RNA–Protein interactions for RNA: ENST00000474637.5

GAPVD1-216, Transcript of GTPase activating protein and VPS9 domains 1, humanhuman

TSL 2

Gene GAPVD1, Length 2,545 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GAPVD1-216ENST00000474637 NISCHQ9Y2I1 1504 aa9.88□□□□□ -0.83
GAPVD1-216ENST00000474637 CCDC180Q9P1Z9 1646 aa8.81□□□□□ -1
GAPVD1-216ENST00000474637 AEBP2Q6ZN18 517 aaPredicted RBP8.74□□□□□ -1.01
GAPVD1-216ENST00000474637 CHIC1Q5VXU3 224 aa8.58□□□□□ -1.04
GAPVD1-216ENST00000474637 ABCC9O60706 1549 aa8.5□□□□□ -1.05
GAPVD1-216ENST00000474637 NACADO15069 1562 aa8.26□□□□□ -1.09
GAPVD1-216ENST00000474637 RB1CC1Q8TDY2 1594 aa8.26□□□□□ -1.09
GAPVD1-216ENST00000474637 MYO15BQ96JP2 1530 aa8.25□□□□□ -1.09
GAPVD1-216ENST00000474637 ZCCHC6Q5VYS8 1495 aaKnown RBP8.24□□□□□ -1.09
GAPVD1-216ENST00000474637 DCAF1Q9Y4B6 1507 aa8.22□□□□□ -1.09
GAPVD1-216ENST00000474637 DCAF8L2P0C7V8 631 aa8.19□□□□□ -1.1
GAPVD1-216ENST00000474637 UNC13AQ9UPW8 1703 aa8.04□□□□□ -1.12
GAPVD1-216ENST00000474637 SCRIBQ14160 1630 aa7.99□□□□□ -1.13
GAPVD1-216ENST00000474637 BICRAQ9NZM4 1560 aa7.97□□□□□ -1.13
GAPVD1-216ENST00000474637 SHROOM4Q9ULL8 1493 aa7.96□□□□□ -1.13
GAPVD1-216ENST00000474637 PABPN1Q86U42 306 aaKnown RBP eCLIP7.94□□□□□ -1.14
GAPVD1-216ENST00000474637 EIF4G1Q04637 1599 aaKnown RBP7.76□□□□□ -1.17
GAPVD1-216ENST00000474637 DNAJC5BQ9UF47 199 aa7.73□□□□□ -1.17
GAPVD1-216ENST00000474637 CC2D2AQ9P2K1 1620 aa7.72□□□□□ -1.17
GAPVD1-216ENST00000474637 BAZ1AQ9NRL2 1556 aaPredicted RBP7.67□□□□□ -1.18
GAPVD1-216ENST00000474637 SMARCA4P51532 1647 aa7.66□□□□□ -1.18
GAPVD1-216ENST00000474637 CECR2Q9BXF3 1484 aa7.66□□□□□ -1.18
GAPVD1-216ENST00000474637 SMARCA2P51531 1590 aa7.62□□□□□ -1.19
GAPVD1-216ENST00000474637 PHF23Q9BUL5 403 aaPredicted RBP7.61□□□□□ -1.19
GAPVD1-216ENST00000474637 NCAPD3P42695 1498 aa7.6□□□□□ -1.19
GAPVD1-216ENST00000474637 PEG3Q9GZU2 1588 aa7.6□□□□□ -1.19
GAPVD1-216ENST00000474637 ATAD2BQ9ULI0 1458 aa7.6□□□□□ -1.19
GAPVD1-216ENST00000474637 MROH2BQ7Z745 1585 aa7.59□□□□□ -1.19
GAPVD1-216ENST00000474637 HMGXB3Q12766 1538 aa7.59□□□□□ -1.19
GAPVD1-216ENST00000474637 BAZ1BQ9UIG0 1483 aaKnown RBP7.55□□□□□ -1.2
GAPVD1-216ENST00000474637 RSF1Q96T23 1441 aaPredicted RBP7.53□□□□□ -1.2
GAPVD1-216ENST00000474637 WIZO95785 1651 aa7.51□□□□□ -1.21
GAPVD1-216ENST00000474637 TOP2AP11388 1531 aaKnown RBP7.47□□□□□ -1.21
GAPVD1-216ENST00000474637 LAMC3Q9Y6N6 1575 aa7.41□□□□□ -1.22
GAPVD1-216ENST00000474637 CADPSQ9ULU8 1353 aa7.38□□□□□ -1.23
GAPVD1-216ENST00000474637 NESP48681 1621 aa7.36□□□□□ -1.23
GAPVD1-216ENST00000474637 CCDC88BA6NC98 1476 aa7.36□□□□□ -1.23
GAPVD1-216ENST00000474637 ERCC6Q03468 1493 aa7.36□□□□□ -1.23
GAPVD1-216ENST00000474637 PDS5BQ9NTI5 1447 aa7.36□□□□□ -1.23
GAPVD1-216ENST00000474637 CFTRP13569 1480 aa7.35□□□□□ -1.23
GAPVD1-216ENST00000474637 SUPT5HO00267 1087 aaKnown RBP7.34□□□□□ -1.23
GAPVD1-216ENST00000474637 SENP3Q9H4L4 574 aaPredicted RBP7.33□□□□□ -1.24
GAPVD1-216ENST00000474637 PRDM2Q13029 1718 aa7.33□□□□□ -1.24
GAPVD1-216ENST00000474637 KIF21AQ7Z4S6 1674 aa7.31□□□□□ -1.24
GAPVD1-216ENST00000474637 CUX2O14529 1486 aa7.29□□□□□ -1.24
GAPVD1-216ENST00000474637 FANCD2Q9BXW9 1451 aa7.29□□□□□ -1.24
GAPVD1-216ENST00000474637 POTEDQ86YR6 584 aa7.29□□□□□ -1.24
GAPVD1-216ENST00000474637 CEP164Q9UPV0 1460 aa7.28□□□□□ -1.24
GAPVD1-216ENST00000474637 THOC2Q8NI27 1593 aaKnown RBP7.28□□□□□ -1.24
GAPVD1-216ENST00000474637 MRC2Q9UBG0 1479 aa7.27□□□□□ -1.25
GAPVD1-216ENST00000474637 WDR62O43379 1518 aa7.24□□□□□ -1.25
GAPVD1-216ENST00000474637 ABCC8Q09428 1581 aa7.22□□□□□ -1.25
GAPVD1-216ENST00000474637 URB2Q14146 1524 aaKnown RBP7.2□□□□□ -1.26
GAPVD1-216ENST00000474637 DNMBPQ6XZF7 1577 aa7.19□□□□□ -1.26
GAPVD1-216ENST00000474637 TOPBP1Q92547 1522 aa7.18□□□□□ -1.26
GAPVD1-216ENST00000474637 IFT140Q96RY7 1462 aa7.15□□□□□ -1.27
GAPVD1-216ENST00000474637 CUX1P39880 1505 aa7.13□□□□□ -1.27
GAPVD1-216ENST00000474637 POLA1P09884 1462 aaPredicted RBP7.11□□□□□ -1.27
GAPVD1-216ENST00000474637 BIVM-ERCC5R4GMW8 1640 aa7.11□□□□□ -1.27
GAPVD1-216ENST00000474637 WRNQ14191 1432 aaPredicted RBP eCLIP7.11□□□□□ -1.27
GAPVD1-216ENST00000474637 WDR97A6NE52 1622 aa7.1□□□□□ -1.27
GAPVD1-216ENST00000474637 TOP2BQ02880 1626 aa7.1□□□□□ -1.27
GAPVD1-216ENST00000474637 FGD5Q6ZNL6 1462 aa7.1□□□□□ -1.27
GAPVD1-216ENST00000474637 TARBP1Q13395 1621 aaKnown RBP7.1□□□□□ -1.27
GAPVD1-216ENST00000474637 SOGA1O94964 1423 aa7.09□□□□□ -1.27
GAPVD1-216ENST00000474637 SYNJ1O43426 1573 aa7.08□□□□□ -1.28
GAPVD1-216ENST00000474637 EIF4G3O43432 1585 aaKnown RBP7.06□□□□□ -1.28
GAPVD1-216ENST00000474637 RAD54L2Q9Y4B4 1467 aa7.06□□□□□ -1.28
GAPVD1-216ENST00000474637 ZNF608Q9ULD9 1512 aaPredicted RBP7.06□□□□□ -1.28
GAPVD1-216ENST00000474637 ABCA10Q8WWZ4 1543 aa7.05□□□□□ -1.28
GAPVD1-216ENST00000474637 AQRO60306 1485 aaKnown RBP eCLIP7.03□□□□□ -1.282e-6■■■■■ 32.9
GAPVD1-216ENST00000474637 TDRD9Q8NDG6 1382 aaKnown RBP7.02□□□□□ -1.29
GAPVD1-216ENST00000474637 GRIN2BQ13224 1484 aa7.02□□□□□ -1.29
GAPVD1-216ENST00000474637 ABCA5Q8WWZ7 1642 aa7.02□□□□□ -1.29
GAPVD1-216ENST00000474637 GAPVD1Q14C86 1478 aa7.01□□□□□ -1.29
GAPVD1-216ENST00000474637 PBRM1Q86U86 1689 aa7.01□□□□□ -1.29
GAPVD1-216ENST00000474637 PLPPR3Q6T4P5 718 aa7.01□□□□□ -1.29
GAPVD1-216ENST00000474637 MAGI1Q96QZ7 1491 aaPredicted RBP7.01□□□□□ -1.29
GAPVD1-216ENST00000474637 SNAPC4Q5SXM2 1469 aa6.98□□□□□ -1.29
GAPVD1-216ENST00000474637 ERICH3Q5RHP9 1530 aa6.98□□□□□ -1.29
GAPVD1-216ENST00000474637 OSCARQ8IYS5 282 aa6.97□□□□□ -1.29
GAPVD1-216ENST00000474637 DNAJC5Q9H3Z4 198 aa6.97□□□□□ -1.29
GAPVD1-216ENST00000474637 KIF27Q86VH2 1401 aa6.97□□□□□ -1.29
GAPVD1-216ENST00000474637 SYNJ2O15056 1496 aa6.97□□□□□ -1.29
GAPVD1-216ENST00000474637 CHD1O14646 1710 aa6.96□□□□□ -1.29
GAPVD1-216ENST00000474637 TRIM41Q8WV44 630 aa6.96□□□□□ -1.3
GAPVD1-216ENST00000474637 ADAMTS12P58397 1594 aa6.95□□□□□ -1.3
GAPVD1-216ENST00000474637 CHMP7Q8WUX9 453 aaPredicted RBP6.95□□□□□ -1.3
GAPVD1-216ENST00000474637 FHAD1B1AJZ9 1412 aa6.94□□□□□ -1.3
GAPVD1-216ENST00000474637 CUL7Q14999 1698 aa6.94□□□□□ -1.3
GAPVD1-216ENST00000474637 FBLN2P98095 1184 aa6.93□□□□□ -1.3
GAPVD1-216ENST00000474637 GRIN2AQ12879 1464 aa6.91□□□□□ -1.3
GAPVD1-216ENST00000474637 IGF1RP08069 1367 aa6.91□□□□□ -1.3
GAPVD1-216ENST00000474637 CLASP1Q7Z460 1538 aa6.89□□□□□ -1.31
GAPVD1-216ENST00000474637 EEA1Q15075 1411 aa6.89□□□□□ -1.31
GAPVD1-216ENST00000474637 NUP160Q12769 1436 aa6.89□□□□□ -1.31
GAPVD1-216ENST00000474637 CARMIL1Q5VZK9 1371 aa6.88□□□□□ -1.31
GAPVD1-216ENST00000474637 CEP170Q5SW79 1584 aa6.87□□□□□ -1.31
GAPVD1-216ENST00000474637 RAPGEF2Q9Y4G8 1499 aa6.86□□□□□ -1.31
GAPVD1-216ENST00000474637 RUSC2Q8N2Y8 1516 aa6.86□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms