RNA–Protein interactions for RNA: ENST00000482879.5

SDC1-206, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 558 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-206ENST00000482879 NISCHQ9Y2I1 1504 aa28.84■■■□□ 2.21
SDC1-206ENST00000482879 CCDC180Q9P1Z9 1646 aa25.44■■□□□ 1.66
SDC1-206ENST00000482879 ABCC9O60706 1549 aa24.52■■□□□ 1.52
SDC1-206ENST00000482879 ZCCHC6Q5VYS8 1495 aaKnown RBP24.09■■□□□ 1.45
SDC1-206ENST00000482879 DCAF8L2P0C7V8 631 aa24.02■■□□□ 1.44
SDC1-206ENST00000482879 DCAF1Q9Y4B6 1507 aa23.85■■□□□ 1.41
SDC1-206ENST00000482879 NACADO15069 1562 aa23.82■■□□□ 1.4
SDC1-206ENST00000482879 MYO15BQ96JP2 1530 aa23.78■■□□□ 1.4
SDC1-206ENST00000482879 RB1CC1Q8TDY2 1594 aa23.75■■□□□ 1.39
SDC1-206ENST00000482879 SCRIBQ14160 1630 aa23.28■■□□□ 1.32
SDC1-206ENST00000482879 UNC13AQ9UPW8 1703 aa23.26■■□□□ 1.31
SDC1-206ENST00000482879 SHROOM4Q9ULL8 1493 aa23.11■■□□□ 1.29
SDC1-206ENST00000482879 PABPN1Q86U42 306 aaKnown RBP eCLIP23.02■■□□□ 1.28
SDC1-206ENST00000482879 BICRAQ9NZM4 1560 aa23.01■■□□□ 1.27
SDC1-206ENST00000482879 CECR2Q9BXF3 1484 aa22.44■■□□□ 1.18
SDC1-206ENST00000482879 EIF4G1Q04637 1599 aaKnown RBP22.37■■□□□ 1.17
SDC1-206ENST00000482879 BAZ1AQ9NRL2 1556 aaPredicted RBP22.32■■□□□ 1.16
SDC1-206ENST00000482879 SMARCA4P51532 1647 aa22.29■■□□□ 1.16
SDC1-206ENST00000482879 MROH2BQ7Z745 1585 aa22.25■■□□□ 1.15
SDC1-206ENST00000482879 CC2D2AQ9P2K1 1620 aa22.19■■□□□ 1.14
SDC1-206ENST00000482879 RSF1Q96T23 1441 aaPredicted RBP22.14■■□□□ 1.13
SDC1-206ENST00000482879 DNAJC5BQ9UF47 199 aa22.12■■□□□ 1.13
SDC1-206ENST00000482879 ATAD2BQ9ULI0 1458 aa22.06■■□□□ 1.12
SDC1-206ENST00000482879 WIZO95785 1651 aa22.05■■□□□ 1.12
SDC1-206ENST00000482879 SMARCA2P51531 1590 aa22.05■■□□□ 1.12
SDC1-206ENST00000482879 PEG3Q9GZU2 1588 aa22.04■■□□□ 1.12
SDC1-206ENST00000482879 SUPT5HO00267 1087 aaKnown RBP21.99■■□□□ 1.11
SDC1-206ENST00000482879 NCAPD3P42695 1498 aa21.96■■□□□ 1.11
SDC1-206ENST00000482879 BAZ1BQ9UIG0 1483 aaKnown RBP21.9■■□□□ 1.1
SDC1-206ENST00000482879 HMGXB3Q12766 1538 aa21.89■■□□□ 1.09
SDC1-206ENST00000482879 TOP2AP11388 1531 aaKnown RBP21.8■■□□□ 1.08
SDC1-206ENST00000482879 CCDC88BA6NC98 1476 aa21.57■■□□□ 1.04
SDC1-206ENST00000482879 CADPSQ9ULU8 1353 aa21.36■■□□□ 1.01
SDC1-206ENST00000482879 NESP48681 1621 aa21.34■■□□□ 1.01
SDC1-206ENST00000482879 LAMC3Q9Y6N6 1575 aa21.32■■□□□ 1
SDC1-206ENST00000482879 CFTRP13569 1480 aa21.32■■□□□ 1
SDC1-206ENST00000482879 PRDM2Q13029 1718 aa21.24■□□□□ 0.99
SDC1-206ENST00000482879 PDS5BQ9NTI5 1447 aa21.18■□□□□ 0.98
SDC1-206ENST00000482879 FANCD2Q9BXW9 1451 aa21.13■□□□□ 0.97
SDC1-206ENST00000482879 KIF21AQ7Z4S6 1674 aa21.12■□□□□ 0.97
SDC1-206ENST00000482879 ERCC6Q03468 1493 aa21.1■□□□□ 0.97
SDC1-206ENST00000482879 CEP164Q9UPV0 1460 aa21.06■□□□□ 0.96
SDC1-206ENST00000482879 MRC2Q9UBG0 1479 aa20.93■□□□□ 0.94
SDC1-206ENST00000482879 ABCC8Q09428 1581 aa20.92■□□□□ 0.94
SDC1-206ENST00000482879 THOC2Q8NI27 1593 aaKnown RBP20.89■□□□□ 0.94
SDC1-206ENST00000482879 URB2Q14146 1524 aaKnown RBP20.88■□□□□ 0.93
SDC1-206ENST00000482879 WRNQ14191 1432 aaPredicted RBP eCLIP20.87■□□□□ 0.93
SDC1-206ENST00000482879 DNMBPQ6XZF7 1577 aa20.85■□□□□ 0.93
SDC1-206ENST00000482879 CUX1P39880 1505 aa20.83■□□□□ 0.93
SDC1-206ENST00000482879 TOPBP1Q92547 1522 aa20.83■□□□□ 0.93
SDC1-206ENST00000482879 WDR62O43379 1518 aa20.83■□□□□ 0.92
SDC1-206ENST00000482879 SYNJ1O43426 1573 aa20.8■□□□□ 0.92
SDC1-206ENST00000482879 TOP2BQ02880 1626 aa20.77■□□□□ 0.92
SDC1-206ENST00000482879 BIVM-ERCC5R4GMW8 1640 aa20.77■□□□□ 0.92
SDC1-206ENST00000482879 CHIC1Q5VXU3 224 aa20.75■□□□□ 0.91
SDC1-206ENST00000482879 TRIM41Q8WV44 630 aa20.73■□□□□ 0.91
SDC1-206ENST00000482879 FGD5Q6ZNL6 1462 aa20.7■□□□□ 0.9
SDC1-206ENST00000482879 CUX2O14529 1486 aa20.69■□□□□ 0.9
SDC1-206ENST00000482879 POLA1P09884 1462 aaPredicted RBP20.69■□□□□ 0.9
SDC1-206ENST00000482879 SOGA1O94964 1423 aa20.63■□□□□ 0.89
SDC1-206ENST00000482879 RAD54L2Q9Y4B4 1467 aa20.61■□□□□ 0.89
SDC1-206ENST00000482879 IFT140Q96RY7 1462 aa20.59■□□□□ 0.89
SDC1-206ENST00000482879 TARBP1Q13395 1621 aaKnown RBP20.57■□□□□ 0.88
SDC1-206ENST00000482879 ABCA10Q8WWZ4 1543 aa20.51■□□□□ 0.87
SDC1-206ENST00000482879 WDR97A6NE52 1622 aa20.5■□□□□ 0.87
SDC1-206ENST00000482879 ZNF608Q9ULD9 1512 aaPredicted RBP20.48■□□□□ 0.87
SDC1-206ENST00000482879 TDRD9Q8NDG6 1382 aaKnown RBP20.46■□□□□ 0.87
SDC1-206ENST00000482879 AQRO60306 1485 aaKnown RBP eCLIP20.43■□□□□ 0.86
SDC1-206ENST00000482879 KIF27Q86VH2 1401 aa20.41■□□□□ 0.86
SDC1-206ENST00000482879 EIF4G3O43432 1585 aaKnown RBP20.4■□□□□ 0.86
SDC1-206ENST00000482879 ABCA5Q8WWZ7 1642 aa20.39■□□□□ 0.86
SDC1-206ENST00000482879 GAPVD1Q14C86 1478 aa20.39■□□□□ 0.85
SDC1-206ENST00000482879 RUSC2Q8N2Y8 1516 aa20.37■□□□□ 0.85
SDC1-206ENST00000482879 PBRM1Q86U86 1689 aa20.33■□□□□ 0.85
SDC1-206ENST00000482879 GRIN2BQ13224 1484 aa20.32■□□□□ 0.84
SDC1-206ENST00000482879 FAM9AQ8IZU1 332 aaPredicted RBP20.32■□□□□ 0.84
SDC1-206ENST00000482879 EEA1Q15075 1411 aa20.29■□□□□ 0.84
SDC1-206ENST00000482879 IGF1RP08069 1367 aa20.28■□□□□ 0.84
SDC1-206ENST00000482879 ERICH3Q5RHP9 1530 aa20.27■□□□□ 0.84
SDC1-206ENST00000482879 CSRNP3Q8WYN3 585 aa20.24■□□□□ 0.83
SDC1-206ENST00000482879 SNAPC4Q5SXM2 1469 aa20.23■□□□□ 0.83
SDC1-206ENST00000482879 MAGI1Q96QZ7 1491 aaPredicted RBP20.21■□□□□ 0.83
SDC1-206ENST00000482879 CUL7Q14999 1698 aa20.19■□□□□ 0.82
SDC1-206ENST00000482879 CARMIL1Q5VZK9 1371 aa20.18■□□□□ 0.82
SDC1-206ENST00000482879 ADAMTS12P58397 1594 aa20.17■□□□□ 0.82
SDC1-206ENST00000482879 FHAD1B1AJZ9 1412 aa20.16■□□□□ 0.82
SDC1-206ENST00000482879 FBLN2P98095 1184 aa20.14■□□□□ 0.81
SDC1-206ENST00000482879 CHMP7Q8WUX9 453 aaPredicted RBP20.13■□□□□ 0.81
SDC1-206ENST00000482879 SYNJ2O15056 1496 aa20.12■□□□□ 0.81
SDC1-206ENST00000482879 CHD1O14646 1710 aa20.1■□□□□ 0.81
SDC1-206ENST00000482879 PRXQ9BXM0 1461 aa20.1■□□□□ 0.81
SDC1-206ENST00000482879 RAPGEF2Q9Y4G8 1499 aa20.09■□□□□ 0.81
SDC1-206ENST00000482879 GRIN2AQ12879 1464 aa20.05■□□□□ 0.8
SDC1-206ENST00000482879 KIF21BO75037 1637 aa20.05■□□□□ 0.8
SDC1-206ENST00000482879 EHMT2Q96KQ7 1210 aa20.04■□□□□ 0.8
SDC1-206ENST00000482879 GOLGA3Q08378 1498 aa19.98■□□□□ 0.79
SDC1-206ENST00000482879 OSCARQ8IYS5 282 aa19.96■□□□□ 0.79
SDC1-206ENST00000482879 UBTFP17480 764 aaKnown RBP19.95■□□□□ 0.78
SDC1-206ENST00000482879 CEP170Q5SW79 1584 aa19.94■□□□□ 0.78
SDC1-206ENST00000482879 NUP160Q12769 1436 aa19.93■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 65.4 ms