RNA–Protein interactions for RNA: ENST00000485746.1

PTCD1-205, Transcript of pentatricopeptide repeat domain 1, humanhuman

TSL 3

Gene PTCD1, Length 721 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD1-205ENST00000485746 NISCHQ9Y2I1 1504 aa30.19■■■□□ 2.42
PTCD1-205ENST00000485746 CCDC180Q9P1Z9 1646 aa26.78■■□□□ 1.88
PTCD1-205ENST00000485746 ABCC9O60706 1549 aa26.49■■□□□ 1.83
PTCD1-205ENST00000485746 DCAF8L2P0C7V8 631 aa25.57■■□□□ 1.68
PTCD1-205ENST00000485746 RB1CC1Q8TDY2 1594 aa25.36■■□□□ 1.65
PTCD1-205ENST00000485746 NACADO15069 1562 aa25.29■■□□□ 1.64
PTCD1-205ENST00000485746 ZCCHC6Q5VYS8 1495 aaKnown RBP25.09■■□□□ 1.61
PTCD1-205ENST00000485746 MYO15BQ96JP2 1530 aa25.05■■□□□ 1.6
PTCD1-205ENST00000485746 DCAF1Q9Y4B6 1507 aa24.91■■□□□ 1.58
PTCD1-205ENST00000485746 PABPN1Q86U42 306 aaKnown RBP eCLIP24.82■■□□□ 1.56
PTCD1-205ENST00000485746 UNC13AQ9UPW8 1703 aa24.61■■□□□ 1.53
PTCD1-205ENST00000485746 SCRIBQ14160 1630 aa24.54■■□□□ 1.52
PTCD1-205ENST00000485746 BICRAQ9NZM4 1560 aa24.51■■□□□ 1.51
PTCD1-205ENST00000485746 DNAJC5BQ9UF47 199 aa24.4■■□□□ 1.5
PTCD1-205ENST00000485746 SHROOM4Q9ULL8 1493 aa24.26■■□□□ 1.47
PTCD1-205ENST00000485746 EIF4G1Q04637 1599 aaKnown RBP23.93■■□□□ 1.42
PTCD1-205ENST00000485746 CC2D2AQ9P2K1 1620 aa23.86■■□□□ 1.41
PTCD1-205ENST00000485746 CECR2Q9BXF3 1484 aa23.8■■□□□ 1.4
PTCD1-205ENST00000485746 SMARCA4P51532 1647 aa23.41■■□□□ 1.34
PTCD1-205ENST00000485746 BAZ1AQ9NRL2 1556 aaPredicted RBP23.41■■□□□ 1.34
PTCD1-205ENST00000485746 ATAD2BQ9ULI0 1458 aa23.36■■□□□ 1.33
PTCD1-205ENST00000485746 NCAPD3P42695 1498 aa23.36■■□□□ 1.33
PTCD1-205ENST00000485746 SMARCA2P51531 1590 aa23.33■■□□□ 1.33
PTCD1-205ENST00000485746 MROH2BQ7Z745 1585 aa23.27■■□□□ 1.32
PTCD1-205ENST00000485746 BAZ1BQ9UIG0 1483 aaKnown RBP23.21■■□□□ 1.31
PTCD1-205ENST00000485746 HMGXB3Q12766 1538 aa23.18■■□□□ 1.3
PTCD1-205ENST00000485746 PEG3Q9GZU2 1588 aa23.13■■□□□ 1.29
PTCD1-205ENST00000485746 RSF1Q96T23 1441 aaPredicted RBP23■■□□□ 1.27
PTCD1-205ENST00000485746 WIZO95785 1651 aa22.99■■□□□ 1.27
PTCD1-205ENST00000485746 ERCC6Q03468 1493 aa22.89■■□□□ 1.25
PTCD1-205ENST00000485746 NESP48681 1621 aa22.84■■□□□ 1.25
PTCD1-205ENST00000485746 TOP2AP11388 1531 aaKnown RBP22.76■■□□□ 1.23
PTCD1-205ENST00000485746 CADPSQ9ULU8 1353 aa22.74■■□□□ 1.23
PTCD1-205ENST00000485746 LAMC3Q9Y6N6 1575 aa22.73■■□□□ 1.23
PTCD1-205ENST00000485746 PDS5BQ9NTI5 1447 aa22.69■■□□□ 1.22
PTCD1-205ENST00000485746 CUX2O14529 1486 aa22.59■■□□□ 1.21
PTCD1-205ENST00000485746 SUPT5HO00267 1087 aaKnown RBP22.55■■□□□ 1.2
PTCD1-205ENST00000485746 CCDC88BA6NC98 1476 aa22.54■■□□□ 1.2
PTCD1-205ENST00000485746 CFTRP13569 1480 aa22.52■■□□□ 1.2
PTCD1-205ENST00000485746 KIF21AQ7Z4S6 1674 aa22.48■■□□□ 1.19
PTCD1-205ENST00000485746 FANCD2Q9BXW9 1451 aa22.46■■□□□ 1.19
PTCD1-205ENST00000485746 CEP164Q9UPV0 1460 aa22.44■■□□□ 1.18
PTCD1-205ENST00000485746 THOC2Q8NI27 1593 aaKnown RBP22.42■■□□□ 1.18
PTCD1-205ENST00000485746 MRC2Q9UBG0 1479 aa22.41■■□□□ 1.18
PTCD1-205ENST00000485746 WDR62O43379 1518 aa22.27■■□□□ 1.16
PTCD1-205ENST00000485746 URB2Q14146 1524 aaKnown RBP22.19■■□□□ 1.14
PTCD1-205ENST00000485746 PRDM2Q13029 1718 aa22.18■■□□□ 1.14
PTCD1-205ENST00000485746 ABCC8Q09428 1581 aa22.08■■□□□ 1.13
PTCD1-205ENST00000485746 DNAJC5Q9H3Z4 198 aa22.08■■□□□ 1.13
PTCD1-205ENST00000485746 TOPBP1Q92547 1522 aa22.06■■□□□ 1.12
PTCD1-205ENST00000485746 DNMBPQ6XZF7 1577 aa21.99■■□□□ 1.11
PTCD1-205ENST00000485746 IFT140Q96RY7 1462 aa21.97■■□□□ 1.11
PTCD1-205ENST00000485746 SOGA1O94964 1423 aa21.86■■□□□ 1.09
PTCD1-205ENST00000485746 ZNF608Q9ULD9 1512 aaPredicted RBP21.85■■□□□ 1.09
PTCD1-205ENST00000485746 POLA1P09884 1462 aaPredicted RBP21.85■■□□□ 1.09
PTCD1-205ENST00000485746 CUX1P39880 1505 aa21.83■■□□□ 1.09
PTCD1-205ENST00000485746 FGD5Q6ZNL6 1462 aa21.81■■□□□ 1.08
PTCD1-205ENST00000485746 RAD54L2Q9Y4B4 1467 aa21.81■■□□□ 1.08
PTCD1-205ENST00000485746 AQRO60306 1485 aaKnown RBP eCLIP21.77■■□□□ 1.086e-7■■■■■ 40.2
PTCD1-205ENST00000485746 OSCARQ8IYS5 282 aa21.77■■□□□ 1.08
PTCD1-205ENST00000485746 TDRD9Q8NDG6 1382 aaKnown RBP21.74■■□□□ 1.07
PTCD1-205ENST00000485746 TARBP1Q13395 1621 aaKnown RBP21.74■■□□□ 1.07
PTCD1-205ENST00000485746 WRNQ14191 1432 aaPredicted RBP eCLIP21.72■■□□□ 1.07
PTCD1-205ENST00000485746 EIF4G3O43432 1585 aaKnown RBP21.7■■□□□ 1.06
PTCD1-205ENST00000485746 FBLN2P98095 1184 aa21.69■■□□□ 1.06
PTCD1-205ENST00000485746 TOP2BQ02880 1626 aa21.59■■□□□ 1.05
PTCD1-205ENST00000485746 SYNJ1O43426 1573 aa21.58■■□□□ 1.05
PTCD1-205ENST00000485746 ABCA10Q8WWZ4 1543 aa21.57■■□□□ 1.04
PTCD1-205ENST00000485746 CHMP7Q8WUX9 453 aaPredicted RBP21.57■■□□□ 1.04
PTCD1-205ENST00000485746 WDR97A6NE52 1622 aa21.57■■□□□ 1.04
PTCD1-205ENST00000485746 GRIN2BQ13224 1484 aa21.57■■□□□ 1.04
PTCD1-205ENST00000485746 GAPVD1Q14C86 1478 aa21.57■■□□□ 1.04
PTCD1-205ENST00000485746 BIVM-ERCC5R4GMW8 1640 aa21.55■■□□□ 1.04
PTCD1-205ENST00000485746 SNAPC4Q5SXM2 1469 aa21.55■■□□□ 1.04
PTCD1-205ENST00000485746 MAGI1Q96QZ7 1491 aaPredicted RBP21.49■■□□□ 1.03
PTCD1-205ENST00000485746 TRIM41Q8WV44 630 aa21.45■■□□□ 1.02
PTCD1-205ENST00000485746 CHD1O14646 1710 aa21.42■■□□□ 1.02
PTCD1-205ENST00000485746 SYNJ2O15056 1496 aa21.42■■□□□ 1.02
PTCD1-205ENST00000485746 ABCA5Q8WWZ7 1642 aa21.42■■□□□ 1.02
PTCD1-205ENST00000485746 PBRM1Q86U86 1689 aa21.4■■□□□ 1.02
PTCD1-205ENST00000485746 FHAD1B1AJZ9 1412 aa21.31■■□□□ 1
PTCD1-205ENST00000485746 KIF27Q86VH2 1401 aa21.31■■□□□ 1
PTCD1-205ENST00000485746 ERICH3Q5RHP9 1530 aa21.3■■□□□ 1
PTCD1-205ENST00000485746 ARHGEF11O15085 1522 aa21.27■■□□□ 1
PTCD1-205ENST00000485746 GRIN2AQ12879 1464 aa21.26■□□□□ 0.99
PTCD1-205ENST00000485746 RIMBP3CA6NJZ7 1639 aa21.26■□□□□ 0.99
PTCD1-205ENST00000485746 RIMBP3BA6NNM3 1639 aa21.26■□□□□ 0.99
PTCD1-205ENST00000485746 RIMBP3Q9UFD9 1639 aa21.26■□□□□ 0.99
PTCD1-205ENST00000485746 ADAMTS12P58397 1594 aa21.25■□□□□ 0.99
PTCD1-205ENST00000485746 CYB5RLQ6IPT4 315 aa21.25■□□□□ 0.99
PTCD1-205ENST00000485746 IGF1RP08069 1367 aa21.22■□□□□ 0.99
PTCD1-205ENST00000485746 CLASP1Q7Z460 1538 aa21.21■□□□□ 0.99
PTCD1-205ENST00000485746 NUP160Q12769 1436 aa21.15■□□□□ 0.98
PTCD1-205ENST00000485746 CARMIL1Q5VZK9 1371 aa21.13■□□□□ 0.97
PTCD1-205ENST00000485746 CEP170Q5SW79 1584 aa21.11■□□□□ 0.97
PTCD1-205ENST00000485746 ARAP1Q96P48 1450 aa21.09■□□□□ 0.97
PTCD1-205ENST00000485746 JPH4Q96JJ6 628 aa21.07■□□□□ 0.96
PTCD1-205ENST00000485746 CUL7Q14999 1698 aa21.06■□□□□ 0.96
PTCD1-205ENST00000485746 RUSC2Q8N2Y8 1516 aa21.03■□□□□ 0.96
PTCD1-205ENST00000485746 PRG4Q92954 1404 aaPredicted RBP20.99■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms