RNA–Protein interactions for RNA: ENST00000479080.1

CHD3-210, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 5

Gene CHD3, Length 519 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-210ENST00000479080 NISCHQ9Y2I1 1504 aa31.1■■■□□ 2.57
CHD3-210ENST00000479080 CCDC180Q9P1Z9 1646 aa27.34■■□□□ 1.97
CHD3-210ENST00000479080 ABCC9O60706 1549 aa26.27■■□□□ 1.8
CHD3-210ENST00000479080 ZCCHC6Q5VYS8 1495 aaKnown RBP26.07■■□□□ 1.76
CHD3-210ENST00000479080 DCAF1Q9Y4B6 1507 aa25.73■■□□□ 1.71
CHD3-210ENST00000479080 MYO15BQ96JP2 1530 aa25.61■■□□□ 1.69
CHD3-210ENST00000479080 DCAF8L2P0C7V8 631 aa25.6■■□□□ 1.69
CHD3-210ENST00000479080 NACADO15069 1562 aa25.56■■□□□ 1.68
CHD3-210ENST00000479080 RB1CC1Q8TDY2 1594 aa25.44■■□□□ 1.66
CHD3-210ENST00000479080 SCRIBQ14160 1630 aa25.06■■□□□ 1.6
CHD3-210ENST00000479080 UNC13AQ9UPW8 1703 aa24.95■■□□□ 1.59
CHD3-210ENST00000479080 SHROOM4Q9ULL8 1493 aa24.93■■□□□ 1.58
CHD3-210ENST00000479080 BICRAQ9NZM4 1560 aa24.8■■□□□ 1.56
CHD3-210ENST00000479080 PABPN1Q86U42 306 aaKnown RBP eCLIP24.63■■□□□ 1.53
CHD3-210ENST00000479080 CECR2Q9BXF3 1484 aa24.24■■□□□ 1.47
CHD3-210ENST00000479080 MROH2BQ7Z745 1585 aa24.03■■□□□ 1.44
CHD3-210ENST00000479080 EIF4G1Q04637 1599 aaKnown RBP24.03■■□□□ 1.44
CHD3-210ENST00000479080 BAZ1AQ9NRL2 1556 aaPredicted RBP24.02■■□□□ 1.44
CHD3-210ENST00000479080 SMARCA4P51532 1647 aa24.02■■□□□ 1.44
CHD3-210ENST00000479080 RSF1Q96T23 1441 aaPredicted RBP23.93■■□□□ 1.42
CHD3-210ENST00000479080 WIZO95785 1651 aa23.78■■□□□ 1.4
CHD3-210ENST00000479080 PEG3Q9GZU2 1588 aa23.78■■□□□ 1.4
CHD3-210ENST00000479080 CC2D2AQ9P2K1 1620 aa23.77■■□□□ 1.4
CHD3-210ENST00000479080 ATAD2BQ9ULI0 1458 aa23.75■■□□□ 1.39
CHD3-210ENST00000479080 DNAJC5BQ9UF47 199 aa23.67■■□□□ 1.38
CHD3-210ENST00000479080 SUPT5HO00267 1087 aaKnown RBP23.66■■□□□ 1.38
CHD3-210ENST00000479080 SMARCA2P51531 1590 aa23.65■■□□□ 1.38
CHD3-210ENST00000479080 NCAPD3P42695 1498 aa23.62■■□□□ 1.37
CHD3-210ENST00000479080 HMGXB3Q12766 1538 aa23.55■■□□□ 1.36
CHD3-210ENST00000479080 TOP2AP11388 1531 aaKnown RBP23.54■■□□□ 1.36
CHD3-210ENST00000479080 BAZ1BQ9UIG0 1483 aaKnown RBP23.52■■□□□ 1.36
CHD3-210ENST00000479080 CCDC88BA6NC98 1476 aa23.27■■□□□ 1.32
CHD3-210ENST00000479080 CFTRP13569 1480 aa22.95■■□□□ 1.26
CHD3-210ENST00000479080 NESP48681 1621 aa22.95■■□□□ 1.26
CHD3-210ENST00000479080 CADPSQ9ULU8 1353 aa22.94■■□□□ 1.26
CHD3-210ENST00000479080 LAMC3Q9Y6N6 1575 aa22.86■■□□□ 1.25
CHD3-210ENST00000479080 PRDM2Q13029 1718 aa22.77■■□□□ 1.23
CHD3-210ENST00000479080 FANCD2Q9BXW9 1451 aa22.69■■□□□ 1.22
CHD3-210ENST00000479080 KIF21AQ7Z4S6 1674 aa22.64■■□□□ 1.21
CHD3-210ENST00000479080 PDS5BQ9NTI5 1447 aa22.64■■□□□ 1.21
CHD3-210ENST00000479080 ABCC8Q09428 1581 aa22.63■■□□□ 1.21
CHD3-210ENST00000479080 CEP164Q9UPV0 1460 aa22.58■■□□□ 1.2
CHD3-210ENST00000479080 CUX1P39880 1505 aa22.51■■□□□ 1.19
CHD3-210ENST00000479080 URB2Q14146 1524 aaKnown RBP22.5■■□□□ 1.19
CHD3-210ENST00000479080 SYNJ1O43426 1573 aa22.5■■□□□ 1.19
CHD3-210ENST00000479080 WRNQ14191 1432 aaPredicted RBP eCLIP22.49■■□□□ 1.19
CHD3-210ENST00000479080 CHIC1Q5VXU3 224 aa22.49■■□□□ 1.19
CHD3-210ENST00000479080 ERCC6Q03468 1493 aa22.48■■□□□ 1.19
CHD3-210ENST00000479080 THOC2Q8NI27 1593 aaKnown RBP22.47■■□□□ 1.19
CHD3-210ENST00000479080 MRC2Q9UBG0 1479 aa22.45■■□□□ 1.18
CHD3-210ENST00000479080 BIVM-ERCC5R4GMW8 1640 aa22.42■■□□□ 1.18
CHD3-210ENST00000479080 DNMBPQ6XZF7 1577 aa22.42■■□□□ 1.18
CHD3-210ENST00000479080 TOPBP1Q92547 1522 aa22.41■■□□□ 1.18
CHD3-210ENST00000479080 TOP2BQ02880 1626 aa22.41■■□□□ 1.18
CHD3-210ENST00000479080 WDR62O43379 1518 aa22.39■■□□□ 1.17
CHD3-210ENST00000479080 FGD5Q6ZNL6 1462 aa22.3■■□□□ 1.16
CHD3-210ENST00000479080 POLA1P09884 1462 aaPredicted RBP22.28■■□□□ 1.16
CHD3-210ENST00000479080 TRIM41Q8WV44 630 aa22.26■■□□□ 1.15
CHD3-210ENST00000479080 CUX2O14529 1486 aa22.23■■□□□ 1.15
CHD3-210ENST00000479080 RAD54L2Q9Y4B4 1467 aa22.2■■□□□ 1.14
CHD3-210ENST00000479080 DNAJC5Q9H3Z4 198 aa22.19■■□□□ 1.14
CHD3-210ENST00000479080 TARBP1Q13395 1621 aaKnown RBP22.16■■□□□ 1.14
CHD3-210ENST00000479080 SOGA1O94964 1423 aa22.13■■□□□ 1.13
CHD3-210ENST00000479080 WDR97A6NE52 1622 aa22.13■■□□□ 1.13
CHD3-210ENST00000479080 ABCA10Q8WWZ4 1543 aa22.1■■□□□ 1.13
CHD3-210ENST00000479080 IFT140Q96RY7 1462 aa22.09■■□□□ 1.13
CHD3-210ENST00000479080 RUSC2Q8N2Y8 1516 aa22.07■■□□□ 1.12
CHD3-210ENST00000479080 ZNF608Q9ULD9 1512 aaPredicted RBP22.03■■□□□ 1.12
CHD3-210ENST00000479080 ABCA5Q8WWZ7 1642 aa21.99■■□□□ 1.11
CHD3-210ENST00000479080 TDRD9Q8NDG6 1382 aaKnown RBP21.98■■□□□ 1.11
CHD3-210ENST00000479080 AQRO60306 1485 aaKnown RBP eCLIP21.94■■□□□ 1.1
CHD3-210ENST00000479080 EIF4G3O43432 1585 aaKnown RBP21.93■■□□□ 1.1
CHD3-210ENST00000479080 KIF27Q86VH2 1401 aa21.93■■□□□ 1.1
CHD3-210ENST00000479080 GAPVD1Q14C86 1478 aa21.89■■□□□ 1.09
CHD3-210ENST00000479080 EEA1Q15075 1411 aa21.88■■□□□ 1.09
CHD3-210ENST00000479080 FAM9AQ8IZU1 332 aaPredicted RBP21.86■■□□□ 1.09
CHD3-210ENST00000479080 IGF1RP08069 1367 aa21.85■■□□□ 1.09
CHD3-210ENST00000479080 PBRM1Q86U86 1689 aa21.83■■□□□ 1.09
CHD3-210ENST00000479080 ERICH3Q5RHP9 1530 aa21.81■■□□□ 1.08
CHD3-210ENST00000479080 GRIN2BQ13224 1484 aa21.8■■□□□ 1.08
CHD3-210ENST00000479080 CSRNP3Q8WYN3 585 aa21.77■■□□□ 1.08
CHD3-210ENST00000479080 PRXQ9BXM0 1461 aa21.76■■□□□ 1.07
CHD3-210ENST00000479080 SNAPC4Q5SXM2 1469 aa21.75■■□□□ 1.07
CHD3-210ENST00000479080 ADAMTS12P58397 1594 aa21.74■■□□□ 1.07
CHD3-210ENST00000479080 CUL7Q14999 1698 aa21.7■■□□□ 1.06
CHD3-210ENST00000479080 KIF21BO75037 1637 aa21.69■■□□□ 1.06
CHD3-210ENST00000479080 CARMIL1Q5VZK9 1371 aa21.68■■□□□ 1.06
CHD3-210ENST00000479080 MAGI1Q96QZ7 1491 aaPredicted RBP21.68■■□□□ 1.06
CHD3-210ENST00000479080 RAPGEF2Q9Y4G8 1499 aa21.66■■□□□ 1.06
CHD3-210ENST00000479080 FHAD1B1AJZ9 1412 aa21.65■■□□□ 1.06
CHD3-210ENST00000479080 SYNJ2O15056 1496 aa21.6■■□□□ 1.05
CHD3-210ENST00000479080 GOLGA3Q08378 1498 aa21.58■■□□□ 1.04
CHD3-210ENST00000479080 LOC105371045A0A1W2PR82 267 aa21.57■■□□□ 1.04
CHD3-210ENST00000479080 GRIN2AQ12879 1464 aa21.56■■□□□ 1.04
CHD3-210ENST00000479080 EHMT2Q96KQ7 1210 aa21.55■■□□□ 1.04
CHD3-210ENST00000479080 CHD1O14646 1710 aa21.52■■□□□ 1.03
CHD3-210ENST00000479080 CEP170Q5SW79 1584 aa21.48■■□□□ 1.03
CHD3-210ENST00000479080 NUP160Q12769 1436 aa21.46■■□□□ 1.03
CHD3-210ENST00000479080 CHMP7Q8WUX9 453 aaPredicted RBP21.45■■□□□ 1.02
CHD3-210ENST00000479080 FBLN2P98095 1184 aa21.43■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 70.6 ms