RNA–Protein interactions for RNA: ENST00000477069.5

NUP188-205, Transcript of nucleoporin 188, humanhuman

TSL 1 (best)

Gene NUP188, Length 2,941 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP188-205ENST00000477069 NISCHQ9Y2I1 1504 aa25.2■■□□□ 1.63
NUP188-205ENST00000477069 CCDC180Q9P1Z9 1646 aa21.8■■□□□ 1.08
NUP188-205ENST00000477069 ZCCHC6Q5VYS8 1495 aaKnown RBP21.29■■□□□ 1
NUP188-205ENST00000477069 DCAF1Q9Y4B6 1507 aa20.84■□□□□ 0.93
NUP188-205ENST00000477069 SHROOM4Q9ULL8 1493 aa20.84■□□□□ 0.93
NUP188-205ENST00000477069 DCAF8L2P0C7V8 631 aa20.51■□□□□ 0.87
NUP188-205ENST00000477069 MYO15BQ96JP2 1530 aa20.41■□□□□ 0.86
NUP188-205ENST00000477069 SUPT5HO00267 1087 aaKnown RBP20.21■□□□□ 0.83
NUP188-205ENST00000477069 ABCC9O60706 1549 aa20.14■□□□□ 0.81
NUP188-205ENST00000477069 NACADO15069 1562 aa20.14■□□□□ 0.81
NUP188-205ENST00000477069 SCRIBQ14160 1630 aa20.11■□□□□ 0.81
NUP188-205ENST00000477069 RB1CC1Q8TDY2 1594 aa19.85■□□□□ 0.77
NUP188-205ENST00000477069 RSF1Q96T23 1441 aaPredicted RBP19.72■□□□□ 0.75
NUP188-205ENST00000477069 CHIC1Q5VXU3 224 aa19.64■□□□□ 0.73
NUP188-205ENST00000477069 UNC13AQ9UPW8 1703 aa19.64■□□□□ 0.73
NUP188-205ENST00000477069 CECR2Q9BXF3 1484 aa19.57■□□□□ 0.72
NUP188-205ENST00000477069 MROH2BQ7Z745 1585 aa19.52■□□□□ 0.71
NUP188-205ENST00000477069 WIZO95785 1651 aa19.41■□□□□ 0.7
NUP188-205ENST00000477069 BAZ1AQ9NRL2 1556 aaPredicted RBP19.4■□□□□ 0.7
NUP188-205ENST00000477069 BICRAQ9NZM4 1560 aa19.34■□□□□ 0.69
NUP188-205ENST00000477069 SMARCA4P51532 1647 aa19.31■□□□□ 0.68
NUP188-205ENST00000477069 TOP2AP11388 1531 aaKnown RBP19.18■□□□□ 0.66
NUP188-205ENST00000477069 EIF4G1Q04637 1599 aaKnown RBP19.15■□□□□ 0.66
NUP188-205ENST00000477069 PEG3Q9GZU2 1588 aa19.06■□□□□ 0.64
NUP188-205ENST00000477069 PABPN1Q86U42 306 aaKnown RBP eCLIP19.05■□□□□ 0.64
NUP188-205ENST00000477069 SMARCA2P51531 1590 aa19.04■□□□□ 0.64
NUP188-205ENST00000477069 CCDC88BA6NC98 1476 aa18.98■□□□□ 0.63
NUP188-205ENST00000477069 TRIM41Q8WV44 630 aa18.96■□□□□ 0.63
NUP188-205ENST00000477069 LOC105371045A0A1W2PR82 267 aa18.91■□□□□ 0.62
NUP188-205ENST00000477069 ATAD2BQ9ULI0 1458 aa18.84■□□□□ 0.61
NUP188-205ENST00000477069 ABCC8Q09428 1581 aa18.77■□□□□ 0.59
NUP188-205ENST00000477069 BAZ1BQ9UIG0 1483 aaKnown RBP18.73■□□□□ 0.59
NUP188-205ENST00000477069 FAM9AQ8IZU1 332 aaPredicted RBP18.64■□□□□ 0.57
NUP188-205ENST00000477069 HMGXB3Q12766 1538 aa18.62■□□□□ 0.57
NUP188-205ENST00000477069 NCAPD3P42695 1498 aa18.58■□□□□ 0.56
NUP188-205ENST00000477069 SYNJ1O43426 1573 aa18.51■□□□□ 0.55
NUP188-205ENST00000477069 WRNQ14191 1432 aaPredicted RBP eCLIP18.51■□□□□ 0.55
NUP188-205ENST00000477069 PCGF6Q9BYE7 350 aa18.49■□□□□ 0.55
NUP188-205ENST00000477069 SOGA1O94964 1423 aa18.47■□□□□ 0.55
NUP188-205ENST00000477069 EEA1Q15075 1411 aa18.46■□□□□ 0.55
NUP188-205ENST00000477069 RUSC2Q8N2Y8 1516 aa18.41■□□□□ 0.54
NUP188-205ENST00000477069 BIVM-ERCC5R4GMW8 1640 aa18.38■□□□□ 0.53
NUP188-205ENST00000477069 TOP2BQ02880 1626 aa18.37■□□□□ 0.53
NUP188-205ENST00000477069 TRIM26Q12899 539 aaPredicted RBP18.36■□□□□ 0.53
NUP188-205ENST00000477069 EHMT2Q96KQ7 1210 aa18.36■□□□□ 0.53
NUP188-205ENST00000477069 HRCP23327 699 aa18.36■□□□□ 0.53
NUP188-205ENST00000477069 PRDM2Q13029 1718 aa18.35■□□□□ 0.53
NUP188-205ENST00000477069 CFTRP13569 1480 aa18.31■□□□□ 0.52
NUP188-205ENST00000477069 KIF21BO75037 1637 aa18.29■□□□□ 0.52
NUP188-205ENST00000477069 CC2D2AQ9P2K1 1620 aa18.29■□□□□ 0.52
NUP188-205ENST00000477069 CSRNP3Q8WYN3 585 aa18.29■□□□□ 0.52
NUP188-205ENST00000477069 TNIKQ9UKE5 1360 aa18.28■□□□□ 0.52
NUP188-205ENST00000477069 GOLGA3Q08378 1498 aa18.25■□□□□ 0.51
NUP188-205ENST00000477069 CEP162Q5TB80 1403 aa18.23■□□□□ 0.51
NUP188-205ENST00000477069 CUX1P39880 1505 aa18.22■□□□□ 0.51
NUP188-205ENST00000477069 CEP164Q9UPV0 1460 aa18.2■□□□□ 0.5
NUP188-205ENST00000477069 CADPSQ9ULU8 1353 aa18.1■□□□□ 0.49
NUP188-205ENST00000477069 RAPGEF2Q9Y4G8 1499 aa18.07■□□□□ 0.48
NUP188-205ENST00000477069 ERICH3Q5RHP9 1530 aa18.06■□□□□ 0.48
NUP188-205ENST00000477069 UBTFP17480 764 aaKnown RBP18.05■□□□□ 0.48
NUP188-205ENST00000477069 PRXQ9BXM0 1461 aa18.03■□□□□ 0.48
NUP188-205ENST00000477069 KIF27Q86VH2 1401 aa17.98■□□□□ 0.47
NUP188-205ENST00000477069 PPARGC1BQ86YN6 1023 aaKnown RBP17.96■□□□□ 0.47
NUP188-205ENST00000477069 CLIP1P30622 1438 aa17.96■□□□□ 0.47
NUP188-205ENST00000477069 FANCD2Q9BXW9 1451 aa17.94■□□□□ 0.46
NUP188-205ENST00000477069 FGD5Q6ZNL6 1462 aa17.91■□□□□ 0.46
NUP188-205ENST00000477069 LAMC3Q9Y6N6 1575 aa17.89■□□□□ 0.45
NUP188-205ENST00000477069 VPS8Q8N3P4 1428 aa17.89■□□□□ 0.45
NUP188-205ENST00000477069 DNMBPQ6XZF7 1577 aa17.89■□□□□ 0.45
NUP188-205ENST00000477069 NESP48681 1621 aa17.87■□□□□ 0.45
NUP188-205ENST00000477069 CUX2O14529 1486 aa17.85■□□□□ 0.45
NUP188-205ENST00000477069 TOPBP1Q92547 1522 aa17.82■□□□□ 0.44
NUP188-205ENST00000477069 ZEB1P37275 1124 aaPredicted RBP17.82■□□□□ 0.44
NUP188-205ENST00000477069 ARAP1Q96P48 1450 aa17.81■□□□□ 0.44
NUP188-205ENST00000477069 IGF1RP08069 1367 aa17.8■□□□□ 0.44
NUP188-205ENST00000477069 WDR97A6NE52 1622 aa17.77■□□□□ 0.44
NUP188-205ENST00000477069 ABCA10Q8WWZ4 1543 aa17.77■□□□□ 0.43
NUP188-205ENST00000477069 POLA1P09884 1462 aaPredicted RBP17.77■□□□□ 0.43
NUP188-205ENST00000477069 URB2Q14146 1524 aaKnown RBP17.73■□□□□ 0.43
NUP188-205ENST00000477069 KIF21AQ7Z4S6 1674 aa17.71■□□□□ 0.43
NUP188-205ENST00000477069 RAD54L2Q9Y4B4 1467 aa17.71■□□□□ 0.43
NUP188-205ENST00000477069 ARHGAP35Q9NRY4 1499 aa17.7■□□□□ 0.42
NUP188-205ENST00000477069 TTBK1Q5TCY1 1321 aaPredicted RBP17.7■□□□□ 0.42
NUP188-205ENST00000477069 CARMIL1Q5VZK9 1371 aa17.69■□□□□ 0.42
NUP188-205ENST00000477069 DNAJC5BQ9UF47 199 aa17.68■□□□□ 0.42
NUP188-205ENST00000477069 CUL7Q14999 1698 aa17.67■□□□□ 0.42
NUP188-205ENST00000477069 PDS5BQ9NTI5 1447 aa17.66■□□□□ 0.42
NUP188-205ENST00000477069 RANGAP1P46060 587 aaPredicted RBP17.65■□□□□ 0.42
NUP188-205ENST00000477069 ABCA5Q8WWZ7 1642 aa17.64■□□□□ 0.42
NUP188-205ENST00000477069 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.6■□□□□ 0.41
NUP188-205ENST00000477069 CTTNBP2Q8WZ74 1663 aa17.59■□□□□ 0.41
NUP188-205ENST00000477069 TARBP1Q13395 1621 aaKnown RBP17.57■□□□□ 0.4
NUP188-205ENST00000477069 APLP2Q06481 763 aa17.57■□□□□ 0.4
NUP188-205ENST00000477069 CCER1Q8TC90 406 aaPredicted RBP17.52■□□□□ 0.4
NUP188-205ENST00000477069 MAP3K1Q13233 1512 aa17.52■□□□□ 0.4
NUP188-205ENST00000477069 EFCAB5A4FU69 1503 aa17.5■□□□□ 0.39
NUP188-205ENST00000477069 TIAM1Q13009 1591 aa17.49■□□□□ 0.39
NUP188-205ENST00000477069 GAPVD1Q14C86 1478 aa17.49■□□□□ 0.39
NUP188-205ENST00000477069 KANK4Q5T7N3 995 aaPredicted RBP17.49■□□□□ 0.39
NUP188-205ENST00000477069 CFAP43Q8NDM7 1665 aa17.48■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms