RNA–Protein interactions for RNA: ENST00000488897.5

COL16A1-215, Transcript of collagen type XVI alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL16A1, Length 2,423 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL16A1-215ENST00000488897 NISCHQ9Y2I1 1504 aa41.41■■■■■ 4.22
COL16A1-215ENST00000488897 CCDC180Q9P1Z9 1646 aa36.22■■■■□ 3.39
COL16A1-215ENST00000488897 ABCC9O60706 1549 aa35.49■■■■□ 3.27
COL16A1-215ENST00000488897 DCAF8L2P0C7V8 631 aa35.01■■■■□ 3.2
COL16A1-215ENST00000488897 ZCCHC6Q5VYS8 1495 aaKnown RBP34.57■■■■□ 3.13
COL16A1-215ENST00000488897 NACADO15069 1562 aa34■■■■□ 3.03
COL16A1-215ENST00000488897 RB1CC1Q8TDY2 1594 aa33.96■■■■□ 3.03
COL16A1-215ENST00000488897 DCAF1Q9Y4B6 1507 aa33.95■■■■□ 3.03
COL16A1-215ENST00000488897 MYO15BQ96JP2 1530 aa33.79■■■■□ 3
COL16A1-215ENST00000488897 SHROOM4Q9ULL8 1493 aa33.75■■■□□ 2.99
COL16A1-215ENST00000488897 SCRIBQ14160 1630 aa33.62■■■□□ 2.97
COL16A1-215ENST00000488897 PABPN1Q86U42 306 aaKnown RBP eCLIP33.49■■■□□ 2.951e-6■■■■□ 24.8
COL16A1-215ENST00000488897 UNC13AQ9UPW8 1703 aa33.4■■■□□ 2.94
COL16A1-215ENST00000488897 BICRAQ9NZM4 1560 aa33.1■■■□□ 2.89
COL16A1-215ENST00000488897 CECR2Q9BXF3 1484 aa32.49■■■□□ 2.79
COL16A1-215ENST00000488897 DNAJC5BQ9UF47 199 aa32.24■■■□□ 2.75
COL16A1-215ENST00000488897 EIF4G1Q04637 1599 aaKnown RBP32.15■■■□□ 2.74
COL16A1-215ENST00000488897 MROH2BQ7Z745 1585 aa32.11■■■□□ 2.73
COL16A1-215ENST00000488897 SUPT5HO00267 1087 aaKnown RBP32.04■■■□□ 2.72
COL16A1-215ENST00000488897 SMARCA4P51532 1647 aa31.99■■■□□ 2.71
COL16A1-215ENST00000488897 BAZ1AQ9NRL2 1556 aaPredicted RBP31.96■■■□□ 2.71
COL16A1-215ENST00000488897 CC2D2AQ9P2K1 1620 aa31.93■■■□□ 2.7
COL16A1-215ENST00000488897 RSF1Q96T23 1441 aaPredicted RBP31.92■■■□□ 2.7
COL16A1-215ENST00000488897 WIZO95785 1651 aa31.83■■■□□ 2.69
COL16A1-215ENST00000488897 ATAD2BQ9ULI0 1458 aa31.72■■■□□ 2.67
COL16A1-215ENST00000488897 SMARCA2P51531 1590 aa31.51■■■□□ 2.64
COL16A1-215ENST00000488897 BAZ1BQ9UIG0 1483 aaKnown RBP31.49■■■□□ 2.63
COL16A1-215ENST00000488897 NCAPD3P42695 1498 aa31.47■■■□□ 2.63
COL16A1-215ENST00000488897 PEG3Q9GZU2 1588 aa31.46■■■□□ 2.63
COL16A1-215ENST00000488897 HMGXB3Q12766 1538 aa31.27■■■□□ 2.6
COL16A1-215ENST00000488897 TOP2AP11388 1531 aaKnown RBP31.25■■■□□ 2.59
COL16A1-215ENST00000488897 CCDC88BA6NC98 1476 aa31.1■■■□□ 2.57
COL16A1-215ENST00000488897 NESP48681 1621 aa30.94■■■□□ 2.54
COL16A1-215ENST00000488897 CADPSQ9ULU8 1353 aa30.71■■■□□ 2.51
COL16A1-215ENST00000488897 CFTRP13569 1480 aa30.6■■■□□ 2.49
COL16A1-215ENST00000488897 LAMC3Q9Y6N6 1575 aa30.48■■■□□ 2.47
COL16A1-215ENST00000488897 FANCD2Q9BXW9 1451 aa30.4■■■□□ 2.46
COL16A1-215ENST00000488897 ERCC6Q03468 1493 aa30.39■■■□□ 2.46
COL16A1-215ENST00000488897 KIF21AQ7Z4S6 1674 aa30.38■■■□□ 2.45
COL16A1-215ENST00000488897 CHIC1Q5VXU3 224 aa30.37■■■□□ 2.45
COL16A1-215ENST00000488897 PDS5BQ9NTI5 1447 aa30.34■■■□□ 2.45
COL16A1-215ENST00000488897 ABCC8Q09428 1581 aa30.33■■■□□ 2.45
COL16A1-215ENST00000488897 CEP164Q9UPV0 1460 aa30.23■■■□□ 2.43
COL16A1-215ENST00000488897 PRDM2Q13029 1718 aa30.21■■■□□ 2.43
COL16A1-215ENST00000488897 URB2Q14146 1524 aaKnown RBP30.11■■■□□ 2.41
COL16A1-215ENST00000488897 WRNQ14191 1432 aaPredicted RBP eCLIP30.04■■■□□ 2.4
COL16A1-215ENST00000488897 CUX1P39880 1505 aa30.03■■■□□ 2.4
COL16A1-215ENST00000488897 MRC2Q9UBG0 1479 aa30.02■■■□□ 2.4
COL16A1-215ENST00000488897 SYNJ1O43426 1573 aa30■■■□□ 2.39
COL16A1-215ENST00000488897 THOC2Q8NI27 1593 aaKnown RBP29.99■■■□□ 2.39
COL16A1-215ENST00000488897 TRIM41Q8WV44 630 aa29.97■■■□□ 2.39
COL16A1-215ENST00000488897 TOPBP1Q92547 1522 aa29.96■■■□□ 2.39
COL16A1-215ENST00000488897 DNMBPQ6XZF7 1577 aa29.85■■■□□ 2.37
COL16A1-215ENST00000488897 WDR62O43379 1518 aa29.85■■■□□ 2.37
COL16A1-215ENST00000488897 RAD54L2Q9Y4B4 1467 aa29.84■■■□□ 2.37
COL16A1-215ENST00000488897 FGD5Q6ZNL6 1462 aa29.83■■■□□ 2.37
COL16A1-215ENST00000488897 POLA1P09884 1462 aaPredicted RBP29.79■■■□□ 2.36
COL16A1-215ENST00000488897 TOP2BQ02880 1626 aa29.78■■■□□ 2.36
COL16A1-215ENST00000488897 CUX2O14529 1486 aa29.75■■■□□ 2.35
COL16A1-215ENST00000488897 BIVM-ERCC5R4GMW8 1640 aa29.71■■■□□ 2.35
COL16A1-215ENST00000488897 FAM9AQ8IZU1 332 aaPredicted RBP29.71■■■□□ 2.35
COL16A1-215ENST00000488897 SOGA1O94964 1423 aa29.71■■■□□ 2.35
COL16A1-215ENST00000488897 HRCP23327 699 aa29.66■■■□□ 2.34
COL16A1-215ENST00000488897 TDRD9Q8NDG6 1382 aaKnown RBP29.66■■■□□ 2.34
COL16A1-215ENST00000488897 ZNF608Q9ULD9 1512 aaPredicted RBP29.64■■■□□ 2.33
COL16A1-215ENST00000488897 RUSC2Q8N2Y8 1516 aa29.61■■■□□ 2.33
COL16A1-215ENST00000488897 AQRO60306 1485 aaKnown RBP eCLIP29.58■■■□□ 2.33
COL16A1-215ENST00000488897 EHMT2Q96KQ7 1210 aa29.56■■■□□ 2.32
COL16A1-215ENST00000488897 TARBP1Q13395 1621 aaKnown RBP29.54■■■□□ 2.32
COL16A1-215ENST00000488897 IFT140Q96RY7 1462 aa29.49■■■□□ 2.31
COL16A1-215ENST00000488897 PCGF6Q9BYE7 350 aa29.49■■■□□ 2.31
COL16A1-215ENST00000488897 ABCA10Q8WWZ4 1543 aa29.41■■■□□ 2.3
COL16A1-215ENST00000488897 LOC105371045A0A1W2PR82 267 aa29.37■■■□□ 2.29
COL16A1-215ENST00000488897 WDR97A6NE52 1622 aa29.36■■■□□ 2.29
COL16A1-215ENST00000488897 EIF4G3O43432 1585 aaKnown RBP29.34■■■□□ 2.29
COL16A1-215ENST00000488897 GAPVD1Q14C86 1478 aa29.32■■■□□ 2.28
COL16A1-215ENST00000488897 KIF27Q86VH2 1401 aa29.28■■■□□ 2.28
COL16A1-215ENST00000488897 FBLN2P98095 1184 aa29.28■■■□□ 2.28
COL16A1-215ENST00000488897 ABCA5Q8WWZ7 1642 aa29.24■■■□□ 2.27
COL16A1-215ENST00000488897 IGF1RP08069 1367 aa29.23■■■□□ 2.27
COL16A1-215ENST00000488897 CSRNP3Q8WYN3 585 aa29.19■■■□□ 2.26
COL16A1-215ENST00000488897 SNAPC4Q5SXM2 1469 aa29.16■■■□□ 2.26
COL16A1-215ENST00000488897 GRIN2BQ13224 1484 aa29.15■■■□□ 2.26
COL16A1-215ENST00000488897 PBRM1Q86U86 1689 aa29.14■■■□□ 2.26
COL16A1-215ENST00000488897 CHMP7Q8WUX9 453 aaPredicted RBP29.06■■■□□ 2.24
COL16A1-215ENST00000488897 CARMIL1Q5VZK9 1371 aa29.05■■■□□ 2.24
COL16A1-215ENST00000488897 TRIM26Q12899 539 aaPredicted RBP29.03■■■□□ 2.24
COL16A1-215ENST00000488897 RANGAP1P46060 587 aaPredicted RBP29■■■□□ 2.23
COL16A1-215ENST00000488897 ERICH3Q5RHP9 1530 aa28.99■■■□□ 2.23
COL16A1-215ENST00000488897 RAPGEF2Q9Y4G8 1499 aa28.96■■■□□ 2.23
COL16A1-215ENST00000488897 ADAMTS12P58397 1594 aa28.93■■■□□ 2.22
COL16A1-215ENST00000488897 EEA1Q15075 1411 aa28.92■■■□□ 2.22
COL16A1-215ENST00000488897 FHAD1B1AJZ9 1412 aa28.91■■■□□ 2.22
COL16A1-215ENST00000488897 MAGI1Q96QZ7 1491 aaPredicted RBP28.91■■■□□ 2.22
COL16A1-215ENST00000488897 CHD1O14646 1710 aa28.89■■■□□ 2.22
COL16A1-215ENST00000488897 PRXQ9BXM0 1461 aa28.89■■■□□ 2.21
COL16A1-215ENST00000488897 UBTFP17480 764 aaKnown RBP28.89■■■□□ 2.21
COL16A1-215ENST00000488897 SYNJ2O15056 1496 aa28.88■■■□□ 2.21
COL16A1-215ENST00000488897 PPARGC1BQ86YN6 1023 aaKnown RBP28.84■■■□□ 2.21
COL16A1-215ENST00000488897 GRIN2AQ12879 1464 aa28.82■■■□□ 2.2
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms