RNA–Protein interactions for RNA: ENST00000483546.1

RPP40-206, Transcript of ribonuclease P/MRP subunit p40, humanhuman

TSL 3

Gene RPP40, Length 654 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPP40-206ENST00000483546 NISCHQ9Y2I1 1504 aa37.77■■■■□ 3.64
RPP40-206ENST00000483546 CCDC180Q9P1Z9 1646 aa33.64■■■□□ 2.98
RPP40-206ENST00000483546 ABCC9O60706 1549 aa32.61■■■□□ 2.81
RPP40-206ENST00000483546 NACADO15069 1562 aa31.56■■■□□ 2.64
RPP40-206ENST00000483546 RB1CC1Q8TDY2 1594 aa31.56■■■□□ 2.64
RPP40-206ENST00000483546 ZCCHC6Q5VYS8 1495 aaKnown RBP31.5■■■□□ 2.63
RPP40-206ENST00000483546 MYO15BQ96JP2 1530 aa31.46■■■□□ 2.63
RPP40-206ENST00000483546 DCAF8L2P0C7V8 631 aa31.35■■■□□ 2.61
RPP40-206ENST00000483546 DCAF1Q9Y4B6 1507 aa31.34■■■□□ 2.61
RPP40-206ENST00000483546 UNC13AQ9UPW8 1703 aa30.82■■■□□ 2.52
RPP40-206ENST00000483546 SCRIBQ14160 1630 aa30.55■■■□□ 2.48
RPP40-206ENST00000483546 BICRAQ9NZM4 1560 aa30.54■■■□□ 2.48
RPP40-206ENST00000483546 PABPN1Q86U42 306 aaKnown RBP eCLIP30.43■■■□□ 2.46
RPP40-206ENST00000483546 SHROOM4Q9ULL8 1493 aa30.38■■■□□ 2.45
RPP40-206ENST00000483546 DNAJC5BQ9UF47 199 aa29.76■■■□□ 2.35
RPP40-206ENST00000483546 EIF4G1Q04637 1599 aaKnown RBP29.73■■■□□ 2.35
RPP40-206ENST00000483546 CC2D2AQ9P2K1 1620 aa29.57■■■□□ 2.32
RPP40-206ENST00000483546 CECR2Q9BXF3 1484 aa29.34■■■□□ 2.29
RPP40-206ENST00000483546 BAZ1AQ9NRL2 1556 aaPredicted RBP29.3■■■□□ 2.28
RPP40-206ENST00000483546 SMARCA4P51532 1647 aa29.3■■■□□ 2.28
RPP40-206ENST00000483546 SMARCA2P51531 1590 aa29.12■■■□□ 2.25
RPP40-206ENST00000483546 NCAPD3P42695 1498 aa29.09■■■□□ 2.25
RPP40-206ENST00000483546 ATAD2BQ9ULI0 1458 aa29.08■■■□□ 2.25
RPP40-206ENST00000483546 PEG3Q9GZU2 1588 aa29.06■■■□□ 2.24
RPP40-206ENST00000483546 MROH2BQ7Z745 1585 aa29.05■■■□□ 2.24
RPP40-206ENST00000483546 HMGXB3Q12766 1538 aa28.99■■■□□ 2.23
RPP40-206ENST00000483546 BAZ1BQ9UIG0 1483 aaKnown RBP28.86■■■□□ 2.21
RPP40-206ENST00000483546 RSF1Q96T23 1441 aaPredicted RBP28.77■■■□□ 2.2
RPP40-206ENST00000483546 WIZO95785 1651 aa28.76■■■□□ 2.19
RPP40-206ENST00000483546 TOP2AP11388 1531 aaKnown RBP28.52■■■□□ 2.16
RPP40-206ENST00000483546 LAMC3Q9Y6N6 1575 aa28.33■■■□□ 2.13
RPP40-206ENST00000483546 NESP48681 1621 aa28.24■■■□□ 2.11
RPP40-206ENST00000483546 CADPSQ9ULU8 1353 aa28.21■■■□□ 2.11
RPP40-206ENST00000483546 ERCC6Q03468 1493 aa28.15■■■□□ 2.1
RPP40-206ENST00000483546 CCDC88BA6NC98 1476 aa28.12■■■□□ 2.09
RPP40-206ENST00000483546 PDS5BQ9NTI5 1447 aa28.11■■■□□ 2.09
RPP40-206ENST00000483546 CFTRP13569 1480 aa28.08■■■□□ 2.09
RPP40-206ENST00000483546 SUPT5HO00267 1087 aaKnown RBP28.02■■■□□ 2.08
RPP40-206ENST00000483546 KIF21AQ7Z4S6 1674 aa28■■■□□ 2.07
RPP40-206ENST00000483546 PRDM2Q13029 1718 aa27.98■■■□□ 2.07
RPP40-206ENST00000483546 THOC2Q8NI27 1593 aaKnown RBP27.89■■■□□ 2.05
RPP40-206ENST00000483546 CUX2O14529 1486 aa27.89■■■□□ 2.05
RPP40-206ENST00000483546 FANCD2Q9BXW9 1451 aa27.88■■■□□ 2.05
RPP40-206ENST00000483546 CEP164Q9UPV0 1460 aa27.86■■■□□ 2.05
RPP40-206ENST00000483546 MRC2Q9UBG0 1479 aa27.8■■■□□ 2.04
RPP40-206ENST00000483546 WDR62O43379 1518 aa27.72■■■□□ 2.03
RPP40-206ENST00000483546 URB2Q14146 1524 aaKnown RBP27.57■■■□□ 2
RPP40-206ENST00000483546 ABCC8Q09428 1581 aa27.56■■■□□ 2
RPP40-206ENST00000483546 DNMBPQ6XZF7 1577 aa27.47■■□□□ 1.99
RPP40-206ENST00000483546 TOPBP1Q92547 1522 aa27.46■■□□□ 1.99
RPP40-206ENST00000483546 IFT140Q96RY7 1462 aa27.29■■□□□ 1.96
RPP40-206ENST00000483546 CUX1P39880 1505 aa27.26■■□□□ 1.96
RPP40-206ENST00000483546 POLA1P09884 1462 aaPredicted RBP27.22■■□□□ 1.95
RPP40-206ENST00000483546 FGD5Q6ZNL6 1462 aa27.17■■□□□ 1.94
RPP40-206ENST00000483546 TARBP1Q13395 1621 aaKnown RBP27.16■■□□□ 1.94
RPP40-206ENST00000483546 WRNQ14191 1432 aaPredicted RBP eCLIP27.16■■□□□ 1.94
RPP40-206ENST00000483546 BIVM-ERCC5R4GMW8 1640 aa27.13■■□□□ 1.93
RPP40-206ENST00000483546 TOP2BQ02880 1626 aa27.12■■□□□ 1.93
RPP40-206ENST00000483546 SOGA1O94964 1423 aa27.1■■□□□ 1.93
RPP40-206ENST00000483546 WDR97A6NE52 1622 aa27.08■■□□□ 1.93
RPP40-206ENST00000483546 ZNF608Q9ULD9 1512 aaPredicted RBP27.06■■□□□ 1.92
RPP40-206ENST00000483546 SYNJ1O43426 1573 aa27.05■■□□□ 1.92
RPP40-206ENST00000483546 RAD54L2Q9Y4B4 1467 aa27.04■■□□□ 1.92
RPP40-206ENST00000483546 EIF4G3O43432 1585 aaKnown RBP27.04■■□□□ 1.92
RPP40-206ENST00000483546 ABCA10Q8WWZ4 1543 aa26.95■■□□□ 1.9
RPP40-206ENST00000483546 AQRO60306 1485 aaKnown RBP eCLIP26.92■■□□□ 1.9
RPP40-206ENST00000483546 TDRD9Q8NDG6 1382 aaKnown RBP26.88■■□□□ 1.89
RPP40-206ENST00000483546 ABCA5Q8WWZ7 1642 aa26.84■■□□□ 1.89
RPP40-206ENST00000483546 DNAJC5Q9H3Z4 198 aa26.82■■□□□ 1.88
RPP40-206ENST00000483546 GAPVD1Q14C86 1478 aa26.81■■□□□ 1.88
RPP40-206ENST00000483546 GRIN2BQ13224 1484 aa26.81■■□□□ 1.88
RPP40-206ENST00000483546 PBRM1Q86U86 1689 aa26.79■■□□□ 1.88
RPP40-206ENST00000483546 MAGI1Q96QZ7 1491 aaPredicted RBP26.76■■□□□ 1.87
RPP40-206ENST00000483546 SNAPC4Q5SXM2 1469 aa26.71■■□□□ 1.87
RPP40-206ENST00000483546 OSCARQ8IYS5 282 aa26.69■■□□□ 1.86
RPP40-206ENST00000483546 CHD1O14646 1710 aa26.68■■□□□ 1.86
RPP40-206ENST00000483546 ERICH3Q5RHP9 1530 aa26.65■■□□□ 1.86
RPP40-206ENST00000483546 SYNJ2O15056 1496 aa26.62■■□□□ 1.85
RPP40-206ENST00000483546 KIF27Q86VH2 1401 aa26.6■■□□□ 1.85
RPP40-206ENST00000483546 ADAMTS12P58397 1594 aa26.57■■□□□ 1.84
RPP40-206ENST00000483546 FBLN2P98095 1184 aa26.55■■□□□ 1.84
RPP40-206ENST00000483546 AEBP2Q6ZN18 517 aaPredicted RBP26.55■■□□□ 1.84
RPP40-206ENST00000483546 CHMP7Q8WUX9 453 aaPredicted RBP26.55■■□□□ 1.84
RPP40-206ENST00000483546 TRIM41Q8WV44 630 aa26.54■■□□□ 1.84
RPP40-206ENST00000483546 FHAD1B1AJZ9 1412 aa26.52■■□□□ 1.84
RPP40-206ENST00000483546 GRIN2AQ12879 1464 aa26.46■■□□□ 1.83
RPP40-206ENST00000483546 CUL7Q14999 1698 aa26.46■■□□□ 1.83
RPP40-206ENST00000483546 IGF1RP08069 1367 aa26.42■■□□□ 1.82
RPP40-206ENST00000483546 CLASP1Q7Z460 1538 aa26.39■■□□□ 1.82
RPP40-206ENST00000483546 NUP160Q12769 1436 aa26.34■■□□□ 1.81
RPP40-206ENST00000483546 CEP170Q5SW79 1584 aa26.29■■□□□ 1.8
RPP40-206ENST00000483546 CARMIL1Q5VZK9 1371 aa26.28■■□□□ 1.8
RPP40-206ENST00000483546 RUSC2Q8N2Y8 1516 aa26.27■■□□□ 1.8
RPP40-206ENST00000483546 ARHGEF11O15085 1522 aa26.26■■□□□ 1.79
RPP40-206ENST00000483546 RIMBP3CA6NJZ7 1639 aa26.25■■□□□ 1.79
RPP40-206ENST00000483546 RIMBP3BA6NNM3 1639 aa26.25■■□□□ 1.79
RPP40-206ENST00000483546 RIMBP3Q9UFD9 1639 aa26.25■■□□□ 1.79
RPP40-206ENST00000483546 CHIC1Q5VXU3 224 aa26.25■■□□□ 1.79
RPP40-206ENST00000483546 EEA1Q15075 1411 aa26.22■■□□□ 1.79
RPP40-206ENST00000483546 RAPGEF2Q9Y4G8 1499 aa26.17■■□□□ 1.78
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms