RNA–Protein interactions for RNA: ENST00000489156.1

SYNE1-227, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 1,891 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-227ENST00000489156 NISCHQ9Y2I1 1504 aa37.03■■■■□ 3.52
SYNE1-227ENST00000489156 CCDC180Q9P1Z9 1646 aa32.65■■■□□ 2.82
SYNE1-227ENST00000489156 ABCC9O60706 1549 aa31.52■■■□□ 2.64
SYNE1-227ENST00000489156 ZCCHC6Q5VYS8 1495 aaKnown RBP30.95■■■□□ 2.54
SYNE1-227ENST00000489156 DCAF8L2P0C7V8 631 aa30.85■■■□□ 2.53
SYNE1-227ENST00000489156 DCAF1Q9Y4B6 1507 aa30.6■■■□□ 2.49
SYNE1-227ENST00000489156 NACADO15069 1562 aa30.57■■■□□ 2.48
SYNE1-227ENST00000489156 MYO15BQ96JP2 1530 aa30.52■■■□□ 2.48
SYNE1-227ENST00000489156 RB1CC1Q8TDY2 1594 aa30.49■■■□□ 2.47
SYNE1-227ENST00000489156 SCRIBQ14160 1630 aa29.92■■■□□ 2.38
SYNE1-227ENST00000489156 UNC13AQ9UPW8 1703 aa29.91■■■□□ 2.38
SYNE1-227ENST00000489156 SHROOM4Q9ULL8 1493 aa29.7■■■□□ 2.35
SYNE1-227ENST00000489156 PABPN1Q86U42 306 aaKnown RBP eCLIP29.59■■■□□ 2.33
SYNE1-227ENST00000489156 BICRAQ9NZM4 1560 aa29.58■■■□□ 2.33
SYNE1-227ENST00000489156 CECR2Q9BXF3 1484 aa28.84■■■□□ 2.21
SYNE1-227ENST00000489156 EIF4G1Q04637 1599 aaKnown RBP28.75■■■□□ 2.19
SYNE1-227ENST00000489156 BAZ1AQ9NRL2 1556 aaPredicted RBP28.65■■■□□ 2.18
SYNE1-227ENST00000489156 SMARCA4P51532 1647 aa28.64■■■□□ 2.17
SYNE1-227ENST00000489156 MROH2BQ7Z745 1585 aa28.59■■■□□ 2.17
SYNE1-227ENST00000489156 CC2D2AQ9P2K1 1620 aa28.52■■■□□ 2.16
SYNE1-227ENST00000489156 DNAJC5BQ9UF47 199 aa28.48■■■□□ 2.15
SYNE1-227ENST00000489156 RSF1Q96T23 1441 aaPredicted RBP28.44■■■□□ 2.14
SYNE1-227ENST00000489156 WIZO95785 1651 aa28.34■■■□□ 2.13
SYNE1-227ENST00000489156 ATAD2BQ9ULI0 1458 aa28.33■■■□□ 2.13
SYNE1-227ENST00000489156 SMARCA2P51531 1590 aa28.3■■■□□ 2.12
SYNE1-227ENST00000489156 PEG3Q9GZU2 1588 aa28.3■■■□□ 2.12
SYNE1-227ENST00000489156 SUPT5HO00267 1087 aaKnown RBP28.22■■■□□ 2.11
SYNE1-227ENST00000489156 NCAPD3P42695 1498 aa28.21■■■□□ 2.11
SYNE1-227ENST00000489156 BAZ1BQ9UIG0 1483 aaKnown RBP28.13■■■□□ 2.09
SYNE1-227ENST00000489156 HMGXB3Q12766 1538 aa28.11■■■□□ 2.09
SYNE1-227ENST00000489156 TOP2AP11388 1531 aaKnown RBP27.99■■■□□ 2.07
SYNE1-227ENST00000489156 CCDC88BA6NC98 1476 aa27.7■■■□□ 2.03
SYNE1-227ENST00000489156 NESP48681 1621 aa27.45■■□□□ 1.98
SYNE1-227ENST00000489156 CADPSQ9ULU8 1353 aa27.44■■□□□ 1.98
SYNE1-227ENST00000489156 LAMC3Q9Y6N6 1575 aa27.39■■□□□ 1.97
SYNE1-227ENST00000489156 CFTRP13569 1480 aa27.38■■□□□ 1.97
SYNE1-227ENST00000489156 PRDM2Q13029 1718 aa27.25■■□□□ 1.95
SYNE1-227ENST00000489156 PDS5BQ9NTI5 1447 aa27.18■■□□□ 1.94
SYNE1-227ENST00000489156 KIF21AQ7Z4S6 1674 aa27.14■■□□□ 1.94
SYNE1-227ENST00000489156 FANCD2Q9BXW9 1451 aa27.14■■□□□ 1.93
SYNE1-227ENST00000489156 ERCC6Q03468 1493 aa27.1■■□□□ 1.93
SYNE1-227ENST00000489156 CEP164Q9UPV0 1460 aa27.04■■□□□ 1.92
SYNE1-227ENST00000489156 CHIC1Q5VXU3 224 aa26.94■■□□□ 1.9
SYNE1-227ENST00000489156 ABCC8Q09428 1581 aa26.9■■□□□ 1.9
SYNE1-227ENST00000489156 MRC2Q9UBG0 1479 aa26.87■■□□□ 1.89
SYNE1-227ENST00000489156 THOC2Q8NI27 1593 aaKnown RBP26.86■■□□□ 1.89
SYNE1-227ENST00000489156 URB2Q14146 1524 aaKnown RBP26.84■■□□□ 1.89
SYNE1-227ENST00000489156 WRNQ14191 1432 aaPredicted RBP eCLIP26.79■■□□□ 1.88
SYNE1-227ENST00000489156 CUX1P39880 1505 aa26.78■■□□□ 1.88
SYNE1-227ENST00000489156 TOPBP1Q92547 1522 aa26.77■■□□□ 1.88
SYNE1-227ENST00000489156 DNMBPQ6XZF7 1577 aa26.76■■□□□ 1.88
SYNE1-227ENST00000489156 WDR62O43379 1518 aa26.76■■□□□ 1.87
SYNE1-227ENST00000489156 SYNJ1O43426 1573 aa26.73■■□□□ 1.87
SYNE1-227ENST00000489156 TOP2BQ02880 1626 aa26.67■■□□□ 1.86
SYNE1-227ENST00000489156 BIVM-ERCC5R4GMW8 1640 aa26.67■■□□□ 1.86
SYNE1-227ENST00000489156 FGD5Q6ZNL6 1462 aa26.6■■□□□ 1.85
SYNE1-227ENST00000489156 TRIM41Q8WV44 630 aa26.58■■□□□ 1.85
SYNE1-227ENST00000489156 POLA1P09884 1462 aaPredicted RBP26.58■■□□□ 1.85
SYNE1-227ENST00000489156 CUX2O14529 1486 aa26.56■■□□□ 1.84
SYNE1-227ENST00000489156 RAD54L2Q9Y4B4 1467 aa26.49■■□□□ 1.83
SYNE1-227ENST00000489156 SOGA1O94964 1423 aa26.48■■□□□ 1.83
SYNE1-227ENST00000489156 TARBP1Q13395 1621 aaKnown RBP26.44■■□□□ 1.82
SYNE1-227ENST00000489156 IFT140Q96RY7 1462 aa26.43■■□□□ 1.82
SYNE1-227ENST00000489156 WDR97A6NE52 1622 aa26.34■■□□□ 1.81
SYNE1-227ENST00000489156 ABCA10Q8WWZ4 1543 aa26.33■■□□□ 1.81
SYNE1-227ENST00000489156 ZNF608Q9ULD9 1512 aaPredicted RBP26.33■■□□□ 1.81
SYNE1-227ENST00000489156 TDRD9Q8NDG6 1382 aaKnown RBP26.3■■□□□ 1.8
SYNE1-227ENST00000489156 AQRO60306 1485 aaKnown RBP eCLIP26.26■■□□□ 1.79
SYNE1-227ENST00000489156 EIF4G3O43432 1585 aaKnown RBP26.22■■□□□ 1.79
SYNE1-227ENST00000489156 ABCA5Q8WWZ7 1642 aa26.19■■□□□ 1.78
SYNE1-227ENST00000489156 RUSC2Q8N2Y8 1516 aa26.19■■□□□ 1.78
SYNE1-227ENST00000489156 GAPVD1Q14C86 1478 aa26.18■■□□□ 1.78
SYNE1-227ENST00000489156 KIF27Q86VH2 1401 aa26.18■■□□□ 1.78
SYNE1-227ENST00000489156 PBRM1Q86U86 1689 aa26.11■■□□□ 1.77
SYNE1-227ENST00000489156 FAM9AQ8IZU1 332 aaPredicted RBP26.08■■□□□ 1.77
SYNE1-227ENST00000489156 GRIN2BQ13224 1484 aa26.08■■□□□ 1.77
SYNE1-227ENST00000489156 IGF1RP08069 1367 aa26.03■■□□□ 1.76
SYNE1-227ENST00000489156 ERICH3Q5RHP9 1530 aa26.03■■□□□ 1.76
SYNE1-227ENST00000489156 SNAPC4Q5SXM2 1469 aa26■■□□□ 1.75
SYNE1-227ENST00000489156 EEA1Q15075 1411 aa26■■□□□ 1.75
SYNE1-227ENST00000489156 CSRNP3Q8WYN3 585 aa25.96■■□□□ 1.75
SYNE1-227ENST00000489156 MAGI1Q96QZ7 1491 aaPredicted RBP25.94■■□□□ 1.74
SYNE1-227ENST00000489156 CUL7Q14999 1698 aa25.9■■□□□ 1.74
SYNE1-227ENST00000489156 ADAMTS12P58397 1594 aa25.9■■□□□ 1.74
SYNE1-227ENST00000489156 CARMIL1Q5VZK9 1371 aa25.89■■□□□ 1.74
SYNE1-227ENST00000489156 FHAD1B1AJZ9 1412 aa25.88■■□□□ 1.73
SYNE1-227ENST00000489156 FBLN2P98095 1184 aa25.87■■□□□ 1.73
SYNE1-227ENST00000489156 SYNJ2O15056 1496 aa25.85■■□□□ 1.73
SYNE1-227ENST00000489156 LOC105371045A0A1W2PR82 267 aa25.85■■□□□ 1.73
SYNE1-227ENST00000489156 CHMP7Q8WUX9 453 aaPredicted RBP25.84■■□□□ 1.73
SYNE1-227ENST00000489156 CHD1O14646 1710 aa25.83■■□□□ 1.73
SYNE1-227ENST00000489156 PRXQ9BXM0 1461 aa25.81■■□□□ 1.72
SYNE1-227ENST00000489156 RAPGEF2Q9Y4G8 1499 aa25.78■■□□□ 1.72
SYNE1-227ENST00000489156 EHMT2Q96KQ7 1210 aa25.76■■□□□ 1.71
SYNE1-227ENST00000489156 GRIN2AQ12879 1464 aa25.76■■□□□ 1.71
SYNE1-227ENST00000489156 KIF21BO75037 1637 aa25.73■■□□□ 1.71
SYNE1-227ENST00000489156 CEP170Q5SW79 1584 aa25.63■■□□□ 1.69
SYNE1-227ENST00000489156 OSCARQ8IYS5 282 aa25.63■■□□□ 1.69
SYNE1-227ENST00000489156 GOLGA3Q08378 1498 aa25.62■■□□□ 1.69
SYNE1-227ENST00000489156 NUP160Q12769 1436 aa25.6■■□□□ 1.69
Retrieved 100 of 20,778 RNA–protein pairs in 62.8 ms