RNA–Protein interactions for RNA: ENST00000474564.1

COL12A1-206, Transcript of collagen type XII alpha 1 chain, humanhuman

TSL 3

Gene COL12A1, Length 499 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1-206ENST00000474564 NISCHQ9Y2I1 1504 aa23.81■■□□□ 1.4
COL12A1-206ENST00000474564 CCDC180Q9P1Z9 1646 aa20.94■□□□□ 0.94
COL12A1-206ENST00000474564 ABCC9O60706 1549 aa20.09■□□□□ 0.81
COL12A1-206ENST00000474564 DCAF8L2P0C7V8 631 aa19.94■□□□□ 0.78
COL12A1-206ENST00000474564 ZCCHC6Q5VYS8 1495 aaKnown RBP19.9■□□□□ 0.78
COL12A1-206ENST00000474564 DCAF1Q9Y4B6 1507 aa19.73■□□□□ 0.75
COL12A1-206ENST00000474564 MYO15BQ96JP2 1530 aa19.66■□□□□ 0.74
COL12A1-206ENST00000474564 NACADO15069 1562 aa19.65■□□□□ 0.74
COL12A1-206ENST00000474564 RB1CC1Q8TDY2 1594 aa19.57■□□□□ 0.72
COL12A1-206ENST00000474564 SHROOM4Q9ULL8 1493 aa19.16■□□□□ 0.66
COL12A1-206ENST00000474564 SCRIBQ14160 1630 aa19.14■□□□□ 0.66
COL12A1-206ENST00000474564 UNC13AQ9UPW8 1703 aa18.91■□□□□ 0.62
COL12A1-206ENST00000474564 PABPN1Q86U42 306 aaKnown RBP eCLIP18.9■□□□□ 0.62
COL12A1-206ENST00000474564 BICRAQ9NZM4 1560 aa18.79■□□□□ 0.6
COL12A1-206ENST00000474564 BAZ1AQ9NRL2 1556 aaPredicted RBP18.47■□□□□ 0.55
COL12A1-206ENST00000474564 CECR2Q9BXF3 1484 aa18.45■□□□□ 0.54
COL12A1-206ENST00000474564 SUPT5HO00267 1087 aaKnown RBP18.37■□□□□ 0.53
COL12A1-206ENST00000474564 SMARCA4P51532 1647 aa18.34■□□□□ 0.53
COL12A1-206ENST00000474564 EIF4G1Q04637 1599 aaKnown RBP18.34■□□□□ 0.53
COL12A1-206ENST00000474564 RSF1Q96T23 1441 aaPredicted RBP18.32■□□□□ 0.52
COL12A1-206ENST00000474564 MROH2BQ7Z745 1585 aa18.31■□□□□ 0.52
COL12A1-206ENST00000474564 SMARCA2P51531 1590 aa18.22■□□□□ 0.51
COL12A1-206ENST00000474564 ATAD2BQ9ULI0 1458 aa18.16■□□□□ 0.5
COL12A1-206ENST00000474564 PEG3Q9GZU2 1588 aa18.15■□□□□ 0.5
COL12A1-206ENST00000474564 CC2D2AQ9P2K1 1620 aa18.15■□□□□ 0.5
COL12A1-206ENST00000474564 WIZO95785 1651 aa18.13■□□□□ 0.49
COL12A1-206ENST00000474564 NCAPD3P42695 1498 aa18.11■□□□□ 0.49
COL12A1-206ENST00000474564 BAZ1BQ9UIG0 1483 aaKnown RBP18.1■□□□□ 0.49
COL12A1-206ENST00000474564 HMGXB3Q12766 1538 aa18.03■□□□□ 0.48
COL12A1-206ENST00000474564 TOP2AP11388 1531 aaKnown RBP18.03■□□□□ 0.48
COL12A1-206ENST00000474564 DNAJC5BQ9UF47 199 aa17.94■□□□□ 0.46
COL12A1-206ENST00000474564 CCDC88BA6NC98 1476 aa17.82■□□□□ 0.44
COL12A1-206ENST00000474564 CADPSQ9ULU8 1353 aa17.65■□□□□ 0.42
COL12A1-206ENST00000474564 CFTRP13569 1480 aa17.58■□□□□ 0.41
COL12A1-206ENST00000474564 LAMC3Q9Y6N6 1575 aa17.57■□□□□ 0.4
COL12A1-206ENST00000474564 PDS5BQ9NTI5 1447 aa17.52■□□□□ 0.4
COL12A1-206ENST00000474564 NESP48681 1621 aa17.45■□□□□ 0.38
COL12A1-206ENST00000474564 FANCD2Q9BXW9 1451 aa17.42■□□□□ 0.38
COL12A1-206ENST00000474564 PRDM2Q13029 1718 aa17.41■□□□□ 0.38
COL12A1-206ENST00000474564 TRIM41Q8WV44 630 aa17.39■□□□□ 0.37
COL12A1-206ENST00000474564 ERCC6Q03468 1493 aa17.38■□□□□ 0.37
COL12A1-206ENST00000474564 CEP164Q9UPV0 1460 aa17.38■□□□□ 0.37
COL12A1-206ENST00000474564 CHIC1Q5VXU3 224 aa17.35■□□□□ 0.37
COL12A1-206ENST00000474564 WRNQ14191 1432 aaPredicted RBP eCLIP17.33■□□□□ 0.36
COL12A1-206ENST00000474564 ABCC8Q09428 1581 aa17.32■□□□□ 0.36
COL12A1-206ENST00000474564 MRC2Q9UBG0 1479 aa17.24■□□□□ 0.35
COL12A1-206ENST00000474564 KIF21AQ7Z4S6 1674 aa17.23■□□□□ 0.35
COL12A1-206ENST00000474564 DNMBPQ6XZF7 1577 aa17.19■□□□□ 0.34
COL12A1-206ENST00000474564 TOP2BQ02880 1626 aa17.17■□□□□ 0.34
COL12A1-206ENST00000474564 CUX1P39880 1505 aa17.16■□□□□ 0.34
COL12A1-206ENST00000474564 TOPBP1Q92547 1522 aa17.16■□□□□ 0.34
COL12A1-206ENST00000474564 URB2Q14146 1524 aaKnown RBP17.14■□□□□ 0.33
COL12A1-206ENST00000474564 SYNJ1O43426 1573 aa17.13■□□□□ 0.33
COL12A1-206ENST00000474564 BIVM-ERCC5R4GMW8 1640 aa17.13■□□□□ 0.33
COL12A1-206ENST00000474564 WDR62O43379 1518 aa17.09■□□□□ 0.33
COL12A1-206ENST00000474564 FGD5Q6ZNL6 1462 aa17.08■□□□□ 0.32
COL12A1-206ENST00000474564 SOGA1O94964 1423 aa17.07■□□□□ 0.32
COL12A1-206ENST00000474564 THOC2Q8NI27 1593 aaKnown RBP17.05■□□□□ 0.32
COL12A1-206ENST00000474564 POLA1P09884 1462 aaPredicted RBP17.03■□□□□ 0.32
COL12A1-206ENST00000474564 EEA1Q15075 1411 aa17■□□□□ 0.31
COL12A1-206ENST00000474564 IFT140Q96RY7 1462 aa16.99■□□□□ 0.31
COL12A1-206ENST00000474564 KIF27Q86VH2 1401 aa16.98■□□□□ 0.31
COL12A1-206ENST00000474564 FAM9AQ8IZU1 332 aaPredicted RBP16.96■□□□□ 0.31
COL12A1-206ENST00000474564 CUX2O14529 1486 aa16.96■□□□□ 0.31
COL12A1-206ENST00000474564 RAD54L2Q9Y4B4 1467 aa16.95■□□□□ 0.3
COL12A1-206ENST00000474564 ABCA10Q8WWZ4 1543 aa16.94■□□□□ 0.3
COL12A1-206ENST00000474564 CSRNP3Q8WYN3 585 aa16.91■□□□□ 0.3
COL12A1-206ENST00000474564 TDRD9Q8NDG6 1382 aaKnown RBP16.89■□□□□ 0.29
COL12A1-206ENST00000474564 TARBP1Q13395 1621 aaKnown RBP16.87■□□□□ 0.29
COL12A1-206ENST00000474564 WDR97A6NE52 1622 aa16.86■□□□□ 0.29
COL12A1-206ENST00000474564 GAPVD1Q14C86 1478 aa16.86■□□□□ 0.29
COL12A1-206ENST00000474564 RUSC2Q8N2Y8 1516 aa16.8■□□□□ 0.28
COL12A1-206ENST00000474564 AQRO60306 1485 aaKnown RBP eCLIP16.8■□□□□ 0.28
COL12A1-206ENST00000474564 GRIN2BQ13224 1484 aa16.8■□□□□ 0.28
COL12A1-206ENST00000474564 IGF1RP08069 1367 aa16.78■□□□□ 0.28
COL12A1-206ENST00000474564 ERICH3Q5RHP9 1530 aa16.77■□□□□ 0.28
COL12A1-206ENST00000474564 ZNF608Q9ULD9 1512 aaPredicted RBP16.77■□□□□ 0.28
COL12A1-206ENST00000474564 ABCA5Q8WWZ7 1642 aa16.76■□□□□ 0.27
COL12A1-206ENST00000474564 CARMIL1Q5VZK9 1371 aa16.75■□□□□ 0.27
COL12A1-206ENST00000474564 EIF4G3O43432 1585 aaKnown RBP16.73■□□□□ 0.27
COL12A1-206ENST00000474564 UBTFP17480 764 aaKnown RBP16.72■□□□□ 0.27
COL12A1-206ENST00000474564 CUL7Q14999 1698 aa16.71■□□□□ 0.27
COL12A1-206ENST00000474564 CHMP7Q8WUX9 453 aaPredicted RBP16.7■□□□□ 0.26
COL12A1-206ENST00000474564 MAGI1Q96QZ7 1491 aaPredicted RBP16.69■□□□□ 0.26
COL12A1-206ENST00000474564 EHMT2Q96KQ7 1210 aa16.69■□□□□ 0.26
COL12A1-206ENST00000474564 FHAD1B1AJZ9 1412 aa16.69■□□□□ 0.26
COL12A1-206ENST00000474564 PBRM1Q86U86 1689 aa16.69■□□□□ 0.26
COL12A1-206ENST00000474564 RAPGEF2Q9Y4G8 1499 aa16.68■□□□□ 0.26
COL12A1-206ENST00000474564 FBLN2P98095 1184 aa16.68■□□□□ 0.26
COL12A1-206ENST00000474564 GOLGA3Q08378 1498 aa16.67■□□□□ 0.26
COL12A1-206ENST00000474564 PRXQ9BXM0 1461 aa16.67■□□□□ 0.26
COL12A1-206ENST00000474564 KIF21BO75037 1637 aa16.66■□□□□ 0.26
COL12A1-206ENST00000474564 SNAPC4Q5SXM2 1469 aa16.65■□□□□ 0.26
COL12A1-206ENST00000474564 LOC105371045A0A1W2PR82 267 aa16.64■□□□□ 0.25
COL12A1-206ENST00000474564 SYNJ2O15056 1496 aa16.61■□□□□ 0.25
COL12A1-206ENST00000474564 ADAMTS12P58397 1594 aa16.59■□□□□ 0.25
COL12A1-206ENST00000474564 TNIKQ9UKE5 1360 aa16.56■□□□□ 0.24
COL12A1-206ENST00000474564 GRIN2AQ12879 1464 aa16.54■□□□□ 0.24
COL12A1-206ENST00000474564 RANGAP1P46060 587 aaPredicted RBP16.47■□□□□ 0.23
COL12A1-206ENST00000474564 OSCARQ8IYS5 282 aa16.47■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms