RNA–Protein interactions for RNA: ENST00000481910.1

HPS4-212, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 2

Gene HPS4, Length 1,914 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-212ENST00000481910 NISCHQ9Y2I1 1504 aa27.22■■□□□ 1.95
HPS4-212ENST00000481910 CCDC180Q9P1Z9 1646 aa23.98■■□□□ 1.43
HPS4-212ENST00000481910 ABCC9O60706 1549 aa23.16■■□□□ 1.3
HPS4-212ENST00000481910 ZCCHC6Q5VYS8 1495 aaKnown RBP22.74■■□□□ 1.23
HPS4-212ENST00000481910 DCAF8L2P0C7V8 631 aa22.71■■□□□ 1.23
HPS4-212ENST00000481910 DCAF1Q9Y4B6 1507 aa22.5■■□□□ 1.19
HPS4-212ENST00000481910 NACADO15069 1562 aa22.48■■□□□ 1.19
HPS4-212ENST00000481910 MYO15BQ96JP2 1530 aa22.44■■□□□ 1.18
HPS4-212ENST00000481910 RB1CC1Q8TDY2 1594 aa22.42■■□□□ 1.18
HPS4-212ENST00000481910 SCRIBQ14160 1630 aa21.97■■□□□ 1.11
HPS4-212ENST00000481910 UNC13AQ9UPW8 1703 aa21.92■■□□□ 1.1
HPS4-212ENST00000481910 SHROOM4Q9ULL8 1493 aa21.83■■□□□ 1.09
HPS4-212ENST00000481910 PABPN1Q86U42 306 aaKnown RBP eCLIP21.75■■□□□ 1.07
HPS4-212ENST00000481910 BICRAQ9NZM4 1560 aa21.71■■□□□ 1.07
HPS4-212ENST00000481910 CECR2Q9BXF3 1484 aa21.18■□□□□ 0.98
HPS4-212ENST00000481910 EIF4G1Q04637 1599 aaKnown RBP21.11■□□□□ 0.97
HPS4-212ENST00000481910 BAZ1AQ9NRL2 1556 aaPredicted RBP21.07■□□□□ 0.96
HPS4-212ENST00000481910 SMARCA4P51532 1647 aa21.03■□□□□ 0.96
HPS4-212ENST00000481910 MROH2BQ7Z745 1585 aa21■□□□□ 0.95
HPS4-212ENST00000481910 CC2D2AQ9P2K1 1620 aa20.94■□□□□ 0.94
HPS4-212ENST00000481910 DNAJC5BQ9UF47 199 aa20.91■□□□□ 0.94
HPS4-212ENST00000481910 RSF1Q96T23 1441 aaPredicted RBP20.91■□□□□ 0.94
HPS4-212ENST00000481910 ATAD2BQ9ULI0 1458 aa20.82■□□□□ 0.92
HPS4-212ENST00000481910 SMARCA2P51531 1590 aa20.81■□□□□ 0.92
HPS4-212ENST00000481910 WIZO95785 1651 aa20.8■□□□□ 0.92
HPS4-212ENST00000481910 PEG3Q9GZU2 1588 aa20.79■□□□□ 0.92
HPS4-212ENST00000481910 SUPT5HO00267 1087 aaKnown RBP20.77■□□□□ 0.92
HPS4-212ENST00000481910 NCAPD3P42695 1498 aa20.75■□□□□ 0.91
HPS4-212ENST00000481910 BAZ1BQ9UIG0 1483 aaKnown RBP20.69■□□□□ 0.9
HPS4-212ENST00000481910 HMGXB3Q12766 1538 aa20.66■□□□□ 0.9
HPS4-212ENST00000481910 TOP2AP11388 1531 aaKnown RBP20.57■□□□□ 0.88
HPS4-212ENST00000481910 CHIC1Q5VXU3 224 aa20.55■□□□□ 0.88
HPS4-212ENST00000481910 CCDC88BA6NC98 1476 aa20.36■□□□□ 0.85
HPS4-212ENST00000481910 CADPSQ9ULU8 1353 aa20.18■□□□□ 0.82
HPS4-212ENST00000481910 NESP48681 1621 aa20.15■□□□□ 0.82
HPS4-212ENST00000481910 CFTRP13569 1480 aa20.13■□□□□ 0.81
HPS4-212ENST00000481910 LAMC3Q9Y6N6 1575 aa20.13■□□□□ 0.81
HPS4-212ENST00000481910 PDS5BQ9NTI5 1447 aa20■□□□□ 0.79
HPS4-212ENST00000481910 PRDM2Q13029 1718 aa19.99■□□□□ 0.79
HPS4-212ENST00000481910 FANCD2Q9BXW9 1451 aa19.95■□□□□ 0.78
HPS4-212ENST00000481910 ERCC6Q03468 1493 aa19.94■□□□□ 0.78
HPS4-212ENST00000481910 KIF21AQ7Z4S6 1674 aa19.91■□□□□ 0.78
HPS4-212ENST00000481910 CEP164Q9UPV0 1460 aa19.88■□□□□ 0.77
HPS4-212ENST00000481910 MRC2Q9UBG0 1479 aa19.76■□□□□ 0.75
HPS4-212ENST00000481910 ABCC8Q09428 1581 aa19.75■□□□□ 0.75
HPS4-212ENST00000481910 URB2Q14146 1524 aaKnown RBP19.71■□□□□ 0.75
HPS4-212ENST00000481910 WRNQ14191 1432 aaPredicted RBP eCLIP19.71■□□□□ 0.75
HPS4-212ENST00000481910 THOC2Q8NI27 1593 aaKnown RBP19.71■□□□□ 0.75
HPS4-212ENST00000481910 TOPBP1Q92547 1522 aa19.67■□□□□ 0.74
HPS4-212ENST00000481910 WDR62O43379 1518 aa19.66■□□□□ 0.74
HPS4-212ENST00000481910 CUX1P39880 1505 aa19.66■□□□□ 0.74
HPS4-212ENST00000481910 DNMBPQ6XZF7 1577 aa19.66■□□□□ 0.74
HPS4-212ENST00000481910 SYNJ1O43426 1573 aa19.62■□□□□ 0.73
HPS4-212ENST00000481910 TOP2BQ02880 1626 aa19.6■□□□□ 0.73
HPS4-212ENST00000481910 TRIM41Q8WV44 630 aa19.58■□□□□ 0.72
HPS4-212ENST00000481910 BIVM-ERCC5R4GMW8 1640 aa19.58■□□□□ 0.72
HPS4-212ENST00000481910 FGD5Q6ZNL6 1462 aa19.55■□□□□ 0.72
HPS4-212ENST00000481910 CUX2O14529 1486 aa19.53■□□□□ 0.72
HPS4-212ENST00000481910 POLA1P09884 1462 aaPredicted RBP19.53■□□□□ 0.72
HPS4-212ENST00000481910 AEBP2Q6ZN18 517 aaPredicted RBP19.51■□□□□ 0.71
HPS4-212ENST00000481910 SOGA1O94964 1423 aa19.48■□□□□ 0.71
HPS4-212ENST00000481910 RAD54L2Q9Y4B4 1467 aa19.46■□□□□ 0.71
HPS4-212ENST00000481910 IFT140Q96RY7 1462 aa19.44■□□□□ 0.7
HPS4-212ENST00000481910 TARBP1Q13395 1621 aaKnown RBP19.4■□□□□ 0.7
HPS4-212ENST00000481910 ABCA10Q8WWZ4 1543 aa19.36■□□□□ 0.69
HPS4-212ENST00000481910 TDRD9Q8NDG6 1382 aaKnown RBP19.34■□□□□ 0.69
HPS4-212ENST00000481910 ZNF608Q9ULD9 1512 aaPredicted RBP19.33■□□□□ 0.69
HPS4-212ENST00000481910 WDR97A6NE52 1622 aa19.33■□□□□ 0.68
HPS4-212ENST00000481910 AQRO60306 1485 aaKnown RBP eCLIP19.3■□□□□ 0.685e-9■■■■□ 19.8
HPS4-212ENST00000481910 KIF27Q86VH2 1401 aa19.27■□□□□ 0.67
HPS4-212ENST00000481910 EIF4G3O43432 1585 aaKnown RBP19.25■□□□□ 0.67
HPS4-212ENST00000481910 GAPVD1Q14C86 1478 aa19.25■□□□□ 0.67
HPS4-212ENST00000481910 ABCA5Q8WWZ7 1642 aa19.23■□□□□ 0.67
HPS4-212ENST00000481910 RUSC2Q8N2Y8 1516 aa19.23■□□□□ 0.67
HPS4-212ENST00000481910 FAM9AQ8IZU1 332 aaPredicted RBP19.19■□□□□ 0.66
HPS4-212ENST00000481910 GRIN2BQ13224 1484 aa19.18■□□□□ 0.66
HPS4-212ENST00000481910 PBRM1Q86U86 1689 aa19.16■□□□□ 0.66
HPS4-212ENST00000481910 EEA1Q15075 1411 aa19.15■□□□□ 0.66
HPS4-212ENST00000481910 IGF1RP08069 1367 aa19.14■□□□□ 0.66
HPS4-212ENST00000481910 ERICH3Q5RHP9 1530 aa19.13■□□□□ 0.65
HPS4-212ENST00000481910 CSRNP3Q8WYN3 585 aa19.12■□□□□ 0.65
HPS4-212ENST00000481910 SNAPC4Q5SXM2 1469 aa19.1■□□□□ 0.65
HPS4-212ENST00000481910 MAGI1Q96QZ7 1491 aaPredicted RBP19.08■□□□□ 0.64
HPS4-212ENST00000481910 FBLN2P98095 1184 aa19.05■□□□□ 0.64
HPS4-212ENST00000481910 CARMIL1Q5VZK9 1371 aa19.05■□□□□ 0.64
HPS4-212ENST00000481910 MYT1Q01538 1121 aa19.04■□□□□ 0.64
HPS4-212ENST00000481910 FHAD1B1AJZ9 1412 aa19.03■□□□□ 0.64
HPS4-212ENST00000481910 CUL7Q14999 1698 aa19.03■□□□□ 0.64
HPS4-212ENST00000481910 CHMP7Q8WUX9 453 aaPredicted RBP19.03■□□□□ 0.64
HPS4-212ENST00000481910 ADAMTS12P58397 1594 aa19.02■□□□□ 0.64
HPS4-212ENST00000481910 SYNJ2O15056 1496 aa19.01■□□□□ 0.63
HPS4-212ENST00000481910 PELP1Q8IZL8 1130 aaKnown RBP18.98■□□□□ 0.63
HPS4-212ENST00000481910 PRXQ9BXM0 1461 aa18.97■□□□□ 0.63
HPS4-212ENST00000481910 RAPGEF2Q9Y4G8 1499 aa18.97■□□□□ 0.63
HPS4-212ENST00000481910 CHD1O14646 1710 aa18.95■□□□□ 0.62
HPS4-212ENST00000481910 GRIN2AQ12879 1464 aa18.94■□□□□ 0.62
HPS4-212ENST00000481910 EHMT2Q96KQ7 1210 aa18.94■□□□□ 0.62
HPS4-212ENST00000481910 KIF21BO75037 1637 aa18.91■□□□□ 0.62
HPS4-212ENST00000481910 OSCARQ8IYS5 282 aa18.87■□□□□ 0.61
HPS4-212ENST00000481910 GOLGA3Q08378 1498 aa18.85■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 192.8 ms