RNA–Protein interactions for RNA: ENST00000474644.1

COL1A1-204, Transcript of collagen type I alpha 1 chain, humanhuman

TSL 3

Gene COL1A1, Length 640 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL1A1-204ENST00000474644 NISCHQ9Y2I1 1504 aa37.87■■■■□ 3.65
COL1A1-204ENST00000474644 CCDC180Q9P1Z9 1646 aa33.55■■■□□ 2.96
COL1A1-204ENST00000474644 ABCC9O60706 1549 aa32.54■■■□□ 2.8
COL1A1-204ENST00000474644 ZCCHC6Q5VYS8 1495 aaKnown RBP31.64■■■□□ 2.66
COL1A1-204ENST00000474644 NACADO15069 1562 aa31.46■■■□□ 2.63
COL1A1-204ENST00000474644 RB1CC1Q8TDY2 1594 aa31.43■■■□□ 2.62
COL1A1-204ENST00000474644 DCAF8L2P0C7V8 631 aa31.42■■■□□ 2.62
COL1A1-204ENST00000474644 MYO15BQ96JP2 1530 aa31.38■■■□□ 2.61
COL1A1-204ENST00000474644 DCAF1Q9Y4B6 1507 aa31.35■■■□□ 2.61
COL1A1-204ENST00000474644 UNC13AQ9UPW8 1703 aa30.7■■■□□ 2.51
COL1A1-204ENST00000474644 SCRIBQ14160 1630 aa30.65■■■□□ 2.5
COL1A1-204ENST00000474644 BICRAQ9NZM4 1560 aa30.49■■■□□ 2.47
COL1A1-204ENST00000474644 PABPN1Q86U42 306 aaKnown RBP eCLIP30.42■■■□□ 2.46
COL1A1-204ENST00000474644 SHROOM4Q9ULL8 1493 aa30.2■■■□□ 2.43
COL1A1-204ENST00000474644 DNAJC5BQ9UF47 199 aa30.1■■■□□ 2.41
COL1A1-204ENST00000474644 EIF4G1Q04637 1599 aaKnown RBP29.65■■■□□ 2.34
COL1A1-204ENST00000474644 CECR2Q9BXF3 1484 aa29.47■■■□□ 2.31
COL1A1-204ENST00000474644 CC2D2AQ9P2K1 1620 aa29.45■■■□□ 2.3
COL1A1-204ENST00000474644 BAZ1AQ9NRL2 1556 aaPredicted RBP29.34■■■□□ 2.29
COL1A1-204ENST00000474644 SMARCA4P51532 1647 aa29.34■■■□□ 2.29
COL1A1-204ENST00000474644 MROH2BQ7Z745 1585 aa29.2■■■□□ 2.26
COL1A1-204ENST00000474644 ATAD2BQ9ULI0 1458 aa29.09■■■□□ 2.25
COL1A1-204ENST00000474644 SMARCA2P51531 1590 aa29.07■■■□□ 2.24
COL1A1-204ENST00000474644 PEG3Q9GZU2 1588 aa29.05■■■□□ 2.24
COL1A1-204ENST00000474644 NCAPD3P42695 1498 aa29.02■■■□□ 2.24
COL1A1-204ENST00000474644 RSF1Q96T23 1441 aaPredicted RBP28.96■■■□□ 2.23
COL1A1-204ENST00000474644 HMGXB3Q12766 1538 aa28.94■■■□□ 2.22
COL1A1-204ENST00000474644 WIZO95785 1651 aa28.89■■■□□ 2.21
COL1A1-204ENST00000474644 BAZ1BQ9UIG0 1483 aaKnown RBP28.87■■■□□ 2.21
COL1A1-204ENST00000474644 TOP2AP11388 1531 aaKnown RBP28.63■■■□□ 2.17
COL1A1-204ENST00000474644 SUPT5HO00267 1087 aaKnown RBP28.39■■■□□ 2.14
COL1A1-204ENST00000474644 NESP48681 1621 aa28.25■■■□□ 2.11
COL1A1-204ENST00000474644 CCDC88BA6NC98 1476 aa28.25■■■□□ 2.11
COL1A1-204ENST00000474644 LAMC3Q9Y6N6 1575 aa28.21■■■□□ 2.11
COL1A1-204ENST00000474644 CADPSQ9ULU8 1353 aa28.18■■■□□ 2.1
COL1A1-204ENST00000474644 CFTRP13569 1480 aa28.09■■■□□ 2.09
COL1A1-204ENST00000474644 ERCC6Q03468 1493 aa28.02■■■□□ 2.08
COL1A1-204ENST00000474644 PDS5BQ9NTI5 1447 aa27.99■■■□□ 2.07
COL1A1-204ENST00000474644 KIF21AQ7Z4S6 1674 aa27.93■■■□□ 2.06
COL1A1-204ENST00000474644 PRDM2Q13029 1718 aa27.89■■■□□ 2.06
COL1A1-204ENST00000474644 FANCD2Q9BXW9 1451 aa27.88■■■□□ 2.05
COL1A1-204ENST00000474644 CEP164Q9UPV0 1460 aa27.82■■■□□ 2.04
COL1A1-204ENST00000474644 THOC2Q8NI27 1593 aaKnown RBP27.79■■■□□ 2.04
COL1A1-204ENST00000474644 MRC2Q9UBG0 1479 aa27.73■■■□□ 2.03
COL1A1-204ENST00000474644 CUX2O14529 1486 aa27.71■■■□□ 2.03
COL1A1-204ENST00000474644 WDR62O43379 1518 aa27.64■■■□□ 2.02
COL1A1-204ENST00000474644 URB2Q14146 1524 aaKnown RBP27.6■■■□□ 2.01
COL1A1-204ENST00000474644 DNAJC5Q9H3Z4 198 aa27.58■■■□□ 2.01
COL1A1-204ENST00000474644 DNMBPQ6XZF7 1577 aa27.48■■□□□ 1.99
COL1A1-204ENST00000474644 TOPBP1Q92547 1522 aa27.47■■□□□ 1.99
COL1A1-204ENST00000474644 ABCC8Q09428 1581 aa27.44■■□□□ 1.98
COL1A1-204ENST00000474644 CUX1P39880 1505 aa27.38■■□□□ 1.97
COL1A1-204ENST00000474644 WRNQ14191 1432 aaPredicted RBP eCLIP27.3■■□□□ 1.96
COL1A1-204ENST00000474644 POLA1P09884 1462 aaPredicted RBP27.26■■□□□ 1.95
COL1A1-204ENST00000474644 SYNJ1O43426 1573 aa27.24■■□□□ 1.95
COL1A1-204ENST00000474644 FGD5Q6ZNL6 1462 aa27.24■■□□□ 1.95
COL1A1-204ENST00000474644 IFT140Q96RY7 1462 aa27.22■■□□□ 1.95
COL1A1-204ENST00000474644 TOP2BQ02880 1626 aa27.22■■□□□ 1.95
COL1A1-204ENST00000474644 BIVM-ERCC5R4GMW8 1640 aa27.22■■□□□ 1.95
COL1A1-204ENST00000474644 TARBP1Q13395 1621 aaKnown RBP27.16■■□□□ 1.94
COL1A1-204ENST00000474644 RAD54L2Q9Y4B4 1467 aa27.13■■□□□ 1.93
COL1A1-204ENST00000474644 SOGA1O94964 1423 aa27.11■■□□□ 1.93
COL1A1-204ENST00000474644 ZNF608Q9ULD9 1512 aaPredicted RBP27.08■■□□□ 1.93
COL1A1-204ENST00000474644 WDR97A6NE52 1622 aa27.02■■□□□ 1.92
COL1A1-204ENST00000474644 EIF4G3O43432 1585 aaKnown RBP27.01■■□□□ 1.92
COL1A1-204ENST00000474644 ABCA10Q8WWZ4 1543 aa26.98■■□□□ 1.91
COL1A1-204ENST00000474644 AQRO60306 1485 aaKnown RBP eCLIP26.94■■□□□ 1.9
COL1A1-204ENST00000474644 TDRD9Q8NDG6 1382 aaKnown RBP26.94■■□□□ 1.9
COL1A1-204ENST00000474644 ABCA5Q8WWZ7 1642 aa26.88■■□□□ 1.89
COL1A1-204ENST00000474644 GAPVD1Q14C86 1478 aa26.82■■□□□ 1.88
COL1A1-204ENST00000474644 TRIM41Q8WV44 630 aa26.79■■□□□ 1.88
COL1A1-204ENST00000474644 GRIN2BQ13224 1484 aa26.79■■□□□ 1.88
COL1A1-204ENST00000474644 PBRM1Q86U86 1689 aa26.77■■□□□ 1.88
COL1A1-204ENST00000474644 SNAPC4Q5SXM2 1469 aa26.74■■□□□ 1.87
COL1A1-204ENST00000474644 MAGI1Q96QZ7 1491 aaPredicted RBP26.69■■□□□ 1.86
COL1A1-204ENST00000474644 KIF27Q86VH2 1401 aa26.69■■□□□ 1.86
COL1A1-204ENST00000474644 CHIC1Q5VXU3 224 aa26.67■■□□□ 1.86
COL1A1-204ENST00000474644 ERICH3Q5RHP9 1530 aa26.66■■□□□ 1.86
COL1A1-204ENST00000474644 ADAMTS12P58397 1594 aa26.61■■□□□ 1.85
COL1A1-204ENST00000474644 SYNJ2O15056 1496 aa26.59■■□□□ 1.85
COL1A1-204ENST00000474644 CHD1O14646 1710 aa26.58■■□□□ 1.85
COL1A1-204ENST00000474644 RUSC2Q8N2Y8 1516 aa26.55■■□□□ 1.84
COL1A1-204ENST00000474644 IGF1RP08069 1367 aa26.53■■□□□ 1.84
COL1A1-204ENST00000474644 FHAD1B1AJZ9 1412 aa26.53■■□□□ 1.84
COL1A1-204ENST00000474644 FBLN2P98095 1184 aa26.52■■□□□ 1.84
COL1A1-204ENST00000474644 CHMP7Q8WUX9 453 aaPredicted RBP26.49■■□□□ 1.83
COL1A1-204ENST00000474644 CUL7Q14999 1698 aa26.48■■□□□ 1.83
COL1A1-204ENST00000474644 OSCARQ8IYS5 282 aa26.46■■□□□ 1.83
COL1A1-204ENST00000474644 GRIN2AQ12879 1464 aa26.46■■□□□ 1.83
COL1A1-204ENST00000474644 CARMIL1Q5VZK9 1371 aa26.37■■□□□ 1.81
COL1A1-204ENST00000474644 EEA1Q15075 1411 aa26.37■■□□□ 1.81
COL1A1-204ENST00000474644 NUP160Q12769 1436 aa26.33■■□□□ 1.81
COL1A1-204ENST00000474644 CLASP1Q7Z460 1538 aa26.33■■□□□ 1.81
COL1A1-204ENST00000474644 CEP170Q5SW79 1584 aa26.33■■□□□ 1.8
COL1A1-204ENST00000474644 PRXQ9BXM0 1461 aa26.27■■□□□ 1.8
COL1A1-204ENST00000474644 RAPGEF2Q9Y4G8 1499 aa26.27■■□□□ 1.8
COL1A1-204ENST00000474644 CSRNP3Q8WYN3 585 aa26.25■■□□□ 1.79
COL1A1-204ENST00000474644 FAM9AQ8IZU1 332 aaPredicted RBP26.24■■□□□ 1.79
COL1A1-204ENST00000474644 RIMBP3CA6NJZ7 1639 aa26.2■■□□□ 1.78
COL1A1-204ENST00000474644 RIMBP3BA6NNM3 1639 aa26.2■■□□□ 1.78
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms