RNA–Protein interactions for RNA: ENST00000476494.1

CLDN4-205, Transcript of claudin 4, humanhuman

TSL 4

Gene CLDN4, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN4-205ENST00000476494 NISCHQ9Y2I1 1504 aa17.12■□□□□ 0.33
CLDN4-205ENST00000476494 ABCC9O60706 1549 aa16.44■□□□□ 0.22
CLDN4-205ENST00000476494 DNAJC5BQ9UF47 199 aa16.31■□□□□ 0.2
CLDN4-205ENST00000476494 CCDC180Q9P1Z9 1646 aa15.67■□□□□ 0.1
CLDN4-205ENST00000476494 DNAJC5Q9H3Z4 198 aa15.5■□□□□ 0.07
CLDN4-205ENST00000476494 RB1CC1Q8TDY2 1594 aa15.28■□□□□ 0.04
CLDN4-205ENST00000476494 PABPN1Q86U42 306 aaKnown RBP eCLIP15.2■□□□□ 0.02
CLDN4-205ENST00000476494 UNC13AQ9UPW8 1703 aa15.02□□□□□ -0.01
CLDN4-205ENST00000476494 NACADO15069 1562 aa15.02□□□□□ -0.01
CLDN4-205ENST00000476494 BICRAQ9NZM4 1560 aa14.99□□□□□ -0.01
CLDN4-205ENST00000476494 CECR2Q9BXF3 1484 aa14.9□□□□□ -0.02
CLDN4-205ENST00000476494 CC2D2AQ9P2K1 1620 aa14.84□□□□□ -0.03
CLDN4-205ENST00000476494 DCAF8L2P0C7V8 631 aa14.67□□□□□ -0.06
CLDN4-205ENST00000476494 EIF4G1Q04637 1599 aaKnown RBP14.61□□□□□ -0.07
CLDN4-205ENST00000476494 SHROOM4Q9ULL8 1493 aa14.61□□□□□ -0.07
CLDN4-205ENST00000476494 MYO15BQ96JP2 1530 aa14.61□□□□□ -0.07
CLDN4-205ENST00000476494 CUX2O14529 1486 aa14.5□□□□□ -0.09
CLDN4-205ENST00000476494 TRIM41Q8WV44 630 aa14.33□□□□□ -0.12
CLDN4-205ENST00000476494 SCRIBQ14160 1630 aa14.2□□□□□ -0.14
CLDN4-205ENST00000476494 ERCC6Q03468 1493 aa14.17□□□□□ -0.14
CLDN4-205ENST00000476494 DCAF1Q9Y4B6 1507 aa14.11□□□□□ -0.15
CLDN4-205ENST00000476494 ZCCHC6Q5VYS8 1495 aaKnown RBP14.01□□□□□ -0.17
CLDN4-205ENST00000476494 NESP48681 1621 aa13.95□□□□□ -0.18
CLDN4-205ENST00000476494 THOC2Q8NI27 1593 aaKnown RBP13.95□□□□□ -0.18
CLDN4-205ENST00000476494 NCAPD3P42695 1498 aa13.93□□□□□ -0.18
CLDN4-205ENST00000476494 ATAD2BQ9ULI0 1458 aa13.75□□□□□ -0.21
CLDN4-205ENST00000476494 OSCARQ8IYS5 282 aa13.72□□□□□ -0.21
CLDN4-205ENST00000476494 SMARCA2P51531 1590 aa13.71□□□□□ -0.22
CLDN4-205ENST00000476494 HMGXB3Q12766 1538 aa13.69□□□□□ -0.22
CLDN4-205ENST00000476494 KIF21AQ7Z4S6 1674 aa13.69□□□□□ -0.22
CLDN4-205ENST00000476494 BAZ1AQ9NRL2 1556 aaPredicted RBP13.68□□□□□ -0.22
CLDN4-205ENST00000476494 LAMC3Q9Y6N6 1575 aa13.67□□□□□ -0.22
CLDN4-205ENST00000476494 RIMBP3CA6NJZ7 1639 aa13.63□□□□□ -0.23
CLDN4-205ENST00000476494 RIMBP3BA6NNM3 1639 aa13.63□□□□□ -0.23
CLDN4-205ENST00000476494 RIMBP3Q9UFD9 1639 aa13.63□□□□□ -0.23
CLDN4-205ENST00000476494 AEBP2Q6ZN18 517 aaPredicted RBP13.62□□□□□ -0.23
CLDN4-205ENST00000476494 PDS5BQ9NTI5 1447 aa13.6□□□□□ -0.23
CLDN4-205ENST00000476494 WDR62O43379 1518 aa13.57□□□□□ -0.24
CLDN4-205ENST00000476494 MRC2Q9UBG0 1479 aa13.55□□□□□ -0.24
CLDN4-205ENST00000476494 ARHGEF11O15085 1522 aa13.5□□□□□ -0.25
CLDN4-205ENST00000476494 SMARCA4P51532 1647 aa13.5□□□□□ -0.25
CLDN4-205ENST00000476494 BAZ1BQ9UIG0 1483 aaKnown RBP13.49□□□□□ -0.25
CLDN4-205ENST00000476494 TRHP20396 242 aaPredicted RBP13.46□□□□□ -0.25
CLDN4-205ENST00000476494 CYB5RLQ6IPT4 315 aa13.44□□□□□ -0.26
CLDN4-205ENST00000476494 CADPSQ9ULU8 1353 aa13.44□□□□□ -0.26
CLDN4-205ENST00000476494 PEG3Q9GZU2 1588 aa13.43□□□□□ -0.26
CLDN4-205ENST00000476494 ARAP1Q96P48 1450 aa13.35□□□□□ -0.27
CLDN4-205ENST00000476494 ILDR1Q86SU0 546 aaPredicted RBP13.33□□□□□ -0.28
CLDN4-205ENST00000476494 CEP164Q9UPV0 1460 aa13.3□□□□□ -0.28
CLDN4-205ENST00000476494 FANCD2Q9BXW9 1451 aa13.25□□□□□ -0.29
CLDN4-205ENST00000476494 URB2Q14146 1524 aaKnown RBP13.24□□□□□ -0.29
CLDN4-205ENST00000476494 ZNF608Q9ULD9 1512 aaPredicted RBP13.21□□□□□ -0.29
CLDN4-205ENST00000476494 MROH2BQ7Z745 1585 aa13.2□□□□□ -0.3
CLDN4-205ENST00000476494 RSF1Q96T23 1441 aaPredicted RBP13.16□□□□□ -0.3
CLDN4-205ENST00000476494 CFTRP13569 1480 aa13.14□□□□□ -0.31
CLDN4-205ENST00000476494 CHD1O14646 1710 aa13.09□□□□□ -0.31
CLDN4-205ENST00000476494 IFT140Q96RY7 1462 aa13.09□□□□□ -0.31
CLDN4-205ENST00000476494 EIF4G3O43432 1585 aaKnown RBP13.03□□□□□ -0.32
CLDN4-205ENST00000476494 CLASP1Q7Z460 1538 aa12.98□□□□□ -0.33
CLDN4-205ENST00000476494 WIZO95785 1651 aa12.97□□□□□ -0.33
CLDN4-205ENST00000476494 AQRO60306 1485 aaKnown RBP eCLIP12.97□□□□□ -0.33
CLDN4-205ENST00000476494 KDM4FA0A1W2PPD8 638 aa12.96□□□□□ -0.33
CLDN4-205ENST00000476494 FBLN2P98095 1184 aa12.93□□□□□ -0.34
CLDN4-205ENST00000476494 TOPBP1Q92547 1522 aa12.93□□□□□ -0.34
CLDN4-205ENST00000476494 TARBP1Q13395 1621 aaKnown RBP12.91□□□□□ -0.34
CLDN4-205ENST00000476494 PRDM2Q13029 1718 aa12.86□□□□□ -0.35
CLDN4-205ENST00000476494 GAPVD1Q14C86 1478 aa12.85□□□□□ -0.35
CLDN4-205ENST00000476494 KIF13AQ9H1H9 1805 aa12.83□□□□□ -0.35
CLDN4-205ENST00000476494 ABCC8Q09428 1581 aa12.81□□□□□ -0.36
CLDN4-205ENST00000476494 SYNJ1O43426 1573 aa12.8□□□□□ -0.36
CLDN4-205ENST00000476494 DNMBPQ6XZF7 1577 aa12.78□□□□□ -0.36
CLDN4-205ENST00000476494 SNAPC4Q5SXM2 1469 aa12.77□□□□□ -0.37
CLDN4-205ENST00000476494 POLA1P09884 1462 aaPredicted RBP12.75□□□□□ -0.37
CLDN4-205ENST00000476494 TDRD9Q8NDG6 1382 aaKnown RBP12.75□□□□□ -0.37
CLDN4-205ENST00000476494 CHMP7Q8WUX9 453 aaPredicted RBP12.75□□□□□ -0.37
CLDN4-205ENST00000476494 ERCC6L2Q5T890 1561 aa12.73□□□□□ -0.37
CLDN4-205ENST00000476494 RAD54L2Q9Y4B4 1467 aa12.72□□□□□ -0.37
CLDN4-205ENST00000476494 TOP2AP11388 1531 aaKnown RBP12.72□□□□□ -0.37
CLDN4-205ENST00000476494 MAGI1Q96QZ7 1491 aaPredicted RBP12.71□□□□□ -0.38
CLDN4-205ENST00000476494 FBXO41Q8TF61 875 aa12.69□□□□□ -0.38
CLDN4-205ENST00000476494 SYNJ2O15056 1496 aa12.69□□□□□ -0.38
CLDN4-205ENST00000476494 HECW2Q9P2P5 1572 aa12.66□□□□□ -0.38
CLDN4-205ENST00000476494 WDR97A6NE52 1622 aa12.66□□□□□ -0.38
CLDN4-205ENST00000476494 SOGA1O94964 1423 aa12.65□□□□□ -0.38
CLDN4-205ENST00000476494 CCDC88BA6NC98 1476 aa12.63□□□□□ -0.39
CLDN4-205ENST00000476494 ABCC10Q5T3U5 1492 aa12.63□□□□□ -0.39
CLDN4-205ENST00000476494 GRIN2BQ13224 1484 aa12.62□□□□□ -0.39
CLDN4-205ENST00000476494 FAM69CQ0P6D2 419 aa12.61□□□□□ -0.39
CLDN4-205ENST00000476494 KDM6BO15054 1643 aa12.59□□□□□ -0.39
CLDN4-205ENST00000476494 CEP170Q5SW79 1584 aa12.59□□□□□ -0.39
CLDN4-205ENST00000476494 ADGRL1O94910 1474 aa12.57□□□□□ -0.4
CLDN4-205ENST00000476494 DIP2BQ9P265 1576 aa12.56□□□□□ -0.4
CLDN4-205ENST00000476494 SHROOM2Q13796 1616 aa12.55□□□□□ -0.4
CLDN4-205ENST00000476494 LMTK3Q96Q04 1460 aa12.54□□□□□ -0.4
CLDN4-205ENST00000476494 FGD5Q6ZNL6 1462 aa12.53□□□□□ -0.4
CLDN4-205ENST00000476494 MAPKBP1O60336 1514 aa12.52□□□□□ -0.4
CLDN4-205ENST00000476494 SOCS7O14512 581 aa12.52□□□□□ -0.41
CLDN4-205ENST00000476494 ILDR2Q71H61 639 aa12.52□□□□□ -0.41
CLDN4-205ENST00000476494 NUP160Q12769 1436 aa12.52□□□□□ -0.41
CLDN4-205ENST00000476494 PBRM1Q86U86 1689 aa12.5□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms