RNA–Protein interactions for RNA: ENST00000488912.5

COL21A1-211, Transcript of collagen type XXI alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL21A1, Length 2,327 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL21A1-211ENST00000488912 NISCHQ9Y2I1 1504 aa25.14■■□□□ 1.62
COL21A1-211ENST00000488912 CCDC180Q9P1Z9 1646 aa22.02■■□□□ 1.12
COL21A1-211ENST00000488912 ZCCHC6Q5VYS8 1495 aaKnown RBP21.1■□□□□ 0.97
COL21A1-211ENST00000488912 ABCC9O60706 1549 aa20.93■□□□□ 0.94
COL21A1-211ENST00000488912 DCAF1Q9Y4B6 1507 aa20.78■□□□□ 0.92
COL21A1-211ENST00000488912 DCAF8L2P0C7V8 631 aa20.77■□□□□ 0.92
COL21A1-211ENST00000488912 MYO15BQ96JP2 1530 aa20.58■□□□□ 0.89
COL21A1-211ENST00000488912 NACADO15069 1562 aa20.51■□□□□ 0.87
COL21A1-211ENST00000488912 SHROOM4Q9ULL8 1493 aa20.41■□□□□ 0.86
COL21A1-211ENST00000488912 RB1CC1Q8TDY2 1594 aa20.38■□□□□ 0.85
COL21A1-211ENST00000488912 SCRIBQ14160 1630 aa20.24■□□□□ 0.83
COL21A1-211ENST00000488912 UNC13AQ9UPW8 1703 aa20.04■□□□□ 0.8
COL21A1-211ENST00000488912 BICRAQ9NZM4 1560 aa19.79■□□□□ 0.76
COL21A1-211ENST00000488912 PABPN1Q86U42 306 aaKnown RBP eCLIP19.69■□□□□ 0.74
COL21A1-211ENST00000488912 CECR2Q9BXF3 1484 aa19.55■□□□□ 0.72
COL21A1-211ENST00000488912 SUPT5HO00267 1087 aaKnown RBP19.54■□□□□ 0.72
COL21A1-211ENST00000488912 RSF1Q96T23 1441 aaPredicted RBP19.44■□□□□ 0.7
COL21A1-211ENST00000488912 MROH2BQ7Z745 1585 aa19.43■□□□□ 0.7
COL21A1-211ENST00000488912 BAZ1AQ9NRL2 1556 aaPredicted RBP19.43■□□□□ 0.7
COL21A1-211ENST00000488912 SMARCA4P51532 1647 aa19.38■□□□□ 0.69
COL21A1-211ENST00000488912 WIZO95785 1651 aa19.29■□□□□ 0.68
COL21A1-211ENST00000488912 EIF4G1Q04637 1599 aaKnown RBP19.2■□□□□ 0.66
COL21A1-211ENST00000488912 PEG3Q9GZU2 1588 aa19.14■□□□□ 0.65
COL21A1-211ENST00000488912 ATAD2BQ9ULI0 1458 aa19.07■□□□□ 0.64
COL21A1-211ENST00000488912 TOP2AP11388 1531 aaKnown RBP19.06■□□□□ 0.64
COL21A1-211ENST00000488912 SMARCA2P51531 1590 aa19.06■□□□□ 0.64
COL21A1-211ENST00000488912 BAZ1BQ9UIG0 1483 aaKnown RBP18.96■□□□□ 0.63
COL21A1-211ENST00000488912 CC2D2AQ9P2K1 1620 aa18.96■□□□□ 0.63
COL21A1-211ENST00000488912 NCAPD3P42695 1498 aa18.92■□□□□ 0.62
COL21A1-211ENST00000488912 HMGXB3Q12766 1538 aa18.91■□□□□ 0.62
COL21A1-211ENST00000488912 CCDC88BA6NC98 1476 aa18.85■□□□□ 0.61
COL21A1-211ENST00000488912 CHIC1Q5VXU3 224 aa18.62■□□□□ 0.57
COL21A1-211ENST00000488912 DNAJC5BQ9UF47 199 aa18.57■□□□□ 0.56
COL21A1-211ENST00000488912 CFTRP13569 1480 aa18.47■□□□□ 0.55
COL21A1-211ENST00000488912 ABCC8Q09428 1581 aa18.44■□□□□ 0.54
COL21A1-211ENST00000488912 PRDM2Q13029 1718 aa18.43■□□□□ 0.54
COL21A1-211ENST00000488912 CADPSQ9ULU8 1353 aa18.42■□□□□ 0.54
COL21A1-211ENST00000488912 TRIM41Q8WV44 630 aa18.37■□□□□ 0.53
COL21A1-211ENST00000488912 NESP48681 1621 aa18.34■□□□□ 0.53
COL21A1-211ENST00000488912 LAMC3Q9Y6N6 1575 aa18.32■□□□□ 0.52
COL21A1-211ENST00000488912 WRNQ14191 1432 aaPredicted RBP eCLIP18.3■□□□□ 0.52
COL21A1-211ENST00000488912 SYNJ1O43426 1573 aa18.27■□□□□ 0.51
COL21A1-211ENST00000488912 FANCD2Q9BXW9 1451 aa18.24■□□□□ 0.51
COL21A1-211ENST00000488912 TOP2BQ02880 1626 aa18.19■□□□□ 0.5
COL21A1-211ENST00000488912 BIVM-ERCC5R4GMW8 1640 aa18.19■□□□□ 0.5
COL21A1-211ENST00000488912 CUX1P39880 1505 aa18.18■□□□□ 0.5
COL21A1-211ENST00000488912 KIF21AQ7Z4S6 1674 aa18.16■□□□□ 0.5
COL21A1-211ENST00000488912 PDS5BQ9NTI5 1447 aa18.15■□□□□ 0.5
COL21A1-211ENST00000488912 CEP164Q9UPV0 1460 aa18.14■□□□□ 0.49
COL21A1-211ENST00000488912 DNMBPQ6XZF7 1577 aa18.06■□□□□ 0.48
COL21A1-211ENST00000488912 FAM9AQ8IZU1 332 aaPredicted RBP18.05■□□□□ 0.48
COL21A1-211ENST00000488912 SOGA1O94964 1423 aa18.04■□□□□ 0.48
COL21A1-211ENST00000488912 URB2Q14146 1524 aaKnown RBP18.03■□□□□ 0.48
COL21A1-211ENST00000488912 TOPBP1Q92547 1522 aa18.03■□□□□ 0.48
COL21A1-211ENST00000488912 FGD5Q6ZNL6 1462 aa18■□□□□ 0.47
COL21A1-211ENST00000488912 RUSC2Q8N2Y8 1516 aa17.99■□□□□ 0.47
COL21A1-211ENST00000488912 ERCC6Q03468 1493 aa17.95■□□□□ 0.46
COL21A1-211ENST00000488912 MRC2Q9UBG0 1479 aa17.95■□□□□ 0.46
COL21A1-211ENST00000488912 EEA1Q15075 1411 aa17.94■□□□□ 0.46
COL21A1-211ENST00000488912 POLA1P09884 1462 aaPredicted RBP17.93■□□□□ 0.46
COL21A1-211ENST00000488912 LOC105371045A0A1W2PR82 267 aa17.91■□□□□ 0.46
COL21A1-211ENST00000488912 THOC2Q8NI27 1593 aaKnown RBP17.88■□□□□ 0.45
COL21A1-211ENST00000488912 WDR62O43379 1518 aa17.88■□□□□ 0.45
COL21A1-211ENST00000488912 RAD54L2Q9Y4B4 1467 aa17.87■□□□□ 0.45
COL21A1-211ENST00000488912 CUX2O14529 1486 aa17.85■□□□□ 0.45
COL21A1-211ENST00000488912 CSRNP3Q8WYN3 585 aa17.84■□□□□ 0.45
