RNA–Protein interactions for RNA: ENST00000484087.5

BRCA1-216, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 5

Gene BRCA1, Length 1,495 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-216ENST00000484087 AEBP2Q6ZN18 517 aaPredicted RBP18.84■□□□□ 0.61
BRCA1-216ENST00000484087 CHIC1Q5VXU3 224 aa17.62■□□□□ 0.41
BRCA1-216ENST00000484087 NISCHQ9Y2I1 1504 aa16.72■□□□□ 0.27
BRCA1-216ENST00000484087 SENP3Q9H4L4 574 aaPredicted RBP16.17■□□□□ 0.18
BRCA1-216ENST00000484087 PHF23Q9BUL5 403 aaPredicted RBP15.85■□□□□ 0.13
BRCA1-216ENST00000484087 FOXD1Q16676 465 aa15.13■□□□□ 0.01
BRCA1-216ENST00000484087 POTEDQ86YR6 584 aa15.06■□□□□ 0
BRCA1-216ENST00000484087 CCDC180Q9P1Z9 1646 aa14.9□□□□□ -0.02
BRCA1-216ENST00000484087 ABCC9O60706 1549 aa14.72□□□□□ -0.05
BRCA1-216ENST00000484087 MSH5O43196 834 aa14.4□□□□□ -0.1
BRCA1-216ENST00000484087 RB1CC1Q8TDY2 1594 aa14.04□□□□□ -0.16
BRCA1-216ENST00000484087 DCAF8L2P0C7V8 631 aa14.03□□□□□ -0.16
BRCA1-216ENST00000484087 PIAS4Q8N2W9 510 aaPredicted RBP14□□□□□ -0.17
BRCA1-216ENST00000484087 NACADO15069 1562 aa13.97□□□□□ -0.17
BRCA1-216ENST00000484087 PLPPR3Q6T4P5 718 aa13.94□□□□□ -0.18
BRCA1-216ENST00000484087 ZCCHC6Q5VYS8 1495 aaKnown RBP13.94□□□□□ -0.18
BRCA1-216ENST00000484087 UNC13AQ9UPW8 1703 aa13.89□□□□□ -0.19
BRCA1-216ENST00000484087 PPP6R1Q9UPN7 881 aa13.83□□□□□ -0.2
BRCA1-216ENST00000484087 MYO15BQ96JP2 1530 aa13.79□□□□□ -0.2
BRCA1-216ENST00000484087 ADRA2BP18089 450 aa13.75□□□□□ -0.21
BRCA1-216ENST00000484087 DCAF1Q9Y4B6 1507 aa13.74□□□□□ -0.21
BRCA1-216ENST00000484087 PABPN1Q86U42 306 aaKnown RBP eCLIP13.73□□□□□ -0.21
BRCA1-216ENST00000484087 SCRIBQ14160 1630 aa13.71□□□□□ -0.21
BRCA1-216ENST00000484087 BICRAQ9NZM4 1560 aa13.7□□□□□ -0.22
BRCA1-216ENST00000484087 DNAJC5BQ9UF47 199 aa13.56□□□□□ -0.24
BRCA1-216ENST00000484087 SHROOM4Q9ULL8 1493 aa13.35□□□□□ -0.27
BRCA1-216ENST00000484087 EIF4G1Q04637 1599 aaKnown RBP13.32□□□□□ -0.28
BRCA1-216ENST00000484087 CC2D2AQ9P2K1 1620 aa13.3□□□□□ -0.28
BRCA1-216ENST00000484087 CECR2Q9BXF3 1484 aa13.17□□□□□ -0.3
BRCA1-216ENST00000484087 SMARCA4P51532 1647 aa13.04□□□□□ -0.32
BRCA1-216ENST00000484087 MROH2BQ7Z745 1585 aa12.95□□□□□ -0.34
BRCA1-216ENST00000484087 BAZ1AQ9NRL2 1556 aaPredicted RBP12.95□□□□□ -0.34
BRCA1-216ENST00000484087 ATAD2BQ9ULI0 1458 aa12.93□□□□□ -0.34
BRCA1-216ENST00000484087 SMARCA2P51531 1590 aa12.88□□□□□ -0.35
BRCA1-216ENST00000484087 NCAPD3P42695 1498 aa12.87□□□□□ -0.35
BRCA1-216ENST00000484087 WIZO95785 1651 aa12.86□□□□□ -0.35
BRCA1-216ENST00000484087 HMGXB3Q12766 1538 aa12.85□□□□□ -0.35
BRCA1-216ENST00000484087 PEG3Q9GZU2 1588 aa12.84□□□□□ -0.35
BRCA1-216ENST00000484087 BAZ1BQ9UIG0 1483 aaKnown RBP12.84□□□□□ -0.35
BRCA1-216ENST00000484087 NESP48681 1621 aa12.75□□□□□ -0.37
BRCA1-216ENST00000484087 DMRT2Q9Y5R5 561 aa12.72□□□□□ -0.37
BRCA1-216ENST00000484087 CACNB1Q02641 598 aaPredicted RBP12.72□□□□□ -0.37
BRCA1-216ENST00000484087 RSF1Q96T23 1441 aaPredicted RBP12.72□□□□□ -0.37
BRCA1-216ENST00000484087 MAPK8IP2Q13387 824 aaPredicted RBP12.7□□□□□ -0.38
BRCA1-216ENST00000484087 ERCC6Q03468 1493 aa12.64□□□□□ -0.39
BRCA1-216ENST00000484087 KIF21AQ7Z4S6 1674 aa12.63□□□□□ -0.39
BRCA1-216ENST00000484087 TOP2AP11388 1531 aaKnown RBP12.63□□□□□ -0.39
BRCA1-216ENST00000484087 SCAF1Q9H7N4 1312 aaKnown RBP12.6□□□□□ -0.39
BRCA1-216ENST00000484087 LAMC3Q9Y6N6 1575 aa12.59□□□□□ -0.39
BRCA1-216ENST00000484087 THOC2Q8NI27 1593 aaKnown RBP12.55□□□□□ -0.4
BRCA1-216ENST00000484087 CADPSQ9ULU8 1353 aa12.5□□□□□ -0.41
BRCA1-216ENST00000484087 CCDC88BA6NC98 1476 aa12.48□□□□□ -0.41
BRCA1-216ENST00000484087 CUX2O14529 1486 aa12.46□□□□□ -0.42
BRCA1-216ENST00000484087 PDS5BQ9NTI5 1447 aa12.45□□□□□ -0.42
BRCA1-216ENST00000484087 PRDM2Q13029 1718 aa12.45□□□□□ -0.42
BRCA1-216ENST00000484087 CFTRP13569 1480 aa12.44□□□□□ -0.42
BRCA1-216ENST00000484087 FANCD2Q9BXW9 1451 aa12.43□□□□□ -0.42
BRCA1-216ENST00000484087 SUPT5HO00267 1087 aaKnown RBP12.4□□□□□ -0.42
BRCA1-216ENST00000484087 CEP164Q9UPV0 1460 aa12.4□□□□□ -0.42
BRCA1-216ENST00000484087 MRC2Q9UBG0 1479 aa12.4□□□□□ -0.43
BRCA1-216ENST00000484087 WDR62O43379 1518 aa12.38□□□□□ -0.43
BRCA1-216ENST00000484087 URB2Q14146 1524 aaKnown RBP12.34□□□□□ -0.43
BRCA1-216ENST00000484087 TOPBP1Q92547 1522 aa12.24□□□□□ -0.45
BRCA1-216ENST00000484087 RNF39Q9H2S5 420 aa12.23□□□□□ -0.45
BRCA1-216ENST00000484087 DCAF8L1A6NGE4 600 aa12.22□□□□□ -0.45
BRCA1-216ENST00000484087 DNMBPQ6XZF7 1577 aa12.2□□□□□ -0.46
BRCA1-216ENST00000484087 PPP4R3CPQ6ZMV5 832 aa12.19□□□□□ -0.46
BRCA1-216ENST00000484087 ZNF608Q9ULD9 1512 aaPredicted RBP12.18□□□□□ -0.46
BRCA1-216ENST00000484087 HOXD11P31277 338 aaPredicted RBP12.16□□□□□ -0.46
BRCA1-216ENST00000484087 CUX1P39880 1505 aa12.15□□□□□ -0.46
BRCA1-216ENST00000484087 DNAJC5Q9H3Z4 198 aa12.14□□□□□ -0.47
BRCA1-216ENST00000484087 EIF4G3O43432 1585 aaKnown RBP12.13□□□□□ -0.47
BRCA1-216ENST00000484087 POLA1P09884 1462 aaPredicted RBP12.13□□□□□ -0.47
BRCA1-216ENST00000484087 TARBP1Q13395 1621 aaKnown RBP12.13□□□□□ -0.47
BRCA1-216ENST00000484087 RAD54L2Q9Y4B4 1467 aa12.12□□□□□ -0.47
BRCA1-216ENST00000484087 ABCC8Q09428 1581 aa12.11□□□□□ -0.47
BRCA1-216ENST00000484087 IFT140Q96RY7 1462 aa12.11□□□□□ -0.47
BRCA1-216ENST00000484087 FGD5Q6ZNL6 1462 aa12.1□□□□□ -0.47
BRCA1-216ENST00000484087 WDR97A6NE52 1622 aa12.07□□□□□ -0.48
BRCA1-216ENST00000484087 SYNJ1O43426 1573 aa12.06□□□□□ -0.48
BRCA1-216ENST00000484087 AQRO60306 1485 aaKnown RBP eCLIP12.06□□□□□ -0.48
BRCA1-216ENST00000484087 CNKSR2Q8WXI2 1034 aa12.03□□□□□ -0.48
BRCA1-216ENST00000484087 CHD1O14646 1710 aa12.03□□□□□ -0.48
BRCA1-216ENST00000484087 SOGA1O94964 1423 aa12.03□□□□□ -0.48
BRCA1-216ENST00000484087 BIVM-ERCC5R4GMW8 1640 aa12.02□□□□□ -0.49
BRCA1-216ENST00000484087 TDRD9Q8NDG6 1382 aaKnown RBP12.02□□□□□ -0.49
BRCA1-216ENST00000484087 C1QBPQ07021 282 aaKnown RBP12.01□□□□□ -0.49
BRCA1-216ENST00000484087 PBRM1Q86U86 1689 aa12□□□□□ -0.49
BRCA1-216ENST00000484087 TOP2BQ02880 1626 aa11.99□□□□□ -0.49
BRCA1-216ENST00000484087 RNF216Q9NWF9 866 aaPredicted RBP11.99□□□□□ -0.49
BRCA1-216ENST00000484087 WRNQ14191 1432 aaPredicted RBP eCLIP11.99□□□□□ -0.49
BRCA1-216ENST00000484087 SNAPC4Q5SXM2 1469 aa11.96□□□□□ -0.49
BRCA1-216ENST00000484087 ABCA5Q8WWZ7 1642 aa11.96□□□□□ -0.5
BRCA1-216ENST00000484087 ABCA10Q8WWZ4 1543 aa11.92□□□□□ -0.5
BRCA1-216ENST00000484087 FBLN2P98095 1184 aa11.91□□□□□ -0.5
BRCA1-216ENST00000484087 GAPVD1Q14C86 1478 aa11.9□□□□□ -0.5
BRCA1-216ENST00000484087 OSCARQ8IYS5 282 aa11.89□□□□□ -0.51
BRCA1-216ENST00000484087 GRIN2BQ13224 1484 aa11.89□□□□□ -0.51
BRCA1-216ENST00000484087 RIMBP3CA6NJZ7 1639 aa11.88□□□□□ -0.51
BRCA1-216ENST00000484087 RIMBP3BA6NNM3 1639 aa11.88□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms