RNA–Protein interactions for RNA: ENST00000475664.1

MCF2L2-209, Transcript of MCF.2 cell line derived transforming sequence-like 2, humanhuman

TSL 3

Gene MCF2L2, Length 460 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L2-209ENST00000475664 NISCHQ9Y2I1 1504 aa53.01■■■■■ 6.08
MCF2L2-209ENST00000475664 CCDC180Q9P1Z9 1646 aa46.93■■■■■ 5.1
MCF2L2-209ENST00000475664 ABCC9O60706 1549 aa45.27■■■■■ 4.84
MCF2L2-209ENST00000475664 ZCCHC6Q5VYS8 1495 aaKnown RBP44.3■■■■■ 4.68
MCF2L2-209ENST00000475664 NACADO15069 1562 aa43.93■■■■■ 4.62
MCF2L2-209ENST00000475664 DCAF1Q9Y4B6 1507 aa43.91■■■■■ 4.62
MCF2L2-209ENST00000475664 DCAF8L2P0C7V8 631 aa43.9■■■■■ 4.62
MCF2L2-209ENST00000475664 MYO15BQ96JP2 1530 aa43.88■■■■■ 4.61
MCF2L2-209ENST00000475664 RB1CC1Q8TDY2 1594 aa43.84■■■■■ 4.61
MCF2L2-209ENST00000475664 UNC13AQ9UPW8 1703 aa42.94■■■■■ 4.46
MCF2L2-209ENST00000475664 SCRIBQ14160 1630 aa42.82■■■■■ 4.45
MCF2L2-209ENST00000475664 BICRAQ9NZM4 1560 aa42.53■■■■■ 4.4
MCF2L2-209ENST00000475664 PABPN1Q86U42 306 aaKnown RBP eCLIP42.36■■■■■ 4.37
MCF2L2-209ENST00000475664 SHROOM4Q9ULL8 1493 aa42.15■■■■■ 4.34
MCF2L2-209ENST00000475664 EIF4G1Q04637 1599 aaKnown RBP41.33■■■■■ 4.21
MCF2L2-209ENST00000475664 CECR2Q9BXF3 1484 aa41.22■■■■■ 4.19
MCF2L2-209ENST00000475664 BAZ1AQ9NRL2 1556 aaPredicted RBP41.04■■■■■ 4.16
MCF2L2-209ENST00000475664 SMARCA4P51532 1647 aa41.04■■■■■ 4.16
MCF2L2-209ENST00000475664 CC2D2AQ9P2K1 1620 aa41.02■■■■■ 4.16
MCF2L2-209ENST00000475664 DNAJC5BQ9UF47 199 aa41■■■■■ 4.15
MCF2L2-209ENST00000475664 MROH2BQ7Z745 1585 aa40.86■■■■■ 4.13
MCF2L2-209ENST00000475664 PEG3Q9GZU2 1588 aa40.64■■■■■ 4.1
MCF2L2-209ENST00000475664 ATAD2BQ9ULI0 1458 aa40.63■■■■■ 4.09
MCF2L2-209ENST00000475664 SMARCA2P51531 1590 aa40.61■■■■■ 4.09
MCF2L2-209ENST00000475664 RSF1Q96T23 1441 aaPredicted RBP40.59■■■■■ 4.09
MCF2L2-209ENST00000475664 NCAPD3P42695 1498 aa40.51■■■■■ 4.08
MCF2L2-209ENST00000475664 WIZO95785 1651 aa40.47■■■■■ 4.07
MCF2L2-209ENST00000475664 HMGXB3Q12766 1538 aa40.41■■■■■ 4.06
MCF2L2-209ENST00000475664 BAZ1BQ9UIG0 1483 aaKnown RBP40.32■■■■■ 4.04
MCF2L2-209ENST00000475664 TOP2AP11388 1531 aaKnown RBP40.07■■■■■ 4.01
MCF2L2-209ENST00000475664 SUPT5HO00267 1087 aaKnown RBP39.91■■■■□ 3.98
MCF2L2-209ENST00000475664 CCDC88BA6NC98 1476 aa39.56■■■■□ 3.92
MCF2L2-209ENST00000475664 LAMC3Q9Y6N6 1575 aa39.38■■■■□ 3.89
MCF2L2-209ENST00000475664 NESP48681 1621 aa39.36■■■■□ 3.89
MCF2L2-209ENST00000475664 CADPSQ9ULU8 1353 aa39.33■■■■□ 3.89
MCF2L2-209ENST00000475664 CFTRP13569 1480 aa39.26■■■■□ 3.88
MCF2L2-209ENST00000475664 PRDM2Q13029 1718 aa39.11■■■■□ 3.85
MCF2L2-209ENST00000475664 PDS5BQ9NTI5 1447 aa39.03■■■■□ 3.84
MCF2L2-209ENST00000475664 KIF21AQ7Z4S6 1674 aa38.97■■■■□ 3.83
MCF2L2-209ENST00000475664 ERCC6Q03468 1493 aa38.95■■■■□ 3.83
MCF2L2-209ENST00000475664 FANCD2Q9BXW9 1451 aa38.91■■■■□ 3.82
MCF2L2-209ENST00000475664 CEP164Q9UPV0 1460 aa38.8■■■■□ 3.8
MCF2L2-209ENST00000475664 THOC2Q8NI27 1593 aaKnown RBP38.7■■■■□ 3.79
MCF2L2-209ENST00000475664 MRC2Q9UBG0 1479 aa38.64■■■■□ 3.78
MCF2L2-209ENST00000475664 WDR62O43379 1518 aa38.52■■■■□ 3.76
MCF2L2-209ENST00000475664 URB2Q14146 1524 aaKnown RBP38.51■■■■□ 3.76
MCF2L2-209ENST00000475664 DNMBPQ6XZF7 1577 aa38.4■■■■□ 3.74
MCF2L2-209ENST00000475664 ABCC8Q09428 1581 aa38.37■■■■□ 3.73
MCF2L2-209ENST00000475664 TOPBP1Q92547 1522 aa38.37■■■■□ 3.73
MCF2L2-209ENST00000475664 CUX2O14529 1486 aa38.36■■■■□ 3.73
MCF2L2-209ENST00000475664 CUX1P39880 1505 aa38.31■■■■□ 3.72
MCF2L2-209ENST00000475664 WRNQ14191 1432 aaPredicted RBP eCLIP38.24■■■■□ 3.71
MCF2L2-209ENST00000475664 SYNJ1O43426 1573 aa38.17■■■■□ 3.7
MCF2L2-209ENST00000475664 BIVM-ERCC5R4GMW8 1640 aa38.16■■■■□ 3.7
MCF2L2-209ENST00000475664 TOP2BQ02880 1626 aa38.14■■■■□ 3.7
MCF2L2-209ENST00000475664 POLA1P09884 1462 aaPredicted RBP38.08■■■■□ 3.69
MCF2L2-209ENST00000475664 FGD5Q6ZNL6 1462 aa38.07■■■■□ 3.68
MCF2L2-209ENST00000475664 IFT140Q96RY7 1462 aa37.96■■■■□ 3.67
MCF2L2-209ENST00000475664 TARBP1Q13395 1621 aaKnown RBP37.94■■■■□ 3.66
MCF2L2-209ENST00000475664 SOGA1O94964 1423 aa37.89■■■■□ 3.66
MCF2L2-209ENST00000475664 RAD54L2Q9Y4B4 1467 aa37.89■■■■□ 3.66
MCF2L2-209ENST00000475664 WDR97A6NE52 1622 aa37.81■■■■□ 3.64
MCF2L2-209ENST00000475664 ZNF608Q9ULD9 1512 aaPredicted RBP37.76■■■■□ 3.63
MCF2L2-209ENST00000475664 ABCA10Q8WWZ4 1543 aa37.74■■■■□ 3.63
MCF2L2-209ENST00000475664 EIF4G3O43432 1585 aaKnown RBP37.68■■■■□ 3.62
MCF2L2-209ENST00000475664 TRIM41Q8WV44 630 aa37.67■■■■□ 3.62
MCF2L2-209ENST00000475664 CHIC1Q5VXU3 224 aa37.63■■■■□ 3.61
MCF2L2-209ENST00000475664 TDRD9Q8NDG6 1382 aaKnown RBP37.6■■■■□ 3.61
MCF2L2-209ENST00000475664 AQRO60306 1485 aaKnown RBP eCLIP37.58■■■■□ 3.61
MCF2L2-209ENST00000475664 ABCA5Q8WWZ7 1642 aa37.58■■■■□ 3.61
MCF2L2-209ENST00000475664 GAPVD1Q14C86 1478 aa37.49■■■■□ 3.59
MCF2L2-209ENST00000475664 PBRM1Q86U86 1689 aa37.44■■■■□ 3.58
MCF2L2-209ENST00000475664 GRIN2BQ13224 1484 aa37.4■■■■□ 3.58
MCF2L2-209ENST00000475664 KIF27Q86VH2 1401 aa37.39■■■■□ 3.58
MCF2L2-209ENST00000475664 ERICH3Q5RHP9 1530 aa37.3■■■■□ 3.56
MCF2L2-209ENST00000475664 SNAPC4Q5SXM2 1469 aa37.29■■■■□ 3.56
MCF2L2-209ENST00000475664 MAGI1Q96QZ7 1491 aaPredicted RBP37.26■■■■□ 3.56
MCF2L2-209ENST00000475664 RUSC2Q8N2Y8 1516 aa37.26■■■■□ 3.55
MCF2L2-209ENST00000475664 ADAMTS12P58397 1594 aa37.17■■■■□ 3.54
MCF2L2-209ENST00000475664 IGF1RP08069 1367 aa37.16■■■■□ 3.54
MCF2L2-209ENST00000475664 CHD1O14646 1710 aa37.1■■■■□ 3.53
MCF2L2-209ENST00000475664 SYNJ2O15056 1496 aa37.1■■■■□ 3.53
MCF2L2-209ENST00000475664 CUL7Q14999 1698 aa37.09■■■■□ 3.53
MCF2L2-209ENST00000475664 FHAD1B1AJZ9 1412 aa37.07■■■■□ 3.52
MCF2L2-209ENST00000475664 EEA1Q15075 1411 aa37.07■■■■□ 3.52
MCF2L2-209ENST00000475664 CHMP7Q8WUX9 453 aaPredicted RBP36.96■■■■□ 3.51
MCF2L2-209ENST00000475664 FBLN2P98095 1184 aa36.95■■■■□ 3.51
MCF2L2-209ENST00000475664 CARMIL1Q5VZK9 1371 aa36.94■■■■□ 3.5
MCF2L2-209ENST00000475664 GRIN2AQ12879 1464 aa36.94■■■■□ 3.5
MCF2L2-209ENST00000475664 CSRNP3Q8WYN3 585 aa36.89■■■■□ 3.5
MCF2L2-209ENST00000475664 FAM9AQ8IZU1 332 aaPredicted RBP36.87■■■■□ 3.49
MCF2L2-209ENST00000475664 PRXQ9BXM0 1461 aa36.85■■■■□ 3.49
MCF2L2-209ENST00000475664 OSCARQ8IYS5 282 aa36.81■■■■□ 3.48
MCF2L2-209ENST00000475664 RAPGEF2Q9Y4G8 1499 aa36.81■■■■□ 3.48
MCF2L2-209ENST00000475664 CEP170Q5SW79 1584 aa36.76■■■■□ 3.48
MCF2L2-209ENST00000475664 NUP160Q12769 1436 aa36.76■■■■□ 3.47
MCF2L2-209ENST00000475664 KIF21BO75037 1637 aa36.7■■■■□ 3.47
MCF2L2-209ENST00000475664 CLASP1Q7Z460 1538 aa36.69■■■■□ 3.46
MCF2L2-209ENST00000475664 KIAA0586Q9BVV6 1533 aa36.53■■■■□ 3.44
MCF2L2-209ENST00000475664 CTTNBP2Q8WZ74 1663 aa36.51■■■■□ 3.44
Retrieved 100 of 20,778 RNA–protein pairs in 85.1 ms