RNA–Protein interactions for RNA: ENST00000478080.5

CDHR3-211, Transcript of cadherin related family member 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CDHR3, Length 2,633 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDHR3-211ENST00000478080 NISCHQ9Y2I1 1504 aa19.09■□□□□ 0.65
CDHR3-211ENST00000478080 CCDC180Q9P1Z9 1646 aa16.32■□□□□ 0.2
CDHR3-211ENST00000478080 SHROOM4Q9ULL8 1493 aa16.16■□□□□ 0.18
CDHR3-211ENST00000478080 ZCCHC6Q5VYS8 1495 aaKnown RBP16.09■□□□□ 0.17
CDHR3-211ENST00000478080 DCAF8L2P0C7V8 631 aa15.97■□□□□ 0.15
CDHR3-211ENST00000478080 SUPT5HO00267 1087 aaKnown RBP15.72■□□□□ 0.11
CDHR3-211ENST00000478080 DCAF1Q9Y4B6 1507 aa15.63■□□□□ 0.09
CDHR3-211ENST00000478080 ABCC9O60706 1549 aa15.4■□□□□ 0.06
CDHR3-211ENST00000478080 SCRIBQ14160 1630 aa15.31■□□□□ 0.04
CDHR3-211ENST00000478080 MYO15BQ96JP2 1530 aa15.26■□□□□ 0.03
CDHR3-211ENST00000478080 NACADO15069 1562 aa15.16■□□□□ 0.02
CDHR3-211ENST00000478080 CHIC1Q5VXU3 224 aa15.13■□□□□ 0.01
CDHR3-211ENST00000478080 RSF1Q96T23 1441 aaPredicted RBP15.03■□□□□ -0
CDHR3-211ENST00000478080 RB1CC1Q8TDY2 1594 aa14.97□□□□□ -0.01
CDHR3-211ENST00000478080 CECR2Q9BXF3 1484 aa14.95□□□□□ -0.02
CDHR3-211ENST00000478080 MROH2BQ7Z745 1585 aa14.86□□□□□ -0.03
CDHR3-211ENST00000478080 UNC13AQ9UPW8 1703 aa14.78□□□□□ -0.04
CDHR3-211ENST00000478080 WIZO95785 1651 aa14.77□□□□□ -0.04
CDHR3-211ENST00000478080 LOC105371045A0A1W2PR82 267 aa14.72□□□□□ -0.05
CDHR3-211ENST00000478080 PABPN1Q86U42 306 aaKnown RBP eCLIP14.71□□□□□ -0.06
CDHR3-211ENST00000478080 BAZ1AQ9NRL2 1556 aaPredicted RBP14.67□□□□□ -0.06
CDHR3-211ENST00000478080 TRIM41Q8WV44 630 aa14.63□□□□□ -0.07
CDHR3-211ENST00000478080 BICRAQ9NZM4 1560 aa14.6□□□□□ -0.07
CDHR3-211ENST00000478080 SMARCA4P51532 1647 aa14.6□□□□□ -0.07
CDHR3-211ENST00000478080 FAM9AQ8IZU1 332 aaPredicted RBP14.54□□□□□ -0.08
CDHR3-211ENST00000478080 TOP2AP11388 1531 aaKnown RBP14.5□□□□□ -0.09
CDHR3-211ENST00000478080 CCDC88BA6NC98 1476 aa14.46□□□□□ -0.09
CDHR3-211ENST00000478080 EHMT2Q96KQ7 1210 aa14.46□□□□□ -0.09
CDHR3-211ENST00000478080 SMARCA2P51531 1590 aa14.43□□□□□ -0.1
CDHR3-211ENST00000478080 EIF4G1Q04637 1599 aaKnown RBP14.43□□□□□ -0.1
CDHR3-211ENST00000478080 PCGF6Q9BYE7 350 aa14.42□□□□□ -0.1
CDHR3-211ENST00000478080 ABCC8Q09428 1581 aa14.36□□□□□ -0.11
CDHR3-211ENST00000478080 PEG3Q9GZU2 1588 aa14.3□□□□□ -0.12
CDHR3-211ENST00000478080 ATAD2BQ9ULI0 1458 aa14.29□□□□□ -0.12
CDHR3-211ENST00000478080 BAZ1BQ9UIG0 1483 aaKnown RBP14.23□□□□□ -0.13
CDHR3-211ENST00000478080 HRCP23327 699 aa14.2□□□□□ -0.14
CDHR3-211ENST00000478080 SOGA1O94964 1423 aa14.17□□□□□ -0.14
CDHR3-211ENST00000478080 TRIM26Q12899 539 aaPredicted RBP14.16□□□□□ -0.14
CDHR3-211ENST00000478080 PPARGC1BQ86YN6 1023 aaKnown RBP14.13□□□□□ -0.15
CDHR3-211ENST00000478080 RUSC2Q8N2Y8 1516 aa14.13□□□□□ -0.15
CDHR3-211ENST00000478080 WRNQ14191 1432 aaPredicted RBP eCLIP14.12□□□□□ -0.15
CDHR3-211ENST00000478080 SYNJ1O43426 1573 aa14.07□□□□□ -0.16
CDHR3-211ENST00000478080 CSRNP3Q8WYN3 585 aa14.05□□□□□ -0.16
CDHR3-211ENST00000478080 NCAPD3P42695 1498 aa14.04□□□□□ -0.16
CDHR3-211ENST00000478080 HMGXB3Q12766 1538 aa14□□□□□ -0.17
CDHR3-211ENST00000478080 UBTFP17480 764 aaKnown RBP13.98□□□□□ -0.17
CDHR3-211ENST00000478080 EEA1Q15075 1411 aa13.98□□□□□ -0.17
CDHR3-211ENST00000478080 CEP162Q5TB80 1403 aa13.95□□□□□ -0.18
CDHR3-211ENST00000478080 TNIKQ9UKE5 1360 aa13.94□□□□□ -0.18
CDHR3-211ENST00000478080 TTBK1Q5TCY1 1321 aaPredicted RBP13.91□□□□□ -0.18
CDHR3-211ENST00000478080 GOLGA3Q08378 1498 aa13.9□□□□□ -0.18
CDHR3-211ENST00000478080 TOP2BQ02880 1626 aa13.89□□□□□ -0.19
CDHR3-211ENST00000478080 CFTRP13569 1480 aa13.86□□□□□ -0.19
CDHR3-211ENST00000478080 CC2D2AQ9P2K1 1620 aa13.85□□□□□ -0.19
CDHR3-211ENST00000478080 CUX1P39880 1505 aa13.84□□□□□ -0.19
CDHR3-211ENST00000478080 CEP164Q9UPV0 1460 aa13.84□□□□□ -0.19
CDHR3-211ENST00000478080 BIVM-ERCC5R4GMW8 1640 aa13.84□□□□□ -0.19
CDHR3-211ENST00000478080 RAPGEF2Q9Y4G8 1499 aa13.83□□□□□ -0.2
CDHR3-211ENST00000478080 RANGAP1P46060 587 aaPredicted RBP13.82□□□□□ -0.2
CDHR3-211ENST00000478080 KIF21BO75037 1637 aa13.82□□□□□ -0.2
CDHR3-211ENST00000478080 CADPSQ9ULU8 1353 aa13.77□□□□□ -0.21
CDHR3-211ENST00000478080 CLIP1P30622 1438 aa13.75□□□□□ -0.21
CDHR3-211ENST00000478080 PRDM2Q13029 1718 aa13.71□□□□□ -0.21
CDHR3-211ENST00000478080 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.7□□□□□ -0.22
CDHR3-211ENST00000478080 PRXQ9BXM0 1461 aa13.69□□□□□ -0.22
CDHR3-211ENST00000478080 KIF27Q86VH2 1401 aa13.69□□□□□ -0.22
CDHR3-211ENST00000478080 ZEB1P37275 1124 aaPredicted RBP13.69□□□□□ -0.22
CDHR3-211ENST00000478080 NESP48681 1621 aa13.66□□□□□ -0.22
CDHR3-211ENST00000478080 DNAJC5BQ9UF47 199 aa13.65□□□□□ -0.22
CDHR3-211ENST00000478080 VPS8Q8N3P4 1428 aa13.64□□□□□ -0.23
CDHR3-211ENST00000478080 ERICH3Q5RHP9 1530 aa13.64□□□□□ -0.23
CDHR3-211ENST00000478080 CUX2O14529 1486 aa13.64□□□□□ -0.23
CDHR3-211ENST00000478080 FANCD2Q9BXW9 1451 aa13.64□□□□□ -0.23
CDHR3-211ENST00000478080 FGD5Q6ZNL6 1462 aa13.63□□□□□ -0.23
CDHR3-211ENST00000478080 CCER1Q8TC90 406 aaPredicted RBP13.61□□□□□ -0.23
CDHR3-211ENST00000478080 IGF1RP08069 1367 aa13.59□□□□□ -0.23
CDHR3-211ENST00000478080 APLP2Q06481 763 aa13.58□□□□□ -0.24
CDHR3-211ENST00000478080 ARAP1Q96P48 1450 aa13.57□□□□□ -0.24
CDHR3-211ENST00000478080 RAD54L2Q9Y4B4 1467 aa13.55□□□□□ -0.24
CDHR3-211ENST00000478080 HNRNPUL2Q1KMD3 747 aaKnown RBP13.53□□□□□ -0.24
CDHR3-211ENST00000478080 TOPBP1Q92547 1522 aa13.52□□□□□ -0.24
CDHR3-211ENST00000478080 CARMIL1Q5VZK9 1371 aa13.52□□□□□ -0.25
CDHR3-211ENST00000478080 DNMBPQ6XZF7 1577 aa13.51□□□□□ -0.25
CDHR3-211ENST00000478080 POLA1P09884 1462 aaPredicted RBP13.5□□□□□ -0.25
CDHR3-211ENST00000478080 KANK4Q5T7N3 995 aaPredicted RBP13.5□□□□□ -0.25
CDHR3-211ENST00000478080 ARHGAP35Q9NRY4 1499 aa13.49□□□□□ -0.25
CDHR3-211ENST00000478080 LAMC3Q9Y6N6 1575 aa13.47□□□□□ -0.25
CDHR3-211ENST00000478080 URB2Q14146 1524 aaKnown RBP13.47□□□□□ -0.25
CDHR3-211ENST00000478080 ABCA10Q8WWZ4 1543 aa13.45□□□□□ -0.26
CDHR3-211ENST00000478080 P3H3Q8IVL6 736 aa13.43□□□□□ -0.26
CDHR3-211ENST00000478080 TDRD9Q8NDG6 1382 aaKnown RBP13.4□□□□□ -0.26
CDHR3-211ENST00000478080 PDS5BQ9NTI5 1447 aa13.4□□□□□ -0.26
CDHR3-211ENST00000478080 KIF21AQ7Z4S6 1674 aa13.4□□□□□ -0.27
CDHR3-211ENST00000478080 WDR97A6NE52 1622 aa13.34□□□□□ -0.27
CDHR3-211ENST00000478080 ATP1B4Q9UN42 357 aaPredicted RBP13.33□□□□□ -0.28
CDHR3-211ENST00000478080 FHOD3Q2V2M9 1422 aa13.32□□□□□ -0.28
CDHR3-211ENST00000478080 CUL7Q14999 1698 aa13.31□□□□□ -0.28
CDHR3-211ENST00000478080 GAPVD1Q14C86 1478 aa13.31□□□□□ -0.28
CDHR3-211ENST00000478080 ABCA5Q8WWZ7 1642 aa13.3□□□□□ -0.28
CDHR3-211ENST00000478080 ITGAEP38570 1179 aa13.29□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms