RNA–Protein interactions for RNA: ENST00000474330.1

CDHR3-210, Transcript of cadherin related family member 3, humanhuman

TSL 5

Gene CDHR3, Length 1,603 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDHR3-210ENST00000474330 NISCHQ9Y2I1 1504 aa47.11■■■■■ 5.13
CDHR3-210ENST00000474330 CCDC180Q9P1Z9 1646 aa41.83■■■■■ 4.29
CDHR3-210ENST00000474330 ABCC9O60706 1549 aa41.14■■■■■ 4.18
CDHR3-210ENST00000474330 RB1CC1Q8TDY2 1594 aa39.45■■■■□ 3.91
CDHR3-210ENST00000474330 ZCCHC6Q5VYS8 1495 aaKnown RBP39.45■■■■□ 3.91
CDHR3-210ENST00000474330 NACADO15069 1562 aa39.37■■■■□ 3.89
CDHR3-210ENST00000474330 DCAF8L2P0C7V8 631 aa39.33■■■■□ 3.89
CDHR3-210ENST00000474330 MYO15BQ96JP2 1530 aa39.08■■■■□ 3.85
CDHR3-210ENST00000474330 DCAF1Q9Y4B6 1507 aa39.02■■■■□ 3.84
CDHR3-210ENST00000474330 UNC13AQ9UPW8 1703 aa38.7■■■■□ 3.79
CDHR3-210ENST00000474330 PABPN1Q86U42 306 aaKnown RBP eCLIP38.45■■■■□ 3.75
CDHR3-210ENST00000474330 BICRAQ9NZM4 1560 aa38.38■■■■□ 3.73
CDHR3-210ENST00000474330 SCRIBQ14160 1630 aa38.17■■■■□ 3.7
CDHR3-210ENST00000474330 DNAJC5BQ9UF47 199 aa38.08■■■■□ 3.69
CDHR3-210ENST00000474330 SHROOM4Q9ULL8 1493 aa37.93■■■■□ 3.66
CDHR3-210ENST00000474330 EIF4G1Q04637 1599 aaKnown RBP37.32■■■■□ 3.56
CDHR3-210ENST00000474330 CC2D2AQ9P2K1 1620 aa37.23■■■■□ 3.55
CDHR3-210ENST00000474330 CECR2Q9BXF3 1484 aa36.98■■■■□ 3.51
CDHR3-210ENST00000474330 SMARCA4P51532 1647 aa36.51■■■■□ 3.43
CDHR3-210ENST00000474330 BAZ1AQ9NRL2 1556 aaPredicted RBP36.48■■■■□ 3.43
CDHR3-210ENST00000474330 NCAPD3P42695 1498 aa36.37■■■■□ 3.41
CDHR3-210ENST00000474330 ATAD2BQ9ULI0 1458 aa36.36■■■■□ 3.41
CDHR3-210ENST00000474330 SUPT5HO00267 1087 aaKnown RBP36.34■■■■□ 3.41
CDHR3-210ENST00000474330 MROH2BQ7Z745 1585 aa36.33■■■■□ 3.41
CDHR3-210ENST00000474330 RSF1Q96T23 1441 aaPredicted RBP36.29■■■■□ 3.4
CDHR3-210ENST00000474330 SMARCA2P51531 1590 aa36.26■■■■□ 3.39
CDHR3-210ENST00000474330 PEG3Q9GZU2 1588 aa36.16■■■■□ 3.38
CDHR3-210ENST00000474330 HMGXB3Q12766 1538 aa36.13■■■■□ 3.37
CDHR3-210ENST00000474330 WIZO95785 1651 aa36.04■■■■□ 3.36
CDHR3-210ENST00000474330 BAZ1BQ9UIG0 1483 aaKnown RBP36■■■■□ 3.35
CDHR3-210ENST00000474330 TOP2AP11388 1531 aaKnown RBP35.67■■■■□ 3.3
CDHR3-210ENST00000474330 NESP48681 1621 aa35.6■■■■□ 3.29
CDHR3-210ENST00000474330 ERCC6Q03468 1493 aa35.41■■■■□ 3.26
CDHR3-210ENST00000474330 LAMC3Q9Y6N6 1575 aa35.4■■■■□ 3.26
CDHR3-210ENST00000474330 CADPSQ9ULU8 1353 aa35.29■■■■□ 3.24
CDHR3-210ENST00000474330 CCDC88BA6NC98 1476 aa35.22■■■■□ 3.23
CDHR3-210ENST00000474330 KIF21AQ7Z4S6 1674 aa35.17■■■■□ 3.22
CDHR3-210ENST00000474330 PDS5BQ9NTI5 1447 aa35.15■■■■□ 3.22
CDHR3-210ENST00000474330 CUX2O14529 1486 aa35.13■■■■□ 3.21
CDHR3-210ENST00000474330 THOC2Q8NI27 1593 aaKnown RBP35.06■■■■□ 3.2
CDHR3-210ENST00000474330 CFTRP13569 1480 aa35.04■■■■□ 3.2
CDHR3-210ENST00000474330 FANCD2Q9BXW9 1451 aa34.87■■■■□ 3.17
CDHR3-210ENST00000474330 MRC2Q9UBG0 1479 aa34.81■■■■□ 3.16
CDHR3-210ENST00000474330 CEP164Q9UPV0 1460 aa34.81■■■■□ 3.16
CDHR3-210ENST00000474330 PRDM2Q13029 1718 aa34.77■■■■□ 3.16
CDHR3-210ENST00000474330 WDR62O43379 1518 aa34.73■■■■□ 3.15
CDHR3-210ENST00000474330 CHIC1Q5VXU3 224 aa34.65■■■■□ 3.14
CDHR3-210ENST00000474330 URB2Q14146 1524 aaKnown RBP34.58■■■■□ 3.13
CDHR3-210ENST00000474330 DNAJC5Q9H3Z4 198 aa34.37■■■■□ 3.09
CDHR3-210ENST00000474330 TOPBP1Q92547 1522 aa34.31■■■■□ 3.08
CDHR3-210ENST00000474330 ABCC8Q09428 1581 aa34.31■■■■□ 3.08
CDHR3-210ENST00000474330 TRIM41Q8WV44 630 aa34.25■■■■□ 3.07
CDHR3-210ENST00000474330 DNMBPQ6XZF7 1577 aa34.23■■■■□ 3.07
CDHR3-210ENST00000474330 WRNQ14191 1432 aaPredicted RBP eCLIP34.17■■■■□ 3.06
CDHR3-210ENST00000474330 IFT140Q96RY7 1462 aa34.09■■■■□ 3.05
CDHR3-210ENST00000474330 SYNJ1O43426 1573 aa34.04■■■■□ 3.04
CDHR3-210ENST00000474330 ZNF608Q9ULD9 1512 aaPredicted RBP34.04■■■■□ 3.04
CDHR3-210ENST00000474330 CUX1P39880 1505 aa34.03■■■■□ 3.04
CDHR3-210ENST00000474330 BIVM-ERCC5R4GMW8 1640 aa34.01■■■■□ 3.04
CDHR3-210ENST00000474330 TOP2BQ02880 1626 aa34.01■■■■□ 3.03
CDHR3-210ENST00000474330 POLA1P09884 1462 aaPredicted RBP34.01■■■■□ 3.03
CDHR3-210ENST00000474330 TARBP1Q13395 1621 aaKnown RBP33.98■■■■□ 3.03
CDHR3-210ENST00000474330 RAD54L2Q9Y4B4 1467 aa33.89■■■■□ 3.02
CDHR3-210ENST00000474330 FGD5Q6ZNL6 1462 aa33.88■■■■□ 3.01
CDHR3-210ENST00000474330 SOGA1O94964 1423 aa33.86■■■■□ 3.01
CDHR3-210ENST00000474330 EIF4G3O43432 1585 aaKnown RBP33.85■■■■□ 3.01
CDHR3-210ENST00000474330 AQRO60306 1485 aaKnown RBP eCLIP33.82■■■■□ 3
CDHR3-210ENST00000474330 TDRD9Q8NDG6 1382 aaKnown RBP33.71■■■□□ 2.99
CDHR3-210ENST00000474330 OSCARQ8IYS5 282 aa33.68■■■□□ 2.98
CDHR3-210ENST00000474330 WDR97A6NE52 1622 aa33.64■■■□□ 2.98
CDHR3-210ENST00000474330 ABCA10Q8WWZ4 1543 aa33.55■■■□□ 2.96
CDHR3-210ENST00000474330 EEA1Q15075 1411 aa33.54■■■□□ 2.96
CDHR3-210ENST00000474330 FAM9AQ8IZU1 332 aaPredicted RBP33.53■■■□□ 2.96
CDHR3-210ENST00000474330 CHD1O14646 1710 aa33.5■■■□□ 2.95
CDHR3-210ENST00000474330 RUSC2Q8N2Y8 1516 aa33.48■■■□□ 2.95
CDHR3-210ENST00000474330 GRIN2BQ13224 1484 aa33.45■■■□□ 2.95
CDHR3-210ENST00000474330 GAPVD1Q14C86 1478 aa33.45■■■□□ 2.95
CDHR3-210ENST00000474330 SNAPC4Q5SXM2 1469 aa33.45■■■□□ 2.95
CDHR3-210ENST00000474330 ABCA5Q8WWZ7 1642 aa33.45■■■□□ 2.94
CDHR3-210ENST00000474330 PBRM1Q86U86 1689 aa33.42■■■□□ 2.94
CDHR3-210ENST00000474330 FBLN2P98095 1184 aa33.39■■■□□ 2.94
CDHR3-210ENST00000474330 MAGI1Q96QZ7 1491 aaPredicted RBP33.38■■■□□ 2.93
CDHR3-210ENST00000474330 KIF27Q86VH2 1401 aa33.35■■■□□ 2.93
CDHR3-210ENST00000474330 CSRNP3Q8WYN3 585 aa33.34■■■□□ 2.93
CDHR3-210ENST00000474330 CHMP7Q8WUX9 453 aaPredicted RBP33.27■■■□□ 2.92
CDHR3-210ENST00000474330 SYNJ2O15056 1496 aa33.27■■■□□ 2.92
CDHR3-210ENST00000474330 LOC105371045A0A1W2PR82 267 aa33.25■■■□□ 2.91
CDHR3-210ENST00000474330 RIMBP3CA6NJZ7 1639 aa33.19■■■□□ 2.9
CDHR3-210ENST00000474330 RIMBP3BA6NNM3 1639 aa33.19■■■□□ 2.9
CDHR3-210ENST00000474330 RIMBP3Q9UFD9 1639 aa33.19■■■□□ 2.9
CDHR3-210ENST00000474330 ARHGEF11O15085 1522 aa33.13■■■□□ 2.89
CDHR3-210ENST00000474330 ERICH3Q5RHP9 1530 aa33.13■■■□□ 2.89
CDHR3-210ENST00000474330 CLASP1Q7Z460 1538 aa33.11■■■□□ 2.89
CDHR3-210ENST00000474330 ADAMTS12P58397 1594 aa33.11■■■□□ 2.89
CDHR3-210ENST00000474330 KIF21BO75037 1637 aa33.1■■■□□ 2.89
CDHR3-210ENST00000474330 IGF1RP08069 1367 aa33.08■■■□□ 2.89
CDHR3-210ENST00000474330 FHAD1B1AJZ9 1412 aa33.04■■■□□ 2.88
CDHR3-210ENST00000474330 CUL7Q14999 1698 aa33.04■■■□□ 2.88
CDHR3-210ENST00000474330 GRIN2AQ12879 1464 aa33.04■■■□□ 2.88
CDHR3-210ENST00000474330 PRXQ9BXM0 1461 aa33.04■■■□□ 2.88
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms