST00000489611 FANCD2Q9BXW9 1451 aa23.45■■□□□ 1.34
COL9A1-208ENST00000489611 GOLGA3Q08378 1498 aa23.45■■□□□ 1.34
COL9A1-208ENST00000489611 TOP2BQ02880 1626 aa23.44■■□□□ 1.34
COL9A1-208ENST00000489611 EHMT2Q96KQ7 1210 aa23.42■■□□□ 1.34
COL9A1-208ENST00000489611 KIF21BO75037 1637 aa23.41■■□□□ 1.34
COL9A1-208ENST00000489611 BIVM-ERCC5R4GMW8 1640 aa23.41■■□□□ 1.34
COL9A1-208ENST00000489611 CEP162Q5TB80 1403 aa23.39■■□□□ 1.34
COL9A1-208ENST00000489611 CEP164Q9UPV0 1460 aa23.39■■□□□ 1.33
COL9A1-208ENST00000489611 CUX1P39880 1505 aa23.39■■□□□ 1.33
COL9A1-208ENST00000489611 RUSC2Q8N2Y8 1516 aa23.37■■□□□ 1.33
COL9A1-208ENST00000489611 ZEB1P37275 1124 aaPredicted RBP23.35■■□□□ 1.33
COL9A1-208ENST00000489611 PDS5BQ9NTI5 1447 aa23.34■■□□□ 1.33
COL9A1-208ENST00000489611 UBTFP17480 764 aaKnown RBP23.25■■□□□ 1.31
COL9A1-208ENST00000489611 KIF21AQ7Z4S6 1674 aa23.21■■□□□ 1.31
COL9A1-208ENST00000489611 TOPBP1Q92547 1522 aa23.17■■□□□ 1.3
COL9A1-208ENST00000489611 URB2Q14146 1524 aaKnown RBP23.17■■□□□ 1.3
COL9A1-208ENST00000489611 DNMBPQ6XZF7 1577 aa23.16■■□□□ 1.3
COL9A1-208ENST00000489611 FGD5Q6ZNL6 1462 aa23.15■■□□□ 1.3
COL9A1-208ENST00000489611 ERICH3Q5RHP9 1530 aa23.15■■□□□ 1.3
COL9A1-208ENST00000489611 POLA1P09884 1462 aaPredicted RBP23.06■■□□□ 1.28
COL9A1-208ENST00000489611 CLIP1P30622 1438 aa23.06■■□□□ 1.28
COL9A1-208ENST00000489611 ERCC6Q03468 1493 aa23.06■■□□□ 1.28
COL9A1-208ENST00000489611 RAPGEF2Q9Y4G8 1499 aa23.05■■□□□ 1.28
COL9A1-208ENST00000489611 KIF27Q86VH2 1401 aa23.05■■□□□ 1.28
COL9A1-208ENST00000489611 PRXQ9BXM0 1461 aa23.04■■□□□ 1.28
COL9A1-208ENST00000489611 MRC2Q9UBG0 1479 aa23.04■■□□□ 1.28
COL9A1-208ENST00000489611 RAD54L2Q9Y4B4 1467 aa23.03■■□□□ 1.28
COL9A1-208ENST00000489611 PPARGC1BQ86YN6 1023 aaKnown RBP23.02■■□□□ 1.28
COL9A1-208ENST00000489611 CUX2O14529 1486 aa22.99■■□□□ 1.27
COL9A1-208ENST00000489611 VPS8Q8N3P4 1428 aa22.98■■□□□ 1.27
COL9A1-208ENST00000489611 ABCA10Q8WWZ4 1543 aa22.91■■□□□ 1.26
COL9A1-208ENST00000489611 WDR62O43379 1518 aa22.9■■□□□ 1.26
COL9A1-208ENST00000489611 THOC2Q8NI27 1593 aaKnown RBP22.87■■□□□ 1.25
COL9A1-208ENST00000489611 IGF1RP08069 1367 aa22.85■■□□□ 1.25
COL9A1-208ENST00000489611 TDRD9Q8NDG6 1382 aaKnown RBP22.83■■□□□ 1.25
COL9A1-208ENST00000489611 APLP2Q06481 763 aa22.82■■□□□ 1.24
COL9A1-208ENST00000489611 TARBP1Q13395 1621 aaKnown RBP22.8■■□□□ 1.24
COL9A1-208ENST00000489611 WDR97A6NE52 1622 aa22.8■■□□□ 1.24
COL9A1-208ENST00000489611 CCER1Q8TC90 406 aaPredicted RBP22.74■■□□□ 1.23
COL9A1-208ENST00000489611 IFT140Q96RY7 1462 aa22.74■■□□□ 1.23
COL9A1-208ENST00000489611 GAPVD1Q14C86 1478 aa22.72■■□□□ 1.23
COL9A1-208ENST00000489611 CARMIL1Q5VZK9 1371 aa22.72■■□□□ 1.23
COL9A1-208ENST00000489611 ABCA5Q8WWZ7 1642 aa22.72■■□□□ 1.23
COL9A1-208ENST00000489611 ARAP1Q96P48 1450 aa22.71■■□□□ 1.23
COL9A1-208ENST00000489611 AQRO60306 1485 aaKnown RBP eCLIP22.7■■□□□ 1.22
COL9A1-208ENST00000489611 ZNF608Q9ULD9 1512 aaPredicted RBP22.69■■□□□ 1.22
COL9A1-208ENST00000489611 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.65■■□□□ 1.22
COL9A1-208ENST00000489611 TTBK1Q5TCY1 1321 aaPredicted RBP22.63■■□□□ 1.21
COL9A1-208ENST00000489611 ARHGAP35Q9NRY4 1499 aa22.59■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 61.1 ms