RNA–Protein interactions for RNA: ENST00000488918.2

ARHGEF39-204, Transcript of Rho guanine nucleotide exchange factor 39, humanhuman

TSL 5

Gene ARHGEF39, Length 347 nt, Biotype processed transcript, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ARHGEF39-204ENST00000488918 NISCHQ9Y2I1 1504 aa26.91■■□□□ 1.9
ARHGEF39-204ENST00000488918 CCDC180Q9P1Z9 1646 aa23.94■■□□□ 1.42
ARHGEF39-204ENST00000488918 ABCC9O60706 1549 aa23.64■■□□□ 1.38
ARHGEF39-204ENST00000488918 DCAF8L2P0C7V8 631 aa22.85■■□□□ 1.25
ARHGEF39-204ENST00000488918 RB1CC1Q8TDY2 1594 aa22.69■■□□□ 1.22
ARHGEF39-204ENST00000488918 NACADO15069 1562 aa22.6■■□□□ 1.21
ARHGEF39-204ENST00000488918 MYO15BQ96JP2 1530 aa22.36■■□□□ 1.17
ARHGEF39-204ENST00000488918 ZCCHC6Q5VYS8 1495 aaKnown RBP22.36■■□□□ 1.17
ARHGEF39-204ENST00000488918 DCAF1Q9Y4B6 1507 aa22.23■■□□□ 1.15
ARHGEF39-204ENST00000488918 PABPN1Q86U42 306 aaKnown RBP eCLIP22.13■■□□□ 1.13
ARHGEF39-204ENST00000488918 UNC13AQ9UPW8 1703 aa21.95■■□□□ 1.1
ARHGEF39-204ENST00000488918 SCRIBQ14160 1630 aa21.91■■□□□ 1.1
ARHGEF39-204ENST00000488918 BICRAQ9NZM4 1560 aa21.82■■□□□ 1.08
ARHGEF39-204ENST00000488918 SHROOM4Q9ULL8 1493 aa21.73■■□□□ 1.07
ARHGEF39-204ENST00000488918 DNAJC5BQ9UF47 199 aa21.7■■□□□ 1.06
ARHGEF39-204ENST00000488918 EIF4G1Q04637 1599 aaKnown RBP21.36■■□□□ 1.01
ARHGEF39-204ENST00000488918 CC2D2AQ9P2K1 1620 aa21.31■■□□□ 1
ARHGEF39-204ENST00000488918 CECR2Q9BXF3 1484 aa21.26■□□□□ 0.99
ARHGEF39-204ENST00000488918 BAZ1AQ9NRL2 1556 aaPredicted RBP20.92■□□□□ 0.94
ARHGEF39-204ENST00000488918 SMARCA4P51532 1647 aa20.89■□□□□ 0.93
ARHGEF39-204ENST00000488918 SMARCA2P51531 1590 aa20.86■□□□□ 0.93
ARHGEF39-204ENST00000488918 NCAPD3P42695 1498 aa20.84■□□□□ 0.93
ARHGEF39-204ENST00000488918 ATAD2BQ9ULI0 1458 aa20.83■□□□□ 0.93
ARHGEF39-204ENST00000488918 BAZ1BQ9UIG0 1483 aaKnown RBP20.75■□□□□ 0.91
ARHGEF39-204ENST00000488918 HMGXB3Q12766 1538 aa20.72■□□□□ 0.91
ARHGEF39-204ENST00000488918 MROH2BQ7Z745 1585 aa20.71■□□□□ 0.91
ARHGEF39-204ENST00000488918 PEG3Q9GZU2 1588 aa20.63■□□□□ 0.89
ARHGEF39-204ENST00000488918 ERCC6Q03468 1493 aa20.51■□□□□ 0.87
ARHGEF39-204ENST00000488918 WIZO95785 1651 aa20.48■□□□□ 0.87
ARHGEF39-204ENST00000488918 RSF1Q96T23 1441 aaPredicted RBP20.47■□□□□ 0.87
ARHGEF39-204ENST00000488918 NESP48681 1621 aa20.35■□□□□ 0.85
ARHGEF39-204ENST00000488918 LAMC3Q9Y6N6 1575 aa20.33■□□□□ 0.84
ARHGEF39-204ENST00000488918 PDS5BQ9NTI5 1447 aa20.3■□□□□ 0.84
ARHGEF39-204ENST00000488918 TOP2AP11388 1531 aaKnown RBP20.3■□□□□ 0.84
ARHGEF39-204ENST00000488918 CADPSQ9ULU8 1353 aa20.29■□□□□ 0.84
ARHGEF39-204ENST00000488918 CUX2O14529 1486 aa20.22■□□□□ 0.83
ARHGEF39-204ENST00000488918 SUPT5HO00267 1087 aaKnown RBP20.09■□□□□ 0.81
ARHGEF39-204ENST00000488918 CFTRP13569 1480 aa20.08■□□□□ 0.81
ARHGEF39-204ENST00000488918 KIF21AQ7Z4S6 1674 aa20.07■□□□□ 0.8
ARHGEF39-204ENST00000488918 CCDC88BA6NC98 1476 aa20.07■□□□□ 0.8
ARHGEF39-204ENST00000488918 CEP164Q9UPV0 1460 aa20.06■□□□□ 0.8
ARHGEF39-204ENST00000488918 FANCD2Q9BXW9 1451 aa20.05■□□□□ 0.8
ARHGEF39-204ENST00000488918 MRC2Q9UBG0 1479 aa20.03■□□□□ 0.8
ARHGEF39-204ENST00000488918 THOC2Q8NI27 1593 aaKnown RBP20.01■□□□□ 0.79
ARHGEF39-204ENST00000488918 WDR62O43379 1518 aa19.89■□□□□ 0.77
ARHGEF39-204ENST00000488918 PRDM2Q13029 1718 aa19.84■□□□□ 0.77
ARHGEF39-204ENST00000488918 URB2Q14146 1524 aaKnown RBP19.77■□□□□ 0.76
ARHGEF39-204ENST00000488918 ABCC8Q09428 1581 aa19.77■□□□□ 0.76
ARHGEF39-204ENST00000488918 DNAJC5Q9H3Z4 198 aa19.75■□□□□ 0.75
ARHGEF39-204ENST00000488918 TOPBP1Q92547 1522 aa19.67■□□□□ 0.74
ARHGEF39-204ENST00000488918 DNMBPQ6XZF7 1577 aa19.65■□□□□ 0.74
ARHGEF39-204ENST00000488918 IFT140Q96RY7 1462 aa19.64■□□□□ 0.73
ARHGEF39-204ENST00000488918 SOGA1O94964 1423 aa19.51■□□□□ 0.71
ARHGEF39-204ENST00000488918 POLA1P09884 1462 aaPredicted RBP19.49■□□□□ 0.71
ARHGEF39-204ENST00000488918 OSCARQ8IYS5 282 aa19.48■□□□□ 0.71
ARHGEF39-204ENST00000488918 ZNF608Q9ULD9 1512 aaPredicted RBP19.47■□□□□ 0.71
ARHGEF39-204ENST00000488918 FGD5Q6ZNL6 1462 aa19.46■□□□□ 0.71
ARHGEF39-204ENST00000488918 CUX1P39880 1505 aa19.45■□□□□ 0.7
ARHGEF39-204ENST00000488918 RAD54L2Q9Y4B4 1467 aa19.42■□□□□ 0.7
ARHGEF39-204ENST00000488918 AQRO60306 1485 aaKnown RBP eCLIP19.41■□□□□ 0.7
ARHGEF39-204ENST00000488918 FBLN2P98095 1184 aa19.41■□□□□ 0.7
ARHGEF39-204ENST00000488918 TDRD9Q8NDG6 1382 aaKnown RBP19.4■□□□□ 0.7
ARHGEF39-204ENST00000488918 EIF4G3O43432 1585 aaKnown RBP19.4■□□□□ 0.7
ARHGEF39-204ENST00000488918 WRNQ14191 1432 aaPredicted RBP eCLIP19.39■□□□□ 0.69
ARHGEF39-204ENST00000488918 TARBP1Q13395 1621 aaKnown RBP19.39■□□□□ 0.69
ARHGEF39-204ENST00000488918 WDR97A6NE52 1622 aa19.31■□□□□ 0.68
ARHGEF39-204ENST00000488918 CHMP7Q8WUX9 453 aaPredicted RBP19.3■□□□□ 0.68
ARHGEF39-204ENST00000488918 GRIN2BQ13224 1484 aa19.27■□□□□ 0.67
ARHGEF39-204ENST00000488918 TOP2BQ02880 1626 aa19.26■□□□□ 0.67
ARHGEF39-204ENST00000488918 GAPVD1Q14C86 1478 aa19.25■□□□□ 0.67
ARHGEF39-204ENST00000488918 ABCA10Q8WWZ4 1543 aa19.25■□□□□ 0.67
ARHGEF39-204ENST00000488918 SNAPC4Q5SXM2 1469 aa19.23■□□□□ 0.67
ARHGEF39-204ENST00000488918 BIVM-ERCC5R4GMW8 1640 aa19.22■□□□□ 0.67
ARHGEF39-204ENST00000488918 SYNJ1O43426 1573 aa19.22■□□□□ 0.67
ARHGEF39-204ENST00000488918 MAGI1Q96QZ7 1491 aaPredicted RBP19.22■□□□□ 0.67
ARHGEF39-204ENST00000488918 TRIM41Q8WV44 630 aa19.2■□□□□ 0.66
ARHGEF39-204ENST00000488918 SYNJ2O15056 1496 aa19.15■□□□□ 0.66
ARHGEF39-204ENST00000488918 CHD1O14646 1710 aa19.14■□□□□ 0.66
ARHGEF39-204ENST00000488918 PBRM1Q86U86 1689 aa19.11■□□□□ 0.65
ARHGEF39-204ENST00000488918 ABCA5Q8WWZ7 1642 aa19.11■□□□□ 0.65
ARHGEF39-204ENST00000488918 KIF27Q86VH2 1401 aa19.04■□□□□ 0.64
ARHGEF39-204ENST00000488918 FHAD1B1AJZ9 1412 aa19.03■□□□□ 0.64
ARHGEF39-204ENST00000488918 ERICH3Q5RHP9 1530 aa19.03■□□□□ 0.64
ARHGEF39-204ENST00000488918 ARHGEF11O15085 1522 aa19.01■□□□□ 0.63
ARHGEF39-204ENST00000488918 CYB5RLQ6IPT4 315 aa19■□□□□ 0.63
ARHGEF39-204ENST00000488918 RIMBP3CA6NJZ7 1639 aa19■□□□□ 0.63
ARHGEF39-204ENST00000488918 RIMBP3BA6NNM3 1639 aa19■□□□□ 0.63
ARHGEF39-204ENST00000488918 RIMBP3Q9UFD9 1639 aa19■□□□□ 0.63
ARHGEF39-204ENST00000488918 GRIN2AQ12879 1464 aa18.98■□□□□ 0.63
ARHGEF39-204ENST00000488918 ADAMTS12P58397 1594 aa18.97■□□□□ 0.63
ARHGEF39-204ENST00000488918 CLASP1Q7Z460 1538 aa18.92■□□□□ 0.62
ARHGEF39-204ENST00000488918 IGF1RP08069 1367 aa18.89■□□□□ 0.61
ARHGEF39-204ENST00000488918 NUP160Q12769 1436 aa18.86■□□□□ 0.61
ARHGEF39-204ENST00000488918 CARMIL1Q5VZK9 1371 aa18.84■□□□□ 0.61
ARHGEF39-204ENST00000488918 CUL7Q14999 1698 aa18.83■□□□□ 0.61
ARHGEF39-204ENST00000488918 CEP170Q5SW79 1584 aa18.83■□□□□ 0.6
ARHGEF39-204ENST00000488918 ARAP1Q96P48 1450 aa18.82■□□□□ 0.6
ARHGEF39-204ENST00000488918 JPH4Q96JJ6 628 aa18.8■□□□□ 0.6
ARHGEF39-204ENST00000488918 TRHP20396 242 aaPredicted RBP18.77■□□□□ 0.6
ARHGEF39-204ENST00000488918 PRG4Q92954 1404 aaPredicted RBP18.74■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 82.9 ms