COL21A1-211ENST00000488912 KIF27Q86VH2 1401 aa17.84■□□□□ 0.45
COL21A1-211ENST00000488912 WDR97A6NE52 1622 aa17.83■□□□□ 0.44
COL21A1-211ENST00000488912 ABCA10Q8WWZ4 1543 aa17.83■□□□□ 0.44
COL21A1-211ENST00000488912 EHMT2Q96KQ7 1210 aa17.81■□□□□ 0.44
COL21A1-211ENST00000488912 TARBP1Q13395 1621 aaKnown RBP17.79■□□□□ 0.44
COL21A1-211ENST00000488912 KIF21BO75037 1637 aa17.76■□□□□ 0.43
COL21A1-211ENST00000488912 ABCA5Q8WWZ7 1642 aa17.72■□□□□ 0.43
COL21A1-211ENST00000488912 GOLGA3Q08378 1498 aa17.71■□□□□ 0.43
COL21A1-211ENST00000488912 IFT140Q96RY7 1462 aa17.7■□□□□ 0.42
COL21A1-211ENST00000488912 PRXQ9BXM0 1461 aa17.7■□□□□ 0.42
COL21A1-211ENST00000488912 TDRD9Q8NDG6 1382 aaKnown RBP17.7■□□□□ 0.42
COL21A1-211ENST00000488912 IGF1RP08069 1367 aa17.69■□□□□ 0.42
COL21A1-211ENST00000488912 RAPGEF2Q9Y4G8 1499 aa17.68■□□□□ 0.42
COL21A1-211ENST00000488912 GAPVD1Q14C86 1478 aa17.66■□□□□ 0.42
COL21A1-211ENST00000488912 ERICH3Q5RHP9 1530 aa17.66■□□□□ 0.42
COL21A1-211ENST00000488912 ZNF608Q9ULD9 1512 aaPredicted RBP17.63■□□□□ 0.41
COL21A1-211ENST00000488912 PBRM1Q86U86 1689 aa17.63■□□□□ 0.41
COL21A1-211ENST00000488912 AQRO60306 1485 aaKnown RBP eCLIP17.61■□□□□ 0.41
COL21A1-211ENST00000488912 CUL7Q14999 1698 aa17.61■□□□□ 0.41
COL21A1-211ENST00000488912 UBTFP17480 764 aaKnown RBP17.61■□□□□ 0.41
COL21A1-211ENST00000488912 TNIKQ9UKE5 1360 aa17.6■□□□□ 0.41
COL21A1-211ENST00000488912 CARMIL1Q5VZK9 1371 aa17.6■□□□□ 0.41
COL21A1-211ENST00000488912 EIF4G3O43432 1585 aaKnown RBP17.6■□□□□ 0.41
COL21A1-211ENST00000488912 GRIN2BQ13224 1484 aa17.54■□□□□ 0.4
COL21A1-211ENST00000488912 CEP162Q5TB80 1403 aa17.53■□□□□ 0.4
COL21A1-211ENST00000488912 ADAMTS12P58397 1594 aa17.5■□□□□ 0.39
COL21A1-211ENST00000488912 SNAPC4Q5SXM2 1469 aa17.46■□□□□ 0.39
COL21A1-211ENST00000488912 FHAD1B1AJZ9 1412 aa17.46■□□□□ 0.39
COL21A1-211ENST00000488912 CTTNBP2Q8WZ74 1663 aa17.43■□□□□ 0.38
COL21A1-211ENST00000488912 CLIP1P30622 1438 aa17.42■□□□□ 0.38
COL21A1-211ENST00000488912 MAGI1Q96QZ7 1491 aaPredicted RBP17.42■□□□□ 0.38
COL21A1-211ENST00000488912 RANGAP1P46060 587 aaPredicted RBP17.39■□□□□ 0.38
COL21A1-211ENST00000488912 SYNJ2O15056 1496 aa17.35■□□□□ 0.37
COL21A1-211ENST00000488912 GRIN2AQ12879 1464 aa17.34■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms