RNA–Protein interactions for RNA: ENST00000488321.1

TRIM54-204, Transcript of tripartite motif containing 54, humanhuman

TSL 2

Gene TRIM54, Length 560 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-204ENST00000488321 NISCHQ9Y2I1 1504 aa36.41■■■■□ 3.42
TRIM54-204ENST00000488321 CCDC180Q9P1Z9 1646 aa32.33■■■□□ 2.77
TRIM54-204ENST00000488321 ABCC9O60706 1549 aa31.95■■■□□ 2.71
TRIM54-204ENST00000488321 DCAF8L2P0C7V8 631 aa30.69■■■□□ 2.5
TRIM54-204ENST00000488321 RB1CC1Q8TDY2 1594 aa30.58■■■□□ 2.49
TRIM54-204ENST00000488321 NACADO15069 1562 aa30.49■■■□□ 2.47
TRIM54-204ENST00000488321 ZCCHC6Q5VYS8 1495 aaKnown RBP30.3■■■□□ 2.44
TRIM54-204ENST00000488321 MYO15BQ96JP2 1530 aa30.24■■■□□ 2.43
TRIM54-204ENST00000488321 DCAF1Q9Y4B6 1507 aa30.06■■■□□ 2.4
TRIM54-204ENST00000488321 PABPN1Q86U42 306 aaKnown RBP eCLIP29.89■■■□□ 2.38
TRIM54-204ENST00000488321 UNC13AQ9UPW8 1703 aa29.72■■■□□ 2.35
TRIM54-204ENST00000488321 BICRAQ9NZM4 1560 aa29.62■■■□□ 2.33
TRIM54-204ENST00000488321 SCRIBQ14160 1630 aa29.61■■■□□ 2.33
TRIM54-204ENST00000488321 DNAJC5BQ9UF47 199 aa29.45■■■□□ 2.31
TRIM54-204ENST00000488321 SHROOM4Q9ULL8 1493 aa29.3■■■□□ 2.28
TRIM54-204ENST00000488321 EIF4G1Q04637 1599 aaKnown RBP28.9■■■□□ 2.22
TRIM54-204ENST00000488321 CC2D2AQ9P2K1 1620 aa28.8■■■□□ 2.2
TRIM54-204ENST00000488321 CECR2Q9BXF3 1484 aa28.71■■■□□ 2.19
TRIM54-204ENST00000488321 SMARCA4P51532 1647 aa28.25■■■□□ 2.11
TRIM54-204ENST00000488321 BAZ1AQ9NRL2 1556 aaPredicted RBP28.24■■■□□ 2.11
TRIM54-204ENST00000488321 ATAD2BQ9ULI0 1458 aa28.19■■■□□ 2.1
TRIM54-204ENST00000488321 NCAPD3P42695 1498 aa28.18■■■□□ 2.1
TRIM54-204ENST00000488321 SMARCA2P51531 1590 aa28.12■■■□□ 2.09
TRIM54-204ENST00000488321 MROH2BQ7Z745 1585 aa28.08■■■□□ 2.09
TRIM54-204ENST00000488321 HMGXB3Q12766 1538 aa27.99■■■□□ 2.07
TRIM54-204ENST00000488321 BAZ1BQ9UIG0 1483 aaKnown RBP27.97■■■□□ 2.07
TRIM54-204ENST00000488321 PEG3Q9GZU2 1588 aa27.94■■■□□ 2.06
TRIM54-204ENST00000488321 RSF1Q96T23 1441 aaPredicted RBP27.74■■■□□ 2.03
TRIM54-204ENST00000488321 WIZO95785 1651 aa27.72■■■□□ 2.03
TRIM54-204ENST00000488321 NESP48681 1621 aa27.57■■■□□ 2
TRIM54-204ENST00000488321 ERCC6Q03468 1493 aa27.57■■■□□ 2
TRIM54-204ENST00000488321 TOP2AP11388 1531 aaKnown RBP27.45■■□□□ 1.98
TRIM54-204ENST00000488321 LAMC3Q9Y6N6 1575 aa27.43■■□□□ 1.98
TRIM54-204ENST00000488321 CADPSQ9ULU8 1353 aa27.39■■□□□ 1.98
TRIM54-204ENST00000488321 PDS5BQ9NTI5 1447 aa27.33■■□□□ 1.96
TRIM54-204ENST00000488321 CUX2O14529 1486 aa27.25■■□□□ 1.95
TRIM54-204ENST00000488321 CFTRP13569 1480 aa27.17■■□□□ 1.94
TRIM54-204ENST00000488321 CCDC88BA6NC98 1476 aa27.16■■□□□ 1.94
TRIM54-204ENST00000488321 KIF21AQ7Z4S6 1674 aa27.13■■□□□ 1.93
TRIM54-204ENST00000488321 THOC2Q8NI27 1593 aaKnown RBP27.1■■□□□ 1.93
TRIM54-204ENST00000488321 FANCD2Q9BXW9 1451 aa27.07■■□□□ 1.92
TRIM54-204ENST00000488321 SUPT5HO00267 1087 aaKnown RBP27.06■■□□□ 1.92
TRIM54-204ENST00000488321 CEP164Q9UPV0 1460 aa27.06■■□□□ 1.92
TRIM54-204ENST00000488321 MRC2Q9UBG0 1479 aa27.03■■□□□ 1.92
TRIM54-204ENST00000488321 WDR62O43379 1518 aa26.9■■□□□ 1.9
TRIM54-204ENST00000488321 URB2Q14146 1524 aaKnown RBP26.79■■□□□ 1.88
TRIM54-204ENST00000488321 PRDM2Q13029 1718 aa26.75■■□□□ 1.87
TRIM54-204ENST00000488321 DNAJC5Q9H3Z4 198 aa26.62■■□□□ 1.85
TRIM54-204ENST00000488321 TOPBP1Q92547 1522 aa26.6■■□□□ 1.85
TRIM54-204ENST00000488321 ABCC8Q09428 1581 aa26.58■■□□□ 1.85
TRIM54-204ENST00000488321 DNMBPQ6XZF7 1577 aa26.53■■□□□ 1.84
TRIM54-204ENST00000488321 IFT140Q96RY7 1462 aa26.49■■□□□ 1.83
TRIM54-204ENST00000488321 ZNF608Q9ULD9 1512 aaPredicted RBP26.39■■□□□ 1.81
TRIM54-204ENST00000488321 POLA1P09884 1462 aaPredicted RBP26.37■■□□□ 1.81
TRIM54-204ENST00000488321 CUX1P39880 1505 aa26.34■■□□□ 1.81
TRIM54-204ENST00000488321 SOGA1O94964 1423 aa26.31■■□□□ 1.8
TRIM54-204ENST00000488321 FGD5Q6ZNL6 1462 aa26.3■■□□□ 1.8
TRIM54-204ENST00000488321 RAD54L2Q9Y4B4 1467 aa26.3■■□□□ 1.8
TRIM54-204ENST00000488321 TARBP1Q13395 1621 aaKnown RBP26.26■■□□□ 1.79
TRIM54-204ENST00000488321 AQRO60306 1485 aaKnown RBP eCLIP26.25■■□□□ 1.79
TRIM54-204ENST00000488321 EIF4G3O43432 1585 aaKnown RBP26.22■■□□□ 1.79
TRIM54-204ENST00000488321 TDRD9Q8NDG6 1382 aaKnown RBP26.2■■□□□ 1.79
TRIM54-204ENST00000488321 WRNQ14191 1432 aaPredicted RBP eCLIP26.18■■□□□ 1.78
TRIM54-204ENST00000488321 OSCARQ8IYS5 282 aa26.18■■□□□ 1.78
TRIM54-204ENST00000488321 FBLN2P98095 1184 aa26.06■■□□□ 1.76
TRIM54-204ENST00000488321 SYNJ1O43426 1573 aa26.06■■□□□ 1.76
TRIM54-204ENST00000488321 TOP2BQ02880 1626 aa26.04■■□□□ 1.76
TRIM54-204ENST00000488321 WDR97A6NE52 1622 aa26.02■■□□□ 1.76
TRIM54-204ENST00000488321 ABCA10Q8WWZ4 1543 aa26.01■■□□□ 1.75
TRIM54-204ENST00000488321 BIVM-ERCC5R4GMW8 1640 aa26■■□□□ 1.75
TRIM54-204ENST00000488321 GRIN2BQ13224 1484 aa25.99■■□□□ 1.75
TRIM54-204ENST00000488321 SNAPC4Q5SXM2 1469 aa25.98■■□□□ 1.75
TRIM54-204ENST00000488321 GAPVD1Q14C86 1478 aa25.98■■□□□ 1.75
TRIM54-204ENST00000488321 CHMP7Q8WUX9 453 aaPredicted RBP25.92■■□□□ 1.74
TRIM54-204ENST00000488321 MAGI1Q96QZ7 1491 aaPredicted RBP25.91■■□□□ 1.74
TRIM54-204ENST00000488321 ABCA5Q8WWZ7 1642 aa25.87■■□□□ 1.73
TRIM54-204ENST00000488321 CHD1O14646 1710 aa25.85■■□□□ 1.73
TRIM54-204ENST00000488321 SYNJ2O15056 1496 aa25.83■■□□□ 1.73
TRIM54-204ENST00000488321 PBRM1Q86U86 1689 aa25.8■■□□□ 1.72
TRIM54-204ENST00000488321 TRIM41Q8WV44 630 aa25.8■■□□□ 1.72
TRIM54-204ENST00000488321 ARHGEF11O15085 1522 aa25.68■■□□□ 1.7
TRIM54-204ENST00000488321 ERICH3Q5RHP9 1530 aa25.68■■□□□ 1.7
TRIM54-204ENST00000488321 FHAD1B1AJZ9 1412 aa25.68■■□□□ 1.7
TRIM54-204ENST00000488321 ADAMTS12P58397 1594 aa25.67■■□□□ 1.7
TRIM54-204ENST00000488321 RIMBP3CA6NJZ7 1639 aa25.66■■□□□ 1.7
TRIM54-204ENST00000488321 RIMBP3BA6NNM3 1639 aa25.66■■□□□ 1.7
TRIM54-204ENST00000488321 RIMBP3Q9UFD9 1639 aa25.66■■□□□ 1.7
TRIM54-204ENST00000488321 GRIN2AQ12879 1464 aa25.65■■□□□ 1.7
TRIM54-204ENST00000488321 KIF27Q86VH2 1401 aa25.64■■□□□ 1.7
TRIM54-204ENST00000488321 CLASP1Q7Z460 1538 aa25.63■■□□□ 1.69
TRIM54-204ENST00000488321 CYB5RLQ6IPT4 315 aa25.56■■□□□ 1.68
TRIM54-204ENST00000488321 IGF1RP08069 1367 aa25.55■■□□□ 1.68
TRIM54-204ENST00000488321 NUP160Q12769 1436 aa25.52■■□□□ 1.68
TRIM54-204ENST00000488321 CEP170Q5SW79 1584 aa25.49■■□□□ 1.67
TRIM54-204ENST00000488321 ARAP1Q96P48 1450 aa25.47■■□□□ 1.67
TRIM54-204ENST00000488321 CARMIL1Q5VZK9 1371 aa25.41■■□□□ 1.66
TRIM54-204ENST00000488321 CUL7Q14999 1698 aa25.39■■□□□ 1.66
TRIM54-204ENST00000488321 RUSC2Q8N2Y8 1516 aa25.36■■□□□ 1.65
TRIM54-204ENST00000488321 JPH4Q96JJ6 628 aa25.33■■□□□ 1.65
TRIM54-204ENST00000488321 ERCC6L2Q5T890 1561 aa25.3■■□□□ 1.64
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms