RNA–Protein interactions for RNA: ENST00000482647.5

SEC13-217, Transcript of SEC13 homolog, nuclear pore and COPII coat complex component, humanhuman

TSL 2

Gene SEC13, Length 782 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEC13-217ENST00000482647 NISCHQ9Y2I1 1504 aa50.36■■■■■ 5.65
SEC13-217ENST00000482647 CCDC180Q9P1Z9 1646 aa44.61■■■■■ 4.73
SEC13-217ENST00000482647 ABCC9O60706 1549 aa43.64■■■■■ 4.58
SEC13-217ENST00000482647 DCAF8L2P0C7V8 631 aa42.19■■■■■ 4.34
SEC13-217ENST00000482647 NACADO15069 1562 aa42.01■■■■■ 4.32
SEC13-217ENST00000482647 RB1CC1Q8TDY2 1594 aa42.01■■■■■ 4.32
SEC13-217ENST00000482647 ZCCHC6Q5VYS8 1495 aaKnown RBP41.94■■■■■ 4.3
SEC13-217ENST00000482647 MYO15BQ96JP2 1530 aa41.8■■■■■ 4.28
SEC13-217ENST00000482647 DCAF1Q9Y4B6 1507 aa41.66■■■■■ 4.26
SEC13-217ENST00000482647 PABPN1Q86U42 306 aaKnown RBP eCLIP40.9■■■■■ 4.14
SEC13-217ENST00000482647 UNC13AQ9UPW8 1703 aa40.88■■■■■ 4.13
SEC13-217ENST00000482647 SCRIBQ14160 1630 aa40.75■■■■■ 4.11
SEC13-217ENST00000482647 BICRAQ9NZM4 1560 aa40.68■■■■■ 4.1
SEC13-217ENST00000482647 SHROOM4Q9ULL8 1493 aa40.33■■■■■ 4.05
SEC13-217ENST00000482647 DNAJC5BQ9UF47 199 aa40.01■■■■■ 4
SEC13-217ENST00000482647 EIF4G1Q04637 1599 aaKnown RBP39.63■■■■□ 3.94
SEC13-217ENST00000482647 CC2D2AQ9P2K1 1620 aa39.43■■■■□ 3.9
SEC13-217ENST00000482647 CECR2Q9BXF3 1484 aa39.23■■■■□ 3.87
SEC13-217ENST00000482647 BAZ1AQ9NRL2 1556 aaPredicted RBP39.01■■■■□ 3.84
SEC13-217ENST00000482647 SMARCA4P51532 1647 aa38.99■■■■□ 3.83
SEC13-217ENST00000482647 ATAD2BQ9ULI0 1458 aa38.83■■■■□ 3.81
SEC13-217ENST00000482647 NCAPD3P42695 1498 aa38.8■■■■□ 3.8
SEC13-217ENST00000482647 MROH2BQ7Z745 1585 aa38.79■■■■□ 3.8
SEC13-217ENST00000482647 SMARCA2P51531 1590 aa38.76■■■■□ 3.8
SEC13-217ENST00000482647 PEG3Q9GZU2 1588 aa38.61■■■■□ 3.77
SEC13-217ENST00000482647 HMGXB3Q12766 1538 aa38.54■■■■□ 3.76
SEC13-217ENST00000482647 BAZ1BQ9UIG0 1483 aaKnown RBP38.51■■■■□ 3.76
SEC13-217ENST00000482647 RSF1Q96T23 1441 aaPredicted RBP38.45■■■■□ 3.75
SEC13-217ENST00000482647 WIZO95785 1651 aa38.33■■■■□ 3.73
SEC13-217ENST00000482647 TOP2AP11388 1531 aaKnown RBP37.97■■■■□ 3.67
SEC13-217ENST00000482647 NESP48681 1621 aa37.78■■■■□ 3.64
SEC13-217ENST00000482647 CADPSQ9ULU8 1353 aa37.71■■■■□ 3.63
SEC13-217ENST00000482647 LAMC3Q9Y6N6 1575 aa37.69■■■■□ 3.62
SEC13-217ENST00000482647 SUPT5HO00267 1087 aaKnown RBP37.66■■■■□ 3.62
SEC13-217ENST00000482647 ERCC6Q03468 1493 aa37.64■■■■□ 3.62
SEC13-217ENST00000482647 CCDC88BA6NC98 1476 aa37.58■■■■□ 3.61
SEC13-217ENST00000482647 PDS5BQ9NTI5 1447 aa37.54■■■■□ 3.6
SEC13-217ENST00000482647 CFTRP13569 1480 aa37.47■■■■□ 3.59
SEC13-217ENST00000482647 FANCD2Q9BXW9 1451 aa37.23■■■■□ 3.55
SEC13-217ENST00000482647 KIF21AQ7Z4S6 1674 aa37.22■■■■□ 3.55
SEC13-217ENST00000482647 CUX2O14529 1486 aa37.17■■■■□ 3.54
SEC13-217ENST00000482647 CEP164Q9UPV0 1460 aa37.16■■■■□ 3.54
SEC13-217ENST00000482647 THOC2Q8NI27 1593 aaKnown RBP37.1■■■■□ 3.53
SEC13-217ENST00000482647 MRC2Q9UBG0 1479 aa37.08■■■■□ 3.53
SEC13-217ENST00000482647 PRDM2Q13029 1718 aa36.99■■■■□ 3.51
SEC13-217ENST00000482647 WDR62O43379 1518 aa36.92■■■■□ 3.5
SEC13-217ENST00000482647 URB2Q14146 1524 aaKnown RBP36.82■■■■□ 3.48
SEC13-217ENST00000482647 ABCC8Q09428 1581 aa36.69■■■■□ 3.46
SEC13-217ENST00000482647 TOPBP1Q92547 1522 aa36.63■■■■□ 3.45
SEC13-217ENST00000482647 DNMBPQ6XZF7 1577 aa36.57■■■■□ 3.44
SEC13-217ENST00000482647 IFT140Q96RY7 1462 aa36.4■■■■□ 3.42
SEC13-217ENST00000482647 CUX1P39880 1505 aa36.38■■■■□ 3.41
SEC13-217ENST00000482647 POLA1P09884 1462 aaPredicted RBP36.32■■■■□ 3.41
SEC13-217ENST00000482647 FGD5Q6ZNL6 1462 aa36.26■■■■□ 3.4
SEC13-217ENST00000482647 SOGA1O94964 1423 aa36.25■■■■□ 3.39
SEC13-217ENST00000482647 WRNQ14191 1432 aaPredicted RBP eCLIP36.25■■■■□ 3.39
SEC13-217ENST00000482647 ZNF608Q9ULD9 1512 aaPredicted RBP36.19■■■■□ 3.38
SEC13-217ENST00000482647 RAD54L2Q9Y4B4 1467 aa36.19■■■■□ 3.38
SEC13-217ENST00000482647 TARBP1Q13395 1621 aaKnown RBP36.16■■■■□ 3.38
SEC13-217ENST00000482647 TOP2BQ02880 1626 aa36.08■■■■□ 3.37
SEC13-217ENST00000482647 SYNJ1O43426 1573 aa36.06■■■■□ 3.36
SEC13-217ENST00000482647 AQRO60306 1485 aaKnown RBP eCLIP36.05■■■■□ 3.362e-9■■■■□ 20.5
SEC13-217ENST00000482647 TDRD9Q8NDG6 1382 aaKnown RBP36.03■■■■□ 3.36
SEC13-217ENST00000482647 BIVM-ERCC5R4GMW8 1640 aa36.03■■■■□ 3.36
SEC13-217ENST00000482647 EIF4G3O43432 1585 aaKnown RBP35.98■■■■□ 3.35
SEC13-217ENST00000482647 DNAJC5Q9H3Z4 198 aa35.98■■■■□ 3.35
SEC13-217ENST00000482647 ABCA10Q8WWZ4 1543 aa35.93■■■■□ 3.34
SEC13-217ENST00000482647 WDR97A6NE52 1622 aa35.9■■■■□ 3.34
SEC13-217ENST00000482647 GAPVD1Q14C86 1478 aa35.8■■■■□ 3.32
SEC13-217ENST00000482647 OSCARQ8IYS5 282 aa35.78■■■■□ 3.32
SEC13-217ENST00000482647 GRIN2BQ13224 1484 aa35.78■■■■□ 3.32
SEC13-217ENST00000482647 ABCA5Q8WWZ7 1642 aa35.69■■■■□ 3.3
SEC13-217ENST00000482647 SNAPC4Q5SXM2 1469 aa35.68■■■■□ 3.3
SEC13-217ENST00000482647 FBLN2P98095 1184 aa35.68■■■■□ 3.3
SEC13-217ENST00000482647 MAGI1Q96QZ7 1491 aaPredicted RBP35.66■■■■□ 3.3
SEC13-217ENST00000482647 CHMP7Q8WUX9 453 aaPredicted RBP35.61■■■■□ 3.29
SEC13-217ENST00000482647 TRIM41Q8WV44 630 aa35.59■■■■□ 3.29
SEC13-217ENST00000482647 PBRM1Q86U86 1689 aa35.56■■■■□ 3.28
SEC13-217ENST00000482647 KIF27Q86VH2 1401 aa35.52■■■■□ 3.28
SEC13-217ENST00000482647 SYNJ2O15056 1496 aa35.52■■■■□ 3.28
SEC13-217ENST00000482647 ERICH3Q5RHP9 1530 aa35.48■■■■□ 3.27
SEC13-217ENST00000482647 CHD1O14646 1710 aa35.46■■■■□ 3.27
SEC13-217ENST00000482647 FHAD1B1AJZ9 1412 aa35.4■■■■□ 3.26
SEC13-217ENST00000482647 IGF1RP08069 1367 aa35.38■■■■□ 3.25
SEC13-217ENST00000482647 ADAMTS12P58397 1594 aa35.35■■■■□ 3.25
SEC13-217ENST00000482647 GRIN2AQ12879 1464 aa35.29■■■■□ 3.24
SEC13-217ENST00000482647 CHIC1Q5VXU3 224 aa35.19■■■■□ 3.22
SEC13-217ENST00000482647 RUSC2Q8N2Y8 1516 aa35.16■■■■□ 3.22
SEC13-217ENST00000482647 CARMIL1Q5VZK9 1371 aa35.16■■■■□ 3.22
SEC13-217ENST00000482647 CLASP1Q7Z460 1538 aa35.15■■■■□ 3.22
SEC13-217ENST00000482647 CUL7Q14999 1698 aa35.14■■■■□ 3.22
SEC13-217ENST00000482647 NUP160Q12769 1436 aa35.14■■■■□ 3.22
SEC13-217ENST00000482647 CEP170Q5SW79 1584 aa35.05■■■■□ 3.2
SEC13-217ENST00000482647 ARHGEF11O15085 1522 aa35.05■■■■□ 3.2
SEC13-217ENST00000482647 RIMBP3CA6NJZ7 1639 aa34.99■■■■□ 3.19
SEC13-217ENST00000482647 RIMBP3BA6NNM3 1639 aa34.99■■■■□ 3.19
SEC13-217ENST00000482647 RIMBP3Q9UFD9 1639 aa34.99■■■■□ 3.19
SEC13-217ENST00000482647 RAPGEF2Q9Y4G8 1499 aa34.94■■■■□ 3.18
SEC13-217ENST00000482647 CSRNP3Q8WYN3 585 aa34.92■■■■□ 3.18
SEC13-217ENST00000482647 EEA1Q15075 1411 aa34.91■■■■□ 3.18
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms