RNA–Protein interactions for RNA: ENST00000474572.6

USP39-214, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 4

Gene USP39, Length 293 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-214ENST00000474572 NISCHQ9Y2I1 1504 aa21.79■■□□□ 1.08
USP39-214ENST00000474572 CCDC180Q9P1Z9 1646 aa18.95■□□□□ 0.62
USP39-214ENST00000474572 ZCCHC6Q5VYS8 1495 aaKnown RBP18.4■□□□□ 0.54
USP39-214ENST00000474572 DCAF1Q9Y4B6 1507 aa18.09■□□□□ 0.49
USP39-214ENST00000474572 SHROOM4Q9ULL8 1493 aa17.8■□□□□ 0.44
USP39-214ENST00000474572 MYO15BQ96JP2 1530 aa17.77■□□□□ 0.43
USP39-214ENST00000474572 DCAF8L2P0C7V8 631 aa17.58■□□□□ 0.4
USP39-214ENST00000474572 NACADO15069 1562 aa17.5■□□□□ 0.39
USP39-214ENST00000474572 ABCC9O60706 1549 aa17.44■□□□□ 0.38
USP39-214ENST00000474572 SCRIBQ14160 1630 aa17.34■□□□□ 0.37
USP39-214ENST00000474572 RB1CC1Q8TDY2 1594 aa17.26■□□□□ 0.35
USP39-214ENST00000474572 SUPT5HO00267 1087 aaKnown RBP17.23■□□□□ 0.35
USP39-214ENST00000474572 UNC13AQ9UPW8 1703 aa17.01■□□□□ 0.31
USP39-214ENST00000474572 RSF1Q96T23 1441 aaPredicted RBP16.98■□□□□ 0.31
USP39-214ENST00000474572 CECR2Q9BXF3 1484 aa16.86■□□□□ 0.29
USP39-214ENST00000474572 MROH2BQ7Z745 1585 aa16.83■□□□□ 0.28
USP39-214ENST00000474572 BAZ1AQ9NRL2 1556 aaPredicted RBP16.8■□□□□ 0.28
USP39-214ENST00000474572 BICRAQ9NZM4 1560 aa16.78■□□□□ 0.28
USP39-214ENST00000474572 CHIC1Q5VXU3 224 aa16.77■□□□□ 0.28
USP39-214ENST00000474572 WIZO95785 1651 aa16.72■□□□□ 0.27
USP39-214ENST00000474572 SMARCA4P51532 1647 aa16.7■□□□□ 0.26
USP39-214ENST00000474572 TOP2AP11388 1531 aaKnown RBP16.58■□□□□ 0.24
USP39-214ENST00000474572 PEG3Q9GZU2 1588 aa16.54■□□□□ 0.24
USP39-214ENST00000474572 EIF4G1Q04637 1599 aaKnown RBP16.53■□□□□ 0.24
USP39-214ENST00000474572 SMARCA2P51531 1590 aa16.43■□□□□ 0.22
USP39-214ENST00000474572 PABPN1Q86U42 306 aaKnown RBP eCLIP16.43■□□□□ 0.22
USP39-214ENST00000474572 CCDC88BA6NC98 1476 aa16.35■□□□□ 0.21
USP39-214ENST00000474572 ATAD2BQ9ULI0 1458 aa16.3■□□□□ 0.2
USP39-214ENST00000474572 TRIM41Q8WV44 630 aa16.21■□□□□ 0.19
USP39-214ENST00000474572 BAZ1BQ9UIG0 1483 aaKnown RBP16.2■□□□□ 0.18
USP39-214ENST00000474572 HMGXB3Q12766 1538 aa16.19■□□□□ 0.18
USP39-214ENST00000474572 NCAPD3P42695 1498 aa16.13■□□□□ 0.17
USP39-214ENST00000474572 ABCC8Q09428 1581 aa16.11■□□□□ 0.17
USP39-214ENST00000474572 LOC105371045A0A1W2PR82 267 aa16.06■□□□□ 0.16
USP39-214ENST00000474572 WRNQ14191 1432 aaPredicted RBP eCLIP15.95■□□□□ 0.14
USP39-214ENST00000474572 SYNJ1O43426 1573 aa15.94■□□□□ 0.14
USP39-214ENST00000474572 EEA1Q15075 1411 aa15.94■□□□□ 0.14
USP39-214ENST00000474572 PRDM2Q13029 1718 aa15.92■□□□□ 0.14
USP39-214ENST00000474572 BIVM-ERCC5R4GMW8 1640 aa15.9■□□□□ 0.14
USP39-214ENST00000474572 CC2D2AQ9P2K1 1620 aa15.87■□□□□ 0.13
USP39-214ENST00000474572 FAM9AQ8IZU1 332 aaPredicted RBP15.87■□□□□ 0.13
USP39-214ENST00000474572 TOP2BQ02880 1626 aa15.86■□□□□ 0.13
USP39-214ENST00000474572 CFTRP13569 1480 aa15.85■□□□□ 0.13
USP39-214ENST00000474572 SOGA1O94964 1423 aa15.84■□□□□ 0.13
USP39-214ENST00000474572 RUSC2Q8N2Y8 1516 aa15.78■□□□□ 0.12
USP39-214ENST00000474572 KIF21BO75037 1637 aa15.76■□□□□ 0.11
USP39-214ENST00000474572 CUX1P39880 1505 aa15.72■□□□□ 0.11
USP39-214ENST00000474572 CSRNP3Q8WYN3 585 aa15.71■□□□□ 0.11
USP39-214ENST00000474572 TNIKQ9UKE5 1360 aa15.71■□□□□ 0.11
USP39-214ENST00000474572 GOLGA3Q08378 1498 aa15.71■□□□□ 0.1
USP39-214ENST00000474572 CEP164Q9UPV0 1460 aa15.68■□□□□ 0.1
USP39-214ENST00000474572 CADPSQ9ULU8 1353 aa15.68■□□□□ 0.1
USP39-214ENST00000474572 TRIM26Q12899 539 aaPredicted RBP15.63■□□□□ 0.09
USP39-214ENST00000474572 PCGF6Q9BYE7 350 aa15.63■□□□□ 0.09
USP39-214ENST00000474572 CEP162Q5TB80 1403 aa15.62■□□□□ 0.09
USP39-214ENST00000474572 ERICH3Q5RHP9 1530 aa15.58■□□□□ 0.09
USP39-214ENST00000474572 EHMT2Q96KQ7 1210 aa15.56■□□□□ 0.08
USP39-214ENST00000474572 LAMC3Q9Y6N6 1575 aa15.56■□□□□ 0.08
USP39-214ENST00000474572 PRXQ9BXM0 1461 aa15.55■□□□□ 0.08
USP39-214ENST00000474572 HRCP23327 699 aa15.53■□□□□ 0.08
USP39-214ENST00000474572 FANCD2Q9BXW9 1451 aa15.52■□□□□ 0.08
USP39-214ENST00000474572 RAPGEF2Q9Y4G8 1499 aa15.52■□□□□ 0.08
USP39-214ENST00000474572 KIF27Q86VH2 1401 aa15.51■□□□□ 0.07
USP39-214ENST00000474572 DNMBPQ6XZF7 1577 aa15.5■□□□□ 0.07
USP39-214ENST00000474572 FGD5Q6ZNL6 1462 aa15.47■□□□□ 0.07
USP39-214ENST00000474572 NESP48681 1621 aa15.44■□□□□ 0.06
USP39-214ENST00000474572 UBTFP17480 764 aaKnown RBP15.44■□□□□ 0.06
USP39-214ENST00000474572 TOPBP1Q92547 1522 aa15.42■□□□□ 0.06
USP39-214ENST00000474572 CLIP1P30622 1438 aa15.42■□□□□ 0.06
USP39-214ENST00000474572 WDR97A6NE52 1622 aa15.4■□□□□ 0.06
USP39-214ENST00000474572 CUX2O14529 1486 aa15.39■□□□□ 0.05
USP39-214ENST00000474572 ABCA10Q8WWZ4 1543 aa15.38■□□□□ 0.05
USP39-214ENST00000474572 VPS8Q8N3P4 1428 aa15.37■□□□□ 0.05
USP39-214ENST00000474572 POLA1P09884 1462 aaPredicted RBP15.36■□□□□ 0.05
USP39-214ENST00000474572 KIF21AQ7Z4S6 1674 aa15.35■□□□□ 0.05
USP39-214ENST00000474572 URB2Q14146 1524 aaKnown RBP15.34■□□□□ 0.05
USP39-214ENST00000474572 IGF1RP08069 1367 aa15.33■□□□□ 0.04
USP39-214ENST00000474572 PDS5BQ9NTI5 1447 aa15.33■□□□□ 0.04
USP39-214ENST00000474572 ARAP1Q96P48 1450 aa15.31■□□□□ 0.04
USP39-214ENST00000474572 CUL7Q14999 1698 aa15.3■□□□□ 0.04
USP39-214ENST00000474572 ABCA5Q8WWZ7 1642 aa15.28■□□□□ 0.04
USP39-214ENST00000474572 RAD54L2Q9Y4B4 1467 aa15.27■□□□□ 0.03
USP39-214ENST00000474572 DNAJC5BQ9UF47 199 aa15.26■□□□□ 0.03
USP39-214ENST00000474572 CARMIL1Q5VZK9 1371 aa15.25■□□□□ 0.03
USP39-214ENST00000474572 ARHGAP35Q9NRY4 1499 aa15.23■□□□□ 0.03
USP39-214ENST00000474572 TARBP1Q13395 1621 aaKnown RBP15.22■□□□□ 0.03
USP39-214ENST00000474572 PPARGC1BQ86YN6 1023 aaKnown RBP15.21■□□□□ 0.03
USP39-214ENST00000474572 CTTNBP2Q8WZ74 1663 aa15.19■□□□□ 0.02
USP39-214ENST00000474572 MRC2Q9UBG0 1479 aa15.17■□□□□ 0.02
USP39-214ENST00000474572 ZEB1P37275 1124 aaPredicted RBP15.17■□□□□ 0.02
USP39-214ENST00000474572 GAPVD1Q14C86 1478 aa15.13■□□□□ 0.01
USP39-214ENST00000474572 PBRM1Q86U86 1689 aa15.12■□□□□ 0.01
USP39-214ENST00000474572 EFCAB5A4FU69 1503 aa15.12■□□□□ 0.01
USP39-214ENST00000474572 WDR62O43379 1518 aa15.12■□□□□ 0.01
USP39-214ENST00000474572 MAP3K1Q13233 1512 aa15.12■□□□□ 0.01
USP39-214ENST00000474572 CFAP43Q8NDM7 1665 aa15.06■□□□□ 0
USP39-214ENST00000474572 TIAM1Q13009 1591 aa15.05■□□□□ -0
USP39-214ENST00000474572 SAMD9Q5K651 1589 aa15.05■□□□□ -0
USP39-214ENST00000474572 ADAMTS12P58397 1594 aa15.04■□□□□ -0
USP39-214ENST00000474572 TDRD9Q8NDG6 1382 aaKnown RBP15.04■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms