RNA–Protein interactions for RNA: ENST00000473924.1

DDX56-209, Transcript of DEAD-box helicase 56, humanhuman

TSL 5

Gene DDX56, Length 385 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX56-209ENST00000473924 NISCHQ9Y2I1 1504 aa29.73■■■□□ 2.35
DDX56-209ENST00000473924 CCDC180Q9P1Z9 1646 aa26.36■■□□□ 1.81
DDX56-209ENST00000473924 ABCC9O60706 1549 aa25.68■■□□□ 1.7
DDX56-209ENST00000473924 DCAF8L2P0C7V8 631 aa24.89■■□□□ 1.58
DDX56-209ENST00000473924 ZCCHC6Q5VYS8 1495 aaKnown RBP24.79■■□□□ 1.56
DDX56-209ENST00000473924 RB1CC1Q8TDY2 1594 aa24.76■■□□□ 1.55
DDX56-209ENST00000473924 NACADO15069 1562 aa24.76■■□□□ 1.55
DDX56-209ENST00000473924 MYO15BQ96JP2 1530 aa24.62■■□□□ 1.53
DDX56-209ENST00000473924 DCAF1Q9Y4B6 1507 aa24.58■■□□□ 1.53
DDX56-209ENST00000473924 UNC13AQ9UPW8 1703 aa24.17■■□□□ 1.46
DDX56-209ENST00000473924 SCRIBQ14160 1630 aa24.1■■□□□ 1.45
DDX56-209ENST00000473924 PABPN1Q86U42 306 aaKnown RBP eCLIP24.04■■□□□ 1.441e-10■■■■□ 24.1
DDX56-209ENST00000473924 BICRAQ9NZM4 1560 aa23.95■■□□□ 1.43
DDX56-209ENST00000473924 SHROOM4Q9ULL8 1493 aa23.74■■□□□ 1.39
DDX56-209ENST00000473924 DNAJC5BQ9UF47 199 aa23.38■■□□□ 1.33
DDX56-209ENST00000473924 EIF4G1Q04637 1599 aaKnown RBP23.35■■□□□ 1.33
DDX56-209ENST00000473924 CC2D2AQ9P2K1 1620 aa23.22■■□□□ 1.31
DDX56-209ENST00000473924 CECR2Q9BXF3 1484 aa23.14■■□□□ 1.29
DDX56-209ENST00000473924 BAZ1AQ9NRL2 1556 aaPredicted RBP23.06■■□□□ 1.28
DDX56-209ENST00000473924 SMARCA4P51532 1647 aa23.04■■□□□ 1.28
DDX56-209ENST00000473924 MROH2BQ7Z745 1585 aa22.92■■□□□ 1.26
DDX56-209ENST00000473924 ATAD2BQ9ULI0 1458 aa22.87■■□□□ 1.25
DDX56-209ENST00000473924 SMARCA2P51531 1590 aa22.87■■□□□ 1.25
DDX56-209ENST00000473924 NCAPD3P42695 1498 aa22.83■■□□□ 1.25
DDX56-209ENST00000473924 PEG3Q9GZU2 1588 aa22.79■■□□□ 1.24
DDX56-209ENST00000473924 HMGXB3Q12766 1538 aa22.73■■□□□ 1.23
DDX56-209ENST00000473924 BAZ1BQ9UIG0 1483 aaKnown RBP22.73■■□□□ 1.23
DDX56-209ENST00000473924 RSF1Q96T23 1441 aaPredicted RBP22.72■■□□□ 1.23
DDX56-209ENST00000473924 WIZO95785 1651 aa22.69■■□□□ 1.22
DDX56-209ENST00000473924 TOP2AP11388 1531 aaKnown RBP22.46■■□□□ 1.19
DDX56-209ENST00000473924 SUPT5HO00267 1087 aaKnown RBP22.34■■□□□ 1.17
DDX