RNA–Protein interactions for RNA: ENST00000486254.3

PKP4-213, Transcript of plakophilin 4, humanhuman

TSL 2

Gene PKP4, Length 1,566 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PKP4-213ENST00000486254 NISCHQ9Y2I1 1504 aa26.64■■□□□ 1.86
PKP4-213ENST00000486254 CCDC180Q9P1Z9 1646 aa23.22■■□□□ 1.31
PKP4-213ENST00000486254 ZCCHC6Q5VYS8 1495 aaKnown RBP22.48■■□□□ 1.19
PKP4-213ENST00000486254 DCAF1Q9Y4B6 1507 aa22.19■■□□□ 1.14
PKP4-213ENST00000486254 MYO15BQ96JP2 1530 aa21.85■■□□□ 1.09
PKP4-213ENST00000486254 SHROOM4Q9ULL8 1493 aa21.62■■□□□ 1.05
PKP4-213ENST00000486254 DCAF8L2P0C7V8 631 aa21.53■■□□□ 1.04
PKP4-213ENST00000486254 NACADO15069 1562 aa21.51■■□□□ 1.03
PKP4-213ENST00000486254 ABCC9O60706 1549 aa21.4■■□□□ 1.02
PKP4-213ENST00000486254 RB1CC1Q8TDY2 1594 aa21.21■□□□□ 0.99
PKP4-213ENST00000486254 SCRIBQ14160 1630 aa21.16■□□□□ 0.98
PKP4-213ENST00000486254 SUPT5HO00267 1087 aaKnown RBP20.94■□□□□ 0.94
PKP4-213ENST00000486254 UNC13AQ9UPW8 1703 aa20.76■□□□□ 0.91
PKP4-213ENST00000486254 RSF1Q96T23 1441 aaPredicted RBP20.73■□□□□ 0.91
PKP4-213ENST00000486254 BAZ1AQ9NRL2 1556 aaPredicted RBP20.58■□□□□ 0.89
PKP4-213ENST00000486254 CECR2Q9BXF3 1484 aa20.56■□□□□ 0.88
PKP4-213ENST00000486254 BICRAQ9NZM4 1560 aa20.54■□□□□ 0.88
PKP4-213ENST00000486254 MROH2BQ7Z745 1585 aa20.52■□□□□ 0.88
PKP4-213ENST00000486254 SMARCA4P51532 1647 aa20.42■□□□□ 0.86
PKP4-213ENST00000486254 WIZO95785 1651 aa20.35■□□□□ 0.85
PKP4-213ENST00000486254 CHIC1Q5VXU3 224 aa20.34■□□□□ 0.85
PKP4-213ENST00000486254 PEG3Q9GZU2 1588 aa20.27■□□□□ 0.84
PKP4-213ENST00000486254 TOP2AP11388 1531 aaKnown RBP20.26■□□□□ 0.83
PKP4-213ENST00000486254 PABPN1Q86U42 306 aaKnown RBP eCLIP20.13■□□□□ 0.818e-8■□□□□ 11.2
PKP4-213ENST00000486254 EIF4G1Q04637 1599 aaKnown RBP20.07■□□□□ 0.8
PKP4-213ENST00000486254 SMARCA2P51531 1590 aa20.06■□□□□ 0.8
PKP4-213ENST00000486254 ATAD2BQ9ULI0 1458 aa19.99■□□□□ 0.79
PKP4-213ENST00000486254 CCDC88BA6NC98 1476 aa19.96■□□□□ 0.79
PKP4-213ENST00000486254 HMGXB3Q12766 1538 aa19.88■□□□□ 0.77
PKP4-213ENST00000486254 BAZ1BQ9UIG0 1483 aaKnown RBP19.87■□□□□ 0.77
PKP4-213ENST00000486254 NCAPD3P42695 1498 aa19.82■□□□□ 0.76
PKP4-213ENST00000486254 TRIM41Q8WV44 630 aa19.78■□□□□ 0.76
PKP4-213ENST00000486254 AEBP2Q6ZN18 517 aaPredicted RBP19.74■□□□□ 0.75
PKP4-213ENST00000486254 ABCC8Q09428 1581 aa19.57■□□□□ 0.72
PKP4-213ENST00000486254 WRNQ14191 1432 aaPredicted RBP eCLIP19.51■□□□□ 0.71
PKP4-213ENST00000486254 EEA1Q15075 1411 aa19.51■□□□□ 0.71
PKP4-213ENST00000486254 CC2D2AQ9P2K1 1620 aa19.48■□□□□ 0.71
PKP4-213ENST00000486254 CFTRP13569 1480 aa19.45■□□□□ 0.7
PKP4-213ENST00000486254 PRDM2Q13029 1718 aa19.45■□□□□ 0.7
PKP4-213ENST00000486254 LOC105371045A0A1W2PR82 267 aa19.42■□□□□ 0.7
PKP4-213ENST00000486254 SYNJ1O43426 1573 aa19.4■□□□□ 0.7
PKP4-213ENST00000486254 TOP2BQ02880 1626 aa19.38■□□□□ 0.69
PKP4-213ENST00000486254 BIVM-ERCC5R4GMW8 1640 aa19.38■□□□□ 0.69
PKP4-213ENST00000486254 CADPSQ9ULU8 1353 aa19.27■□□□□ 0.68
PKP4-213ENST00000486254 SOGA1O94964 1423 aa19.26■□□□□ 0.67
PKP4-213ENST00000486254 FAM9AQ8IZU1 332 aaPredicted RBP19.26■□□□□ 0.67
PKP4-213ENST00000486254 KIF21BO75037 1637 aa19.2■□□□□ 0.66
PKP4-213ENST00000486254 CUX1P39880 1505 aa19.19■□□□□ 0.66
PKP4-213ENST00000486254 CSRNP3Q8WYN3 585 aa19.18■□□□□ 0.66
PKP4-213ENST00000486254 GOLGA3Q08378 1498 aa19.15■□□□□ 0.66
PKP4-213ENST00000486254 TNIKQ9UKE5 1360 aa19.15■□□□□ 0.66
PKP4-213ENST00000486254 CEP164Q9UPV0 1460 aa19.15■□□□□ 0.66
PKP4-213ENST00000486254 RUSC2Q8N2Y8 1516 aa19.13■□□□□ 0.65
PKP4-213ENST00000486254 LAMC3Q9Y6N6 1575 aa19.12■□□□□ 0.65
PKP4-213ENST00000486254 ERICH3Q5RHP9 1530 aa19.05■□□□□ 0.64
PKP4-213ENST00000486254 FANCD2Q9BXW9 1451 aa19.04■□□□□ 0.64
PKP4-213ENST00000486254 CEP162Q5TB80 1403 aa19.01■□□□□ 0.63
PKP4-213ENST00000486254 KIF27Q86VH2 1401 aa19.01■□□□□ 0.63
PKP4-213ENST00000486254 DNMBPQ6XZF7 1577 aa18.99■□□□□ 0.63
PKP4-213ENST00000486254 PRXQ9BXM0 1461 aa18.98■□□□□ 0.63
PKP4-213ENST00000486254 TRIM26Q12899 539 aaPredicted RBP18.93■□□□□ 0.62
PKP4-213ENST00000486254 FGD5Q6ZNL6 1462 aa18.92■□□□□ 0.62
PKP4-213ENST00000486254 RAPGEF2Q9Y4G8 1499 aa18.9■□□□□ 0.62
PKP4-213ENST00000486254 PDS5BQ9NTI5 1447 aa18.9■□□□□ 0.62
PKP4-213ENST00000486254 TOPBP1Q92547 1522 aa18.89■□□□□ 0.61
PKP4-213ENST00000486254 NESP48681 1621 aa18.89■□□□□ 0.61
PKP4-213ENST00000486254 UBTFP17480 764 aaKnown RBP18.85■□□□□ 0.61
PKP4-213ENST00000486254 PCGF6Q9BYE7 350 aa18.85■□□□□ 0.61
PKP4-213ENST00000486254 ABCA10Q8WWZ4 1543 aa18.85■□□□□ 0.61
PKP4-213ENST00000486254 CUX2O14529 1486 aa18.83■□□□□ 0.61
PKP4-213ENST00000486254 EHMT2Q96KQ7 1210 aa18.83■□□□□ 0.6
PKP4-213ENST00000486254 POLA1P09884 1462 aaPredicted RBP18.81■□□□□ 0.6
PKP4-213ENST00000486254 CLIP1P30622 1438 aa18.8■□□□□ 0.6
PKP4-213ENST00000486254 WDR97A6NE52 1622 aa18.78■□□□□ 0.6
PKP4-213ENST00000486254 URB2Q14146 1524 aaKnown RBP18.78■□□□□ 0.6
PKP4-213ENST00000486254 IGF1RP08069 1367 aa18.76■□□□□ 0.59
PKP4-213ENST00000486254 KIF21AQ7Z4S6 1674 aa18.75■□□□□ 0.59
PKP4-213ENST00000486254 VPS8Q8N3P4 1428 aa18.73■□□□□ 0.59
PKP4-213ENST00000486254 CUL7Q14999 1698 aa18.72■□□□□ 0.59
PKP4-213ENST00000486254 HRCP23327 699 aa18.68■□□□□ 0.58
PKP4-213ENST00000486254 ABCA5Q8WWZ7 1642 aa18.67■□□□□ 0.58
PKP4-213ENST00000486254 DNAJC5BQ9UF47 199 aa18.67■□□□□ 0.58
PKP4-213ENST00000486254 CARMIL1Q5VZK9 1371 aa18.66■□□□□ 0.58
PKP4-213ENST00000486254 MRC2Q9UBG0 1479 aa18.65■□□□□ 0.58
PKP4-213ENST00000486254 RAD54L2Q9Y4B4 1467 aa18.65■□□□□ 0.58
PKP4-213ENST00000486254 TARBP1Q13395 1621 aaKnown RBP18.62■□□□□ 0.57
PKP4-213ENST00000486254 ARAP1Q96P48 1450 aa18.59■□□□□ 0.57
PKP4-213ENST00000486254 WDR62O43379 1518 aa18.58■□□□□ 0.56
PKP4-213ENST00000486254 GAPVD1Q14C86 1478 aa18.54■□□□□ 0.56
PKP4-213ENST00000486254 ARHGAP35Q9NRY4 1499 aa18.54■□□□□ 0.56
PKP4-213ENST00000486254 CTTNBP2Q8WZ74 1663 aa18.51■□□□□ 0.55
PKP4-213ENST00000486254 EFCAB5A4FU69 1503 aa18.5■□□□□ 0.55
PKP4-213ENST00000486254 IFT140Q96RY7 1462 aa18.48■□□□□ 0.55
PKP4-213ENST00000486254 MAP3K1Q13233 1512 aa18.47■□□□□ 0.55
PKP4-213ENST00000486254 PBRM1Q86U86 1689 aa18.46■□□□□ 0.54
PKP4-213ENST00000486254 THOC2Q8NI27 1593 aaKnown RBP18.43■□□□□ 0.54
PKP4-213ENST00000486254 TDRD9Q8NDG6 1382 aaKnown RBP18.42■□□□□ 0.54
PKP4-213ENST00000486254 ZEB1P37275 1124 aaPredicted RBP18.42■□□□□ 0.54
PKP4-213ENST00000486254 APLP2Q06481 763 aa18.42■□□□□ 0.54
PKP4-213ENST00000486254 FHAD1B1AJZ9 1412 aa18.41■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 52.8 ms