RNA–Protein interactions for RNA: ENST00000479168.5

LIMS3-202, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 2

Gene LIMS3, Length 626 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-202ENST00000479168 NISCHQ9Y2I1 1504 aa35.21■■■■□ 3.23
LIMS3-202ENST00000479168 CCDC180Q9P1Z9 1646 aa31.27■■■□□ 2.6
LIMS3-202ENST00000479168 ABCC9O60706 1549 aa30.39■■■□□ 2.46
LIMS3-202ENST00000479168 NACADO15069 1562 aa29.42■■■□□ 2.3
LIMS3-202ENST00000479168 RB1CC1Q8TDY2 1594 aa29.4■■■□□ 2.3
LIMS3-202ENST00000479168 ZCCHC6Q5VYS8 1495 aaKnown RBP29.39■■■□□ 2.3
LIMS3-202ENST00000479168 MYO15BQ96JP2 1530 aa29.35■■■□□ 2.29
LIMS3-202ENST00000479168 DCAF8L2P0C7V8 631 aa29.29■■■□□ 2.28
LIMS3-202ENST00000479168 DCAF1Q9Y4B6 1507 aa29.24■■■□□ 2.27
LIMS3-202ENST00000479168 UNC13AQ9UPW8 1703 aa28.48■■■□□ 2.15
LIMS3-202ENST00000479168 SCRIBQ14160 1630 aa28.46■■■□□ 2.15
LIMS3-202ENST00000479168 PABPN1Q86U42 306 aaKnown RBP eCLIP28.38■■■□□ 2.13
LIMS3-202ENST00000479168 SHROOM4Q9ULL8 1493 aa28.38■■■□□ 2.13
LIMS3-202ENST00000479168 BICRAQ9NZM4 1560 aa28.37■■■□□ 2.13
LIMS3-202ENST00000479168 EIF4G1Q04637 1599 aaKnown RBP27.69■■■□□ 2.02
LIMS3-202ENST00000479168 DNAJC5BQ9UF47 199 aa27.65■■■□□ 2.02
LIMS3-202ENST00000479168 CC2D2AQ9P2K1 1620 aa27.5■■□□□ 1.99
LIMS3-202ENST00000479168 CECR2Q9BXF3 1484 aa27.36■■□□□ 1.97
LIMS3-202ENST00000479168 BAZ1AQ9NRL2 1556 aaPredicted RBP27.35■■□□□ 1.97
LIMS3-202ENST00000479168 SMARCA4P51532 1647 aa27.27■■□□□ 1.96
LIMS3-202ENST00000479168 SMARCA2P51531 1590 aa27.17■■□□□ 1.94
LIMS3-202ENST00000479168 NCAPD3P42695 1498 aa27.13■■□□□ 1.93
LIMS3-202ENST00000479168 ATAD2BQ9ULI0 1458 aa27.12■■□□□ 1.93
LIMS3-202ENST00000479168 MROH2BQ7Z745 1585 aa27.06■■□□□ 1.92
LIMS3-202ENST00000479168 PEG3Q9GZU2 1588 aa27.06■■□□□ 1.92
LIMS3-202ENST00000479168 HMGXB3Q12766 1538 aa27.03■■□□□ 1.92
LIMS3-202ENST00000479168 BAZ1BQ9UIG0 1483 aaKnown RBP26.94■■□□□ 1.9
LIMS3-202ENST00000479168 RSF1Q96T23 1441 aaPredicted RBP26.85■■□□□ 1.89
LIMS3-202ENST00000479168 WIZO95785 1651 aa26.73■■□□□ 1.87
LIMS3-202ENST00000479168 TOP2AP11388 1531 aaKnown RBP26.6■■□□□ 1.85
LIMS3-202ENST00000479168 LAMC3Q9Y6N6 1575 aa26.39■■□□□ 1.82
LIMS3-202ENST00000479168 CADPSQ9ULU8 1353 aa26.33■■□□□ 1.81
LIMS3-202ENST00000479168 ERCC6Q03468 1493 aa26.3■■□□□ 1.8
LIMS3-202ENST00000479168 NESP48681 1621 aa26.28■■□□□ 1.8
LIMS3-202ENST00000479168 PDS5BQ9NTI5 1447 aa26.26■■□□□ 1.79
LIMS3-202ENST00000479168 CCDC88BA6NC98 1476 aa26.22■■□□□ 1.79
LIMS3-202ENST00000479168 SUPT5HO00267 1087 aaKnown RBP26.21■■□□□ 1.79
LIMS3-202ENST00000479168 CFTRP13569 1480 aa26.2■■□□□ 1.78
LIMS3-202ENST00000479168 FANCD2Q9BXW9 1451 aa26.03■■□□□ 1.76
LIMS3-202ENST00000479168 CUX2O14529 1486 aa26.02■■□□□ 1.76
LIMS3-202ENST00000479168 CEP164Q9UPV0 1460 aa26.02■■□□□ 1.76
LIMS3-202ENST00000479168 KIF21AQ7Z4S6 1674 aa25.96■■□□□ 1.75
LIMS3-202ENST00000479168 MRC2Q9UBG0 1479 aa25.94■■□□□ 1.74
LIMS3-202ENST00000479168 THOC2Q8NI27 1593 aaKnown RBP25.93■■□□□ 1.74
LIMS3-202ENST00000479168 PRDM2Q13029 1718 aa25.91■■□□□ 1.74
LIMS3-202ENST00000479168 WDR62O43379 1518 aa25.83■■□□□ 1.72
LIMS3-202ENST00000479168 ABCC8Q09428 1581 aa25.73■■□□□ 1.71
LIMS3-202ENST00000479168 URB2Q14146 1524 aaKnown RBP25.69■■□□□ 1.7
LIMS3-202ENST00000479168 DNMBPQ6XZF7 1577 aa25.6■■□□□ 1.69
LIMS3-202ENST00000479168 TOPBP1Q92547 1522 aa25.59■■□□□ 1.69
LIMS3-202ENST00000479168 IFT140Q96RY7 1462 aa25.48■■□□□ 1.67
LIMS3-202ENST00000479168 CUX1P39880 1505 aa25.41■■□□□ 1.66
LIMS3-202ENST00000479168 POLA1P09884 1462 aaPredicted RBP25.39■■□□□ 1.65
LIMS3-202ENST00000479168 WRNQ14191 1432 aaPredicted RBP eCLIP25.37■■□□□ 1.65
LIMS3-202ENST00000479168 FGD5Q6ZNL6 1462 aa25.34■■□□□ 1.65
LIMS3-202ENST00000479168 SOGA1O94964 1423 aa25.3■■□□□ 1.64
LIMS3-202ENST00000479168 TOP2BQ02880 1626 aa25.26■■□□□ 1.63
LIMS3-202ENST00000479168 TARBP1Q13395 1621 aaKnown RBP25.26■■□□□ 1.63
LIMS3-202ENST00000479168 WDR97A6NE52 1622 aa25.24■■□□□ 1.63
LIMS3-202ENST00000479168 BIVM-ERCC5R4GMW8 1640 aa25.23■■□□□ 1.63
LIMS3-202ENST00000479168 ZNF608Q9ULD9 1512 aaPredicted RBP25.21■■□□□ 1.63
LIMS3-202ENST00000479168 SYNJ1O43426 1573 aa25.2■■□□□ 1.62
LIMS3-202ENST00000479168 RAD54L2Q9Y4B4 1467 aa25.2■■□□□ 1.62
LIMS3-202ENST00000479168 EIF4G3O43432 1585 aaKnown RBP25.17■■□□□ 1.62
LIMS3-202ENST00000479168 ABCA10Q8WWZ4 1543 aa25.15■■□□□ 1.62
LIMS3-202ENST00000479168 AQRO60306 1485 aaKnown RBP eCLIP25.09■■□□□ 1.61
LIMS3-202ENST00000479168 TDRD9Q8NDG6 1382 aaKnown RBP25.08■■□□□ 1.61
LIMS3-202ENST00000479168 GRIN2BQ13224 1484 aa25.04■■□□□ 1.6
LIMS3-202ENST00000479168 GAPVD1Q14C86 1478 aa25.02■■□□□ 1.6
LIMS3-202ENST00000479168 ABCA5Q8WWZ7 1642 aa24.98■■□□□ 1.59
LIMS3-202ENST00000479168 MAGI1Q96QZ7 1491 aaPredicted RBP24.98■■□□□ 1.59
LIMS3-202ENST00000479168 DNAJC5Q9H3Z4 198 aa24.96■■□□□ 1.59
LIMS3-202ENST00000479168 SNAPC4Q5SXM2 1469 aa24.93■■□□□ 1.58
LIMS3-202ENST00000479168 OSCARQ8IYS5 282 aa24.9■■□□□ 1.58
LIMS3-202ENST00000479168 KIF27Q86VH2 1401 aa24.87■■□□□ 1.57
LIMS3-202ENST00000479168 ERICH3Q5RHP9 1530 aa24.87■■□□□ 1.57
LIMS3-202ENST00000479168 PBRM1Q86U86 1689 aa24.86■■□□□ 1.57
LIMS3-202ENST00000479168 SYNJ2O15056 1496 aa24.86■■□□□ 1.57
LIMS3-202ENST00000479168 TRIM41Q8WV44 630 aa24.84■■□□□ 1.57
LIMS3-202ENST00000479168 CHMP7Q8WUX9 453 aaPredicted RBP24.82■■□□□ 1.56
LIMS3-202ENST00000479168 FBLN2P98095 1184 aa24.81■■□□□ 1.56
LIMS3-202ENST00000479168 FHAD1B1AJZ9 1412 aa24.78■■□□□ 1.56
LIMS3-202ENST00000479168 ADAMTS12P58397 1594 aa24.76■■□□□ 1.55
LIMS3-202ENST00000479168 CHD1O14646 1710 aa24.73■■□□□ 1.55
LIMS3-202ENST00000479168 GRIN2AQ12879 1464 aa24.69■■□□□ 1.54
LIMS3-202ENST00000479168 IGF1RP08069 1367 aa24.67■■□□□ 1.54
LIMS3-202ENST00000479168 CUL7Q14999 1698 aa24.66■■□□□ 1.54
LIMS3-202ENST00000479168 NUP160Q12769 1436 aa24.58■■□□□ 1.53
LIMS3-202ENST00000479168 CLASP1Q7Z460 1538 aa24.57■■□□□ 1.52
LIMS3-202ENST00000479168 CARMIL1Q5VZK9 1371 aa24.56■■□□□ 1.52
LIMS3-202ENST00000479168 EEA1Q15075 1411 aa24.55■■□□□ 1.52
LIMS3-202ENST00000479168 CHIC1Q5VXU3 224 aa24.53■■□□□ 1.52
LIMS3-202ENST00000479168 CEP170Q5SW79 1584 aa24.49■■□□□ 1.51
LIMS3-202ENST00000479168 ARHGEF11O15085 1522 aa24.46■■□□□ 1.51
LIMS3-202ENST00000479168 RUSC2Q8N2Y8 1516 aa24.45■■□□□ 1.51
LIMS3-202ENST00000479168 RAPGEF2Q9Y4G8 1499 aa24.45■■□□□ 1.5
LIMS3-202ENST00000479168 KIAA0586Q9BVV6 1533 aa24.39■■□□□ 1.49
LIMS3-202ENST00000479168 RIMBP3CA6NJZ7 1639 aa24.39■■□□□ 1.49
LIMS3-202ENST00000479168 RIMBP3BA6NNM3 1639 aa24.39■■□□□ 1.49
LIMS3-202ENST00000479168 RIMBP3Q9UFD9 1639 aa24.39■■□□□ 1.49
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms