RNA–Protein interactions for RNA: ENST00000481492.1

PTPN18-211, Transcript of protein tyrosine phosphatase, non-receptor type 18, humanhuman

TSL 2

Gene PTPN18, Length 1,394 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN18-211ENST00000481492 NISCHQ9Y2I1 1504 aa50.44■■■■■ 5.66
PTPN18-211ENST00000481492 CCDC180Q9P1Z9 1646 aa44.79■■■■■ 4.76
PTPN18-211ENST00000481492 ABCC9O60706 1549 aa44.19■■■■■ 4.66
PTPN18-211ENST00000481492 RB1CC1Q8TDY2 1594 aa42.29■■■■■ 4.36
PTPN18-211ENST00000481492 DCAF8L2P0C7V8 631 aa42.27■■■■■ 4.36
PTPN18-211ENST00000481492 NACADO15069 1562 aa42.22■■■■■ 4.35
PTPN18-211ENST00000481492 ZCCHC6Q5VYS8 1495 aaKnown RBP41.95■■■■■ 4.31
PTPN18-211ENST00000481492 MYO15BQ96JP2 1530 aa41.9■■■■■ 4.3
PTPN18-211ENST00000481492 DNAJC5BQ9UF47 199 aa41.87■■■■■ 4.29
PTPN18-211ENST00000481492 DCAF1Q9Y4B6 1507 aa41.66■■■■■ 4.26
PTPN18-211ENST00000481492 UNC13AQ9UPW8 1703 aa41.36■■■■■ 4.21
PTPN18-211ENST00000481492 PABPN1Q86U42 306 aaKnown RBP eCLIP41.35■■■■■ 4.212e-6■■□□□ 13.9
PTPN18-211ENST00000481492 BICRAQ9NZM4 1560 aa41.16■■■■■ 4.18
PTPN18-211ENST00000481492 SCRIBQ14160 1630 aa40.94■■■■■ 4.14
PTPN18-211ENST00000481492 SHROOM4Q9ULL8 1493 aa40.53■■■■■ 4.08
PTPN18-211ENST00000481492 EIF4G1Q04637 1599 aaKnown RBP40.02■■■■■ 4
PTPN18-211ENST00000481492 CC2D2AQ9P2K1 1620 aa39.91■■■■□ 3.98
PTPN18-211ENST00000481492 CECR2Q9BXF3 1484 aa39.69■■■■□ 3.94
PTPN18-211ENST00000481492 SMARCA4P51532 1647 aa39.14■■■■□ 3.86
PTPN18-211ENST00000481492 NCAPD3P42695 1498 aa39.04■■■■□ 3.84
PTPN18-211ENST00000481492 ATAD2BQ9ULI0 1458 aa39.04■■■■□ 3.84
PTPN18-211ENST00000481492 BAZ1AQ9NRL2 1556 aaPredicted RBP39.03■■■■□ 3.84
PTPN18-211ENST00000481492 MROH2BQ7Z745 1585 aa38.92■■■■□ 3.82
PTPN18-211ENST00000481492 SMARCA2P51531 1590 aa38.88■■■■□ 3.81
PTPN18-211ENST00000481492 PEG3Q9GZU2 1588 aa38.76■■■■□ 3.79
PTPN18-211ENST00000481492 HMGXB3Q12766 1538 aa38.74■■■■□ 3.79
PTPN18-211ENST00000481492 DNAJC5Q9H3Z4 198 aa38.7■■■■□ 3.79
PTPN18-211ENST00000481492 BAZ1BQ9UIG0 1483 aaKnown RBP38.63■■■■□ 3.78
PTPN18-211ENST00000481492 WIZO95785 1651 aa38.44■■■■□ 3.74
PTPN18-211ENST00000481492 RSF1Q96T23 1441 aaPredicted RBP38.41■■■■□ 3.74
PTPN18-211ENST00000481492 NESP48681 1621 aa38.22■■■■□ 3.71
PTPN18-211ENST00000481492 ERCC6Q03468 1493 aa37.99■■■■□ 3.67
PTPN18-211ENST00000481492 TOP2AP11388 1531 aaKnown RBP37.97■■■■□ 3.67
PTPN18-211ENST00000481492 LAMC3Q9Y6N6 1575 aa37.95■■■■□ 3.66
PTPN18-211ENST00000481492 CADPSQ9ULU8 1353 aa37.9■■■■□ 3.66
PTPN18-211ENST00000481492 CUX2O14529 1486 aa37.84■■■■□ 3.65
PTPN18-211ENST00000481492 PDS5BQ9NTI5 1447 aa37.72■■■■□ 3.63
PTPN18-211ENST00000481492 KIF21AQ7Z4S6 1674 aa37.64■■■■□ 3.62
PTPN18-211ENST00000481492 CFTRP13569 1480 aa37.62■■■■□ 3.61
PTPN18-211ENST00000481492 CCDC88BA6NC98 1476 aa37.62■■■■□ 3.61
PTPN18-211ENST00000481492 THOC2Q8NI27 1593 aaKnown RBP37.58■■■■□ 3.61
PTPN18-211ENST00000481492 FANCD2Q9BXW9 1451 aa37.43■■■■□ 3.58
PTPN18-211ENST00000481492 MRC2Q9UBG0 1479 aa37.37■■■■□ 3.57
PTPN18-211ENST00000481492 CEP164Q9UPV0 1460 aa37.36■■■■□ 3.57
PTPN18-211ENST00000481492 SUPT5HO00267 1087 aaKnown RBP37.29■■■■□ 3.56
PTPN18-211ENST00000481492 WDR62O43379 1518 aa37.24■■■■□ 3.55
PTPN18-211ENST00000481492 PRDM2Q13029 1718 aa37.13■■■■□ 3.53
PTPN18-211ENST00000481492 URB2Q14146 1524 aaKnown RBP37.12■■■■□ 3.53
PTPN18-211ENST00000481492 TOPBP1Q92547 1522 aa36.82■■■■□ 3.48
PTPN18-211ENST00000481492 TRIM41Q8WV44 630 aa36.74■■■■□ 3.47
PTPN18-211ENST00000481492 ABCC8Q09428 1581 aa36.71■■■■□ 3.47
PTPN18-211ENST00000481492 DNMBPQ6XZF7 1577 aa36.7■■■■□ 3.47
PTPN18-211ENST00000481492 IFT140Q96RY7 1462 aa36.6■■■■□ 3.45
PTPN18-211ENST00000481492 ZNF608Q9ULD9 1512 aaPredicted RBP36.55■■■■□ 3.44
PTPN18-211ENST00000481492 POLA1P09884 1462 aaPredicted RBP36.5■■■■□ 3.43
PTPN18-211ENST00000481492 CUX1P39880 1505 aa36.5■■■■□ 3.43
PTPN18-211ENST00000481492 TARBP1Q13395 1621 aaKnown RBP36.44■■■■□ 3.42
PTPN18-211ENST00000481492 RAD54L2Q9Y4B4 1467 aa36.4■■■■□ 3.42
PTPN18-211ENST00000481492 FGD5Q6ZNL6 1462 aa36.37■■■■□ 3.41
PTPN18-211ENST00000481492 SOGA1O94964 1423 aa36.36■■■■□ 3.41
PTPN18-211ENST00000481492 AQRO60306 1485 aaKnown RBP eCLIP36.33■■■■□ 3.41
PTPN18-211ENST00000481492 EIF4G3O43432 1585 aaKnown RBP36.28■■■■□ 3.4
PTPN18-211ENST00000481492 TDRD9Q8NDG6 1382 aaKnown RBP36.23■■■■□ 3.39
PTPN18-211ENST00000481492 OSCARQ8IYS5 282 aa36.17■■■■□ 3.38
PTPN18-211ENST00000481492 WRNQ14191 1432 aaPredicted RBP eCLIP36.15■■■■□ 3.38
PTPN18-211ENST00000481492 SYNJ1O43426 1573 aa36.09■■■■□ 3.37
PTPN18-211ENST00000481492 TOP2BQ02880 1626 aa36.06■■■■□ 3.36
PTPN18-211ENST00000481492 BIVM-ERCC5R4GMW8 1640 aa36.04■■■■□ 3.36
PTPN18-211ENST00000481492 WDR97A6NE52 1622 aa36.01■■■■□ 3.36
PTPN18-211ENST00000481492 ABCA10Q8WWZ4 1543 aa36■■■■□ 3.35
PTPN18-211ENST00000481492 GRIN2BQ13224 1484 aa35.92■■■■□ 3.34
PTPN18-211ENST00000481492 GAPVD1Q14C86 1478 aa35.91■■■■□ 3.34
PTPN18-211ENST00000481492 SNAPC4Q5SXM2 1469 aa35.91■■■■□ 3.34
PTPN18-211ENST00000481492 FBLN2P98095 1184 aa35.89■■■■□ 3.34
PTPN18-211ENST00000481492 ABCA5Q8WWZ7 1642 aa35.85■■■■□ 3.33
PTPN18-211ENST00000481492 CHD1O14646 1710 aa35.85■■■■□ 3.33
PTPN18-211ENST00000481492 MAGI1Q96QZ7 1491 aaPredicted RBP35.8■■■■□ 3.32
PTPN18-211ENST00000481492 RIMBP3CA6NJZ7 1639 aa35.78■■■■□ 3.32
PTPN18-211ENST00000481492 RIMBP3BA6NNM3 1639 aa35.78■■■■□ 3.32
PTPN18-211ENST00000481492 RIMBP3Q9UFD9 1639 aa35.78■■■■□ 3.32
PTPN18-211ENST00000481492 PBRM1Q86U86 1689 aa35.74■■■■□ 3.31
PTPN18-211ENST00000481492 CHMP7Q8WUX9 453 aaPredicted RBP35.74■■■■□ 3.31
PTPN18-211ENST00000481492 SYNJ2O15056 1496 aa35.69■■■■□ 3.3
PTPN18-211ENST00000481492 ARHGEF11O15085 1522 aa35.55■■■■□ 3.28
PTPN18-211ENST00000481492 ERICH3Q5RHP9 1530 aa35.52■■■■□ 3.28
PTPN18-211ENST00000481492 CLASP1Q7Z460 1538 aa35.51■■■■□ 3.28
PTPN18-211ENST00000481492 ADAMTS12P58397 1594 aa35.51■■■■□ 3.27
PTPN18-211ENST00000481492 FHAD1B1AJZ9 1412 aa35.48■■■■□ 3.27
PTPN18-211ENST00000481492 GRIN2AQ12879 1464 aa35.46■■■■□ 3.27
PTPN18-211ENST00000481492 IGF1RP08069 1367 aa35.39■■■■□ 3.26
PTPN18-211ENST00000481492 KIF27Q86VH2 1401 aa35.39■■■■□ 3.26
PTPN18-211ENST00000481492 NUP160Q12769 1436 aa35.34■■■■□ 3.25
PTPN18-211ENST00000481492 CEP170Q5SW79 1584 aa35.31■■■■□ 3.24
PTPN18-211ENST00000481492 CYB5RLQ6IPT4 315 aa35.31■■■■□ 3.24
PTPN18-211ENST00000481492 ARAP1Q96P48 1450 aa35.28■■■■□ 3.24
PTPN18-211ENST00000481492 RUSC2Q8N2Y8 1516 aa35.16■■■■□ 3.22
PTPN18-211ENST00000481492 CARMIL1Q5VZK9 1371 aa35.12■■■■□ 3.21
PTPN18-211ENST00000481492 CUL7Q14999 1698 aa35.09■■■■□ 3.21
PTPN18-211ENST00000481492 ERCC6L2Q5T890 1561 aa35.09■■■■□ 3.21
PTPN18-211ENST00000481492 TRHP20396 242 aaPredicted RBP35.05■■■■□ 3.2
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms