RNA–Protein interactions for RNA: ENST00000474190.1

CASC3-204, Transcript of CASC3, exon junction complex subunit, humanhuman

TSL 3

Gene CASC3, Length 908 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CASC3-204ENST00000474190 NISCHQ9Y2I1 1504 aa24.91■■□□□ 1.58
CASC3-204ENST00000474190 CCDC180Q9P1Z9 1646 aa21.87■■□□□ 1.09
CASC3-204ENST00000474190 ABCC9O60706 1549 aa21.37■■□□□ 1.01
CASC3-204ENST00000474190 ZCCHC6Q5VYS8 1495 aaKnown RBP20.84■□□□□ 0.93
CASC3-204ENST00000474190 DCAF1Q9Y4B6 1507 aa20.63■□□□□ 0.89
CASC3-204ENST00000474190 MYO15BQ96JP2 1530 aa20.61■□□□□ 0.89
CASC3-204ENST00000474190 DCAF8L2P0C7V8 631 aa20.57■□□□□ 0.88
CASC3-204ENST00000474190 NACADO15069 1562 aa20.55■□□□□ 0.88
CASC3-204ENST00000474190 DNAJC5BQ9UF47 199 aa20.48■□□□□ 0.87
CASC3-204ENST00000474190 RB1CC1Q8TDY2 1594 aa20.45■□□□□ 0.86
CASC3-204ENST00000474190 SCRIBQ14160 1630 aa20.03■□□□□ 0.8
CASC3-204ENST00000474190 BICRAQ9NZM4 1560 aa20■□□□□ 0.79
CASC3-204ENST00000474190 UNC13AQ9UPW8 1703 aa19.97■□□□□ 0.79
CASC3-204ENST00000474190 PABPN1Q86U42 306 aaKnown RBP eCLIP19.94■□□□□ 0.78
CASC3-204ENST00000474190 SHROOM4Q9ULL8 1493 aa19.84■□□□□ 0.77
CASC3-204ENST00000474190 CECR2Q9BXF3 1484 aa19.46■□□□□ 0.71
CASC3-204ENST00000474190 EIF4G1Q04637 1599 aaKnown RBP19.36■□□□□ 0.69
CASC3-204ENST00000474190 CC2D2AQ9P2K1 1620 aa19.3■□□□□ 0.68
CASC3-204ENST00000474190 MROH2BQ7Z745 1585 aa19.25■□□□□ 0.67
CASC3-204ENST00000474190 SMARCA4P51532 1647 aa19.22■□□□□ 0.67
CASC3-204ENST00000474190 BAZ1AQ9NRL2 1556 aaPredicted RBP19.21■□□□□ 0.67
CASC3-204ENST00000474190 RSF1Q96T23 1441 aaPredicted RBP19.16■□□□□ 0.66
CASC3-204ENST00000474190 DNAJC5Q9H3Z4 198 aa19.15■□□□□ 0.66
CASC3-204ENST00000474190 ATAD2BQ9ULI0 1458 aa19.11■□□□□ 0.65
CASC3-204ENST00000474190 PEG3Q9GZU2 1588 aa19.08■□□□□ 0.65
CASC3-204ENST00000474190 NCAPD3P42695 1498 aa19.06■□□□□ 0.64
CASC3-204ENST00000474190 SMARCA2P51531 1590 aa18.98■□□□□ 0.63
CASC3-204ENST00000474190 WIZO95785 1651 aa18.97■□□□□ 0.63
CASC3-204ENST00000474190 HMGXB3Q12766 1538 aa18.92■□□□□ 0.62
CASC3-204ENST00000474190 BAZ1BQ9UIG0 1483 aaKnown RBP18.87■□□□□ 0.61
CASC3-204ENST00000474190 TOP2AP11388 1531 aaKnown RBP18.79■□□□□ 0.6
CASC3-204ENST00000474190 SUPT5HO00267 1087 aaKnown RBP18.78■□□□□ 0.6
CASC3-204ENST00000474190 CCDC88BA6NC98 1476 aa18.64■□□□□ 0.57
CASC3-204ENST00000474190 CUX2O14529 1486 aa18.62■□□□□ 0.57
CASC3-204ENST00000474190 NESP48681 1621 aa18.52■□□□□ 0.55
CASC3-204ENST00000474190 CADPSQ9ULU8 1353 aa18.5■□□□□ 0.55
CASC3-204ENST00000474190 CFTRP13569 1480 aa18.47■□□□□ 0.55
CASC3-204ENST00000474190 ERCC6Q03468 1493 aa18.46■□□□□ 0.55
CASC3-204ENST00000474190 LAMC3Q9Y6N6 1575 aa18.38■□□□□ 0.53
CASC3-204ENST00000474190 PDS5BQ9NTI5 1447 aa18.27■□□□□ 0.52
CASC3-204ENST00000474190 FANCD2Q9BXW9 1451 aa18.25■□□□□ 0.51
CASC3-204ENST00000474190 THOC2Q8NI27 1593 aaKnown RBP18.21■□□□□ 0.51
CASC3-204ENST00000474190 KIF21AQ7Z4S6 1674 aa18.15■□□□□ 0.5
CASC3-204ENST00000474190 CEP164Q9UPV0 1460 aa18.14■□□□□ 0.5
CASC3-204ENST00000474190 TRIM41Q8WV44 630 aa18.11■□□□□ 0.49
CASC3-204ENST00000474190 URB2Q14146 1524 aaKnown RBP18.11■□□□□ 0.49
CASC3-204ENST00000474190 PRDM2Q13029 1718 aa18.09■□□□□ 0.49
CASC3-204ENST00000474190 MRC2Q9UBG0 1479 aa18.09■□□□□ 0.49
CASC3-204ENST00000474190 WDR62O43379 1518 aa18.05■□□□□ 0.48
CASC3-204ENST00000474190 CUX1P39880 1505 aa18.02■□□□□ 0.47
CASC3-204ENST00000474190 TOPBP1Q92547 1522 aa18.01■□□□□ 0.47
CASC3-204ENST00000474190 ABCC8Q09428 1581 aa18■□□□□ 0.47
CASC3-204ENST00000474190 WRNQ14191 1432 aaPredicted RBP eCLIP17.97■□□□□ 0.47
CASC3-204ENST00000474190 DNMBPQ6XZF7 1577 aa17.96■□□□□ 0.46
CASC3-204ENST00000474190 SYNJ1O43426 1573 aa17.93■□□□□ 0.46
CASC3-204ENST00000474190 POLA1P09884 1462 aaPredicted RBP17.89■□□□□ 0.45
CASC3-204ENST00000474190 TOP2BQ02880 1626 aa17.87■□□□□ 0.45
CASC3-204ENST00000474190 FGD5Q6ZNL6 1462 aa17.87■□□□□ 0.45
CASC3-204ENST00000474190 BIVM-ERCC5R4GMW8 1640 aa17.84■□□□□ 0.45
CASC3-204ENST00000474190 RAD54L2Q9Y4B4 1467 aa17.83■□□□□ 0.45
CASC3-204ENST00000474190 CHIC1Q5VXU3 224 aa17.81■□□□□ 0.44
CASC3-204ENST00000474190 IFT140Q96RY7 1462 aa17.79■□□□□ 0.44
CASC3-204ENST00000474190 SOGA1O94964 1423 aa17.79■□□□□ 0.44
CASC3-204ENST00000474190 TARBP1Q13395 1621 aaKnown RBP17.79■□□□□ 0.44
CASC3-204ENST00000474190 ZNF608Q9ULD9 1512 aaPredicted RBP17.77■□□□□ 0.43
CASC3-204ENST00000474190 ABCA10Q8WWZ4 1543 aa17.73■□□□□ 0.43
CASC3-204ENST00000474190 TDRD9Q8NDG6 1382 aaKnown RBP17.69■□□□□ 0.42
CASC3-204ENST00000474190 AQRO60306 1485 aaKnown RBP eCLIP17.69■□□□□ 0.428e-8■□□□□ 10.8
CASC3-204ENST00000474190 WDR97A6NE52 1622 aa17.66■□□□□ 0.42
CASC3-204ENST00000474190 RUSC2Q8N2Y8 1516 aa17.61■□□□□ 0.41
CASC3-204ENST00000474190 ABCA5Q8WWZ7 1642 aa17.6■□□□□ 0.41
CASC3-204ENST00000474190 EIF4G3O43432 1585 aaKnown RBP17.59■□□□□ 0.41
CASC3-204ENST00000474190 RIMBP3CA6NJZ7 1639 aa17.58■□□□□ 0.4
CASC3-204ENST00000474190 RIMBP3BA6NNM3 1639 aa17.58■□□□□ 0.4
CASC3-204ENST00000474190 RIMBP3Q9UFD9 1639 aa17.58■□□□□ 0.4
CASC3-204ENST00000474190 GAPVD1Q14C86 1478 aa17.57■□□□□ 0.4
CASC3-204ENST00000474190 OSCARQ8IYS5 282 aa17.56■□□□□ 0.4
CASC3-204ENST00000474190 IGF1RP08069 1367 aa17.55■□□□□ 0.4
CASC3-204ENST00000474190 GRIN2BQ13224 1484 aa17.53■□□□□ 0.4
CASC3-204ENST00000474190 KIF27Q86VH2 1401 aa17.53■□□□□ 0.4
CASC3-204ENST00000474190 SNAPC4Q5SXM2 1469 aa17.49■□□□□ 0.39
CASC3-204ENST00000474190 ERICH3Q5RHP9 1530 aa17.47■□□□□ 0.39
CASC3-204ENST00000474190 MAGI1Q96QZ7 1491 aaPredicted RBP17.44■□□□□ 0.38
CASC3-204ENST00000474190 ARHGEF11O15085 1522 aa17.44■□□□□ 0.38
CASC3-204ENST00000474190 PBRM1Q86U86 1689 aa17.4■□□□□ 0.38
CASC3-204ENST00000474190 ADAMTS12P58397 1594 aa17.4■□□□□ 0.38
CASC3-204ENST00000474190 FHAD1B1AJZ9 1412 aa17.39■□□□□ 0.38
CASC3-204ENST00000474190 SYNJ2O15056 1496 aa17.38■□□□□ 0.37
CASC3-204ENST00000474190 PRXQ9BXM0 1461 aa17.38■□□□□ 0.37
CASC3-204ENST00000474190 EEA1Q15075 1411 aa17.38■□□□□ 0.37
CASC3-204ENST00000474190 CSRNP3Q8WYN3 585 aa17.37■□□□□ 0.37
CASC3-204ENST00000474190 CARMIL1Q5VZK9 1371 aa17.37■□□□□ 0.37
CASC3-204ENST00000474190 FAM9AQ8IZU1 332 aaPredicted RBP17.35■□□□□ 0.37
CASC3-204ENST00000474190 GRIN2AQ12879 1464 aa17.32■□□□□ 0.36
CASC3-204ENST00000474190 CHMP7Q8WUX9 453 aaPredicted RBP17.31■□□□□ 0.36
CASC3-204ENST00000474190 NUP160Q12769 1436 aa17.3■□□□□ 0.36
CASC3-204ENST00000474190 FBLN2P98095 1184 aa17.28■□□□□ 0.36
CASC3-204ENST00000474190 CUL7Q14999 1698 aa17.28■□□□□ 0.36
CASC3-204ENST00000474190 RAPGEF2Q9Y4G8 1499 aa17.27■□□□□ 0.36
CASC3-204ENST00000474190 ARAP1Q96P48 1450 aa17.24■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms