RNA–Protein interactions for RNA: ENST00000481991.1

USP54-213, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 3

Gene USP54, Length 403 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-213ENST00000481991 NISCHQ9Y2I1 1504 aa19.38■□□□□ 0.69
USP54-213ENST00000481991 ABCC9O60706 1549 aa18.18■□□□□ 0.5
USP54-213ENST00000481991 DNAJC5BQ9UF47 199 aa17.5■□□□□ 0.39
USP54-213ENST00000481991 CCDC180Q9P1Z9 1646 aa17.43■□□□□ 0.38
USP54-213ENST00000481991 DCAF8L2P0C7V8 631 aa17.04■□□□□ 0.32
USP54-213ENST00000481991 PABPN1Q86U42 306 aaKnown RBP eCLIP17■□□□□ 0.31
USP54-213ENST00000481991 RB1CC1Q8TDY2 1594 aa16.95■□□□□ 0.3
USP54-213ENST00000481991 NACADO15069 1562 aa16.69■□□□□ 0.26
USP54-213ENST00000481991 UNC13AQ9UPW8 1703 aa16.46■□□□□ 0.23
USP54-213ENST00000481991 BICRAQ9NZM4 1560 aa16.4■□□□□ 0.22
USP54-213ENST00000481991 DNAJC5Q9H3Z4 198 aa16.38■□□□□ 0.21
USP54-213ENST00000481991 CECR2Q9BXF3 1484 aa16.37■□□□□ 0.21
USP54-213ENST00000481991 CC2D2AQ9P2K1 1620 aa16.27■□□□□ 0.2
USP54-213ENST00000481991 MYO15BQ96JP2 1530 aa16.2■□□□□ 0.18
USP54-213ENST00000481991 EIF4G1Q04637 1599 aaKnown RBP16.09■□□□□ 0.17
USP54-213ENST00000481991 SCRIBQ14160 1630 aa16.06■□□□□ 0.16
USP54-213ENST00000481991 SHROOM4Q9ULL8 1493 aa16.04■□□□□ 0.16
USP54-213ENST00000481991 ZCCHC6Q5VYS8 1495 aaKnown RBP15.9■□□□□ 0.14
USP54-213ENST00000481991 DCAF1Q9Y4B6 1507 aa15.85■□□□□ 0.13
USP54-213ENST00000481991 ERCC6Q03468 1493 aa15.75■□□□□ 0.11
USP54-213ENST00000481991 CUX2O14529 1486 aa15.71■□□□□ 0.1
USP54-213ENST00000481991 TRIM41Q8WV44 630 aa15.67■□□□□ 0.1
USP54-213ENST00000481991 NCAPD3P42695 1498 aa15.45■□□□□ 0.06
USP54-213ENST00000481991 NESP48681 1621 aa15.44■□□□□ 0.06
USP54-213ENST00000481991 ATAD2BQ9ULI0 1458 aa15.37■□□□□ 0.05
USP54-213ENST00000481991 SMARCA2P51531 1590 aa15.27■□□□□ 0.03
USP54-213ENST00000481991 BAZ1BQ9UIG0 1483 aaKnown RBP15.23■□□□□ 0.03
USP54-213ENST00000481991 HMGXB3Q12766 1538 aa15.21■□□□□ 0.03
USP54-213ENST00000481991 PDS5BQ9NTI5 1447 aa15.2■□□□□ 0.02
USP54-213ENST00000481991 THOC2Q8NI27 1593 aaKnown RBP15.19■□□□□ 0.02
USP54-213ENST00000481991 SMARCA4P51532 1647 aa15.17■□□□□ 0.02
USP54-213ENST00000481991 OSCARQ8IYS5 282 aa15.16■□□□□ 0.02
USP54-213ENST00000481991 LAMC3Q9Y6N6 1575 aa15.14■□□□□ 0.01
USP54-213ENST00000481991 KIF21AQ7Z4S6 1674 aa15.11■□□□□ 0.01
USP54-213ENST00000481991 BAZ1AQ9NRL2 1556 aaPredicted RBP15.07■□□□□ 0
USP54-213ENST00000481991 CADPSQ9ULU8 1353 aa15.05■□□□□ -0
USP54-213ENST00000481991 MRC2Q9UBG0 1479 aa15.03■□□□□ -0
USP54-213ENST00000481991 MROH2BQ7Z745 1585 aa14.97□□□□□ -0.01
USP54-213ENST00000481991 TRHP20396 242 aaPredicted RBP14.96□□□□□ -0.01
USP54-213ENST00000481991 PEG3Q9GZU2 1588 aa14.94□□□□□ -0.02
USP54-213ENST00000481991 WDR62O43379 1518 aa14.92□□□□□ -0.02
USP54-213ENST00000481991 CEP164Q9UPV0 1460 aa14.9□□□□□ -0.02
USP54-213ENST00000481991 CYB5RLQ6IPT4 315 aa14.9□□□□□ -0.02
USP54-213ENST00000481991 AEBP2Q6ZN18 517 aaPredicted RBP14.89□□□□□ -0.03
USP54-213ENST00000481991 FANCD2Q9BXW9 1451 aa14.87□□□□□ -0.03
USP54-213ENST00000481991 RIMBP3CA6NJZ7 1639 aa14.8□□□□□ -0.04
USP54-213ENST00000481991 RIMBP3BA6NNM3 1639 aa14.8□□□□□ -0.04
USP54-213ENST00000481991 RIMBP3Q9UFD9 1639 aa14.8□□□□□ -0.04
USP54-213ENST00000481991 WIZO95785 1651 aa14.77□□□□□ -0.05
USP54-213ENST00000481991 FBLN2P98095 1184 aa14.76□□□□□ -0.05
USP54-213ENST00000481991 URB2Q14146 1524 aaKnown RBP14.72□□□□□ -0.05
USP54-213ENST00000481991 ARHGEF11O15085 1522 aa14.71□□□□□ -0.05
USP54-213ENST00000481991 CFTRP13569 1480 aa14.69□□□□□ -0.06
USP54-213ENST00000481991 ZNF608Q9ULD9 1512 aaPredicted RBP14.66□□□□□ -0.06
USP54-213ENST00000481991 IFT140Q96RY7 1462 aa14.62□□□□□ -0.07
USP54-213ENST00000481991 AQRO60306 1485 aaKnown RBP eCLIP14.55□□□□□ -0.082e-6■■■□□ 15.2
USP54-213ENST00000481991 ARAP1Q96P48 1450 aa14.54□□□□□ -0.08
USP54-213ENST00000481991 RSF1Q96T23 1441 aaPredicted RBP14.52□□□□□ -0.08
USP54-213ENST00000481991 TOPBP1Q92547 1522 aa14.5□□□□□ -0.09
USP54-213ENST00000481991 CHMP7Q8WUX9 453 aaPredicted RBP14.49□□□□□ -0.09
USP54-213ENST00000481991 TOP2AP11388 1531 aaKnown RBP14.49□□□□□ -0.09
USP54-213ENST00000481991 EIF4G3O43432 1585 aaKnown RBP14.46□□□□□ -0.09
USP54-213ENST00000481991 CHD1O14646 1710 aa14.44□□□□□ -0.1
USP54-213ENST00000481991 CCDC88BA6NC98 1476 aa14.44□□□□□ -0.1
USP54-213ENST00000481991 TDRD9Q8NDG6 1382 aaKnown RBP14.43□□□□□ -0.1
USP54-213ENST00000481991 ABCC8Q09428 1581 aa14.43□□□□□ -0.1
USP54-213ENST00000481991 SOGA1O94964 1423 aa14.37□□□□□ -0.11
USP54-213ENST00000481991 RAD54L2Q9Y4B4 1467 aa14.37□□□□□ -0.11
USP54-213ENST00000481991 PRDM2Q13029 1718 aa14.36□□□□□ -0.11
USP54-213ENST00000481991 DNMBPQ6XZF7 1577 aa14.35□□□□□ -0.11
USP54-213ENST00000481991 TARBP1Q13395 1621 aaKnown RBP14.32□□□□□ -0.12
USP54-213ENST00000481991 SNAPC4Q5SXM2 1469 aa14.31□□□□□ -0.12
USP54-213ENST00000481991 POLA1P09884 1462 aaPredicted RBP14.31□□□□□ -0.12
USP54-213ENST00000481991 SYNJ1O43426 1573 aa14.26□□□□□ -0.13
USP54-213ENST00000481991 GAPVD1Q14C86 1478 aa14.25□□□□□ -0.13
USP54-213ENST00000481991 CLASP1Q7Z460 1538 aa14.23□□□□□ -0.13
USP54-213ENST00000481991 GRIN2BQ13224 1484 aa14.2□□□□□ -0.14
USP54-213ENST00000481991 MAGI1Q96QZ7 1491 aaPredicted RBP14.19□□□□□ -0.14
USP54-213ENST00000481991 SYNJ2O15056 1496 aa14.18□□□□□ -0.14
USP54-213ENST00000481991 FGD5Q6ZNL6 1462 aa14.18□□□□□ -0.14
USP54-213ENST00000481991 ILDR1Q86SU0 546 aaPredicted RBP14.15□□□□□ -0.14
USP54-213ENST00000481991 FAM69CQ0P6D2 419 aa14.13□□□□□ -0.15
USP54-213ENST00000481991 NPM1P06748 294 aaKnown RBP eCLIP14.12□□□□□ -0.15
USP54-213ENST00000481991 ERCC6L2Q5T890 1561 aa14.07□□□□□ -0.16
USP54-213ENST00000481991 CUX1P39880 1505 aa14.06□□□□□ -0.16
USP54-213ENST00000481991 WDR97A6NE52 1622 aa14.06□□□□□ -0.16
USP54-213ENST00000481991 KDM4FA0A1W2PPD8 638 aa14.05□□□□□ -0.16
USP54-213ENST00000481991 JPH4Q96JJ6 628 aa14.01□□□□□ -0.17
USP54-213ENST00000481991 PBRM1Q86U86 1689 aa14.01□□□□□ -0.17
USP54-213ENST00000481991 GRIN2AQ12879 1464 aa13.99□□□□□ -0.17
USP54-213ENST00000481991 CEP170Q5SW79 1584 aa13.98□□□□□ -0.17
USP54-213ENST00000481991 PRG4Q92954 1404 aaPredicted RBP13.98□□□□□ -0.17
USP54-213ENST00000481991 TTBK1Q5TCY1 1321 aaPredicted RBP13.97□□□□□ -0.17
USP54-213ENST00000481991 CHIC1Q5VXU3 224 aa13.97□□□□□ -0.17
USP54-213ENST00000481991 ABCA10Q8WWZ4 1543 aa13.95□□□□□ -0.18
USP54-213ENST00000481991 KIF13AQ9H1H9 1805 aa13.92□□□□□ -0.18
USP54-213ENST00000481991 NUP160Q12769 1436 aa13.91□□□□□ -0.18
USP54-213ENST00000481991 WRNQ14191 1432 aaPredicted RBP eCLIP13.91□□□□□ -0.18
USP54-213ENST00000481991 FHAD1B1AJZ9 1412 aa13.9□□□□□ -0.18
USP54-213ENST00000481991 ABCC10Q5T3U5 1492 aa13.9□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms