RNA–Protein interactions for RNA: ENST00000475873.2

USP4-209, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 536 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-209ENST00000475873 NISCHQ9Y2I1 1504 aa13.06□□□□□ -0.32
USP4-209ENST00000475873 ABCC9O60706 1549 aa12.55□□□□□ -0.4
USP4-209ENST00000475873 DNAJC5BQ9UF47 199 aa12.39□□□□□ -0.43
USP4-209ENST00000475873 CCDC180Q9P1Z9 1646 aa11.93□□□□□ -0.5
USP4-209ENST00000475873 DNAJC5Q9H3Z4 198 aa11.7□□□□□ -0.54
USP4-209ENST00000475873 RB1CC1Q8TDY2 1594 aa11.62□□□□□ -0.55
USP4-209ENST00000475873 PABPN1Q86U42 306 aaKnown RBP eCLIP11.59□□□□□ -0.55
USP4-209ENST00000475873 UNC13AQ9UPW8 1703 aa11.45□□□□□ -0.58
USP4-209ENST00000475873 BICRAQ9NZM4 1560 aa11.43□□□□□ -0.58
USP4-209ENST00000475873 NACADO15069 1562 aa11.41□□□□□ -0.58
USP4-209ENST00000475873 CECR2Q9BXF3 1484 aa11.34□□□□□ -0.59
USP4-209ENST00000475873 CC2D2AQ9P2K1 1620 aa11.31□□□□□ -0.6
USP4-209ENST00000475873 DCAF8L2P0C7V8 631 aa11.17□□□□□ -0.62
USP4-209ENST00000475873 EIF4G1Q04637 1599 aaKnown RBP11.13□□□□□ -0.63
USP4-209ENST00000475873 SHROOM4Q9ULL8 1493 aa11.07□□□□□ -0.64
USP4-209ENST00000475873 MYO15BQ96JP2 1530 aa11.06□□□□□ -0.64
USP4-209ENST00000475873 CUX2O14529 1486 aa11□□□□□ -0.65
USP4-209ENST00000475873 TRIM41Q8WV44 630 aa10.91□□□□□ -0.66
USP4-209ENST00000475873 SCRIBQ14160 1630 aa10.87□□□□□ -0.67
USP4-209ENST00000475873 ERCC6Q03468 1493 aa10.8□□□□□ -0.68
USP4-209ENST00000475873 DCAF1Q9Y4B6 1507 aa10.72□□□□□ -0.69
USP4-209ENST00000475873 ZCCHC6Q5VYS8 1495 aaKnown RBP10.71□□□□□ -0.69
USP4-209ENST00000475873 NESP48681 1621 aa10.66□□□□□ -0.7
USP4-209ENST00000475873 THOC2Q8NI27 1593 aaKnown RBP10.65□□□□□ -0.71
USP4-209ENST00000475873 NCAPD3P42695 1498 aa10.57□□□□□ -0.72
USP4-209ENST00000475873 SMARCA2P51531 1590 aa10.5□□□□□ -0.73
USP4-209ENST00000475873 ATAD2BQ9ULI0 1458 aa10.48□□□□□ -0.73
USP4-209ENST00000475873 KIF21AQ7Z4S6 1674 aa10.47□□□□□ -0.73
USP4-209ENST00000475873 BAZ1AQ9NRL2 1556 aaPredicted RBP10.43□□□□□ -0.74
USP4-209ENST00000475873 HMGXB3Q12766 1538 aa10.43□□□□□ -0.74
USP4-209ENST00000475873 LAMC3Q9Y6N6 1575 aa10.39□□□□□ -0.75
USP4-209ENST00000475873 RIMBP3CA6NJZ7 1639 aa10.38□□□□□ -0.75
USP4-209ENST00000475873 RIMBP3BA6NNM3 1639 aa10.38□□□□□ -0.75
USP4-209ENST00000475873 RIMBP3Q9UFD9 1639 aa10.38□□□□□ -0.75
USP4-209ENST00000475873 OSCARQ8IYS5 282 aa10.37□□□□□ -0.75
USP4-209ENST00000475873 WDR62O43379 1518 aa10.33□□□□□ -0.76
USP4-209ENST00000475873 MRC2Q9UBG0 1479 aa10.32□□□□□ -0.76
USP4-209ENST00000475873 PDS5BQ9NTI5 1447 aa10.32□□□□□ -0.76
USP4-209ENST00000475873 SMARCA4P51532 1647 aa10.31□□□□□ -0.76
USP4-209ENST00000475873 AEBP2Q6ZN18 517 aaPredicted RBP10.3□□□□□ -0.76
USP4-209ENST00000475873 BAZ1BQ9UIG0 1483 aaKnown RBP10.3□□□□□ -0.76
USP4-209ENST00000475873 ARHGEF11O15085 1522 aa10.29□□□□□ -0.76
USP4-209ENST00000475873 TRHP20396 242 aaPredicted RBP10.22□□□□□ -0.77
USP4-209ENST00000475873 PEG3Q9GZU2 1588 aa10.22□□□□□ -0.77
USP4-209ENST00000475873 CYB5RLQ6IPT4 315 aa10.2□□□□□ -0.78
USP4-209ENST00000475873 CADPSQ9ULU8 1353 aa10.2□□□□□ -0.78
USP4-209ENST00000475873 ARAP1Q96P48 1450 aa10.18□□□□□ -0.78
USP4-209ENST00000475873 CEP164Q9UPV0 1460 aa10.14□□□□□ -0.79
USP4-209ENST00000475873 ILDR1Q86SU0 546 aaPredicted RBP10.11□□□□□ -0.79
USP4-209ENST00000475873 URB2Q14146 1524 aaKnown RBP10.11□□□□□ -0.79
USP4-209ENST00000475873 FANCD2Q9BXW9 1451 aa10.1□□□□□ -0.79
USP4-209ENST00000475873 MROH2BQ7Z745 1585 aa10.09□□□□□ -0.79
USP4-209ENST00000475873 ZNF608Q9ULD9 1512 aaPredicted RBP10.09□□□□□ -0.79
USP4-209ENST00000475873 CHD1O14646 1710 aa10□□□□□ -0.81
USP4-209ENST00000475873 CFTRP13569 1480 aa9.99□□□□□ -0.81
USP4-209ENST00000475873 RSF1Q96T23 1441 aaPredicted RBP9.99□□□□□ -0.81
USP4-209ENST00000475873 EIF4G3O43432 1585 aaKnown RBP9.97□□□□□ -0.81
USP4-209ENST00000475873 IFT140Q96RY7 1462 aa9.95□□□□□ -0.82
USP4-209ENST00000475873 WIZO95785 1651 aa9.93□□□□□ -0.82
USP4-209ENST00000475873 CLASP1Q7Z460 1538 aa9.89□□□□□ -0.83
USP4-209ENST00000475873 AQRO60306 1485 aaKnown RBP eCLIP9.89□□□□□ -0.833e-7■■■■■ 33.6
USP4-209ENST00000475873 TOPBP1Q92547 1522 aa9.87□□□□□ -0.83
USP4-209ENST00000475873 FBLN2P98095 1184 aa9.85□□□□□ -0.83
USP4-209ENST00000475873 TARBP1Q13395 1621 aaKnown RBP9.85□□□□□ -0.83
USP4-209ENST00000475873 KDM4FA0A1W2PPD8 638 aa9.84□□□□□ -0.83
USP4-209ENST00000475873 PRDM2Q13029 1718 aa9.8□□□□□ -0.84
USP4-209ENST00000475873 GAPVD1Q14C86 1478 aa9.79□□□□□ -0.84
USP4-209ENST00000475873 KIF13AQ9H1H9 1805 aa9.77□□□□□ -0.85
USP4-209ENST00000475873 SNAPC4Q5SXM2 1469 aa9.76□□□□□ -0.85
USP4-209ENST00000475873 ERCC6L2Q5T890 1561 aa9.75□□□□□ -0.85
USP4-209ENST00000475873 DNMBPQ6XZF7 1577 aa9.75□□□□□ -0.85
USP4-209ENST00000475873 SYNJ1O43426 1573 aa9.74□□□□□ -0.85
USP4-209ENST00000475873 POLA1P09884 1462 aaPredicted RBP9.73□□□□□ -0.85
USP4-209ENST00000475873 TDRD9Q8NDG6 1382 aaKnown RBP9.73□□□□□ -0.85
USP4-209ENST00000475873 RAD54L2Q9Y4B4 1467 aa9.72□□□□□ -0.85
USP4-209ENST00000475873 TOP2AP11388 1531 aaKnown RBP9.72□□□□□ -0.85
USP4-209ENST00000475873 ABCC8Q09428 1581 aa9.69□□□□□ -0.86
USP4-209ENST00000475873 CHMP7Q8WUX9 453 aaPredicted RBP9.67□□□□□ -0.86
USP4-209ENST00000475873 MAGI1Q96QZ7 1491 aaPredicted RBP9.66□□□□□ -0.86
USP4-209ENST00000475873 SYNJ2O15056 1496 aa9.66□□□□□ -0.86
USP4-209ENST00000475873 HECW2Q9P2P5 1572 aa9.65□□□□□ -0.86
USP4-209ENST00000475873 CCDC88BA6NC98 1476 aa9.64□□□□□ -0.87
USP4-209ENST00000475873 SOGA1O94964 1423 aa9.63□□□□□ -0.87
USP4-209ENST00000475873 GRIN2BQ13224 1484 aa9.61□□□□□ -0.87
USP4-209ENST00000475873 CEP170Q5SW79 1584 aa9.6□□□□□ -0.87
USP4-209ENST00000475873 WDR97A6NE52 1622 aa9.6□□□□□ -0.87
USP4-209ENST00000475873 KDM6BO15054 1643 aa9.6□□□□□ -0.87
USP4-209ENST00000475873 ABCC10Q5T3U5 1492 aa9.59□□□□□ -0.87
USP4-209ENST00000475873 FBXO41Q8TF61 875 aa9.58□□□□□ -0.88
USP4-209ENST00000475873 ADGRL1O94910 1474 aa9.58□□□□□ -0.88
USP4-209ENST00000475873 FGD5Q6ZNL6 1462 aa9.58□□□□□ -0.88
USP4-209ENST00000475873 DIP2BQ9P265 1576 aa9.58□□□□□ -0.88
USP4-209ENST00000475873 FAM69CQ0P6D2 419 aa9.57□□□□□ -0.88
USP4-209ENST00000475873 SHROOM2Q13796 1616 aa9.56□□□□□ -0.88
USP4-209ENST00000475873 PBRM1Q86U86 1689 aa9.55□□□□□ -0.88
USP4-209ENST00000475873 NUP160Q12769 1436 aa9.53□□□□□ -0.88
USP4-209ENST00000475873 LMTK3Q96Q04 1460 aa9.53□□□□□ -0.88
USP4-209ENST00000475873 TSPOAP1O95153 1857 aa9.52□□□□□ -0.89
USP4-209ENST00000475873 MAPKBP1O60336 1514 aa9.51□□□□□ -0.89
USP4-209ENST00000475873 CUX1P39880 1505 aa9.51□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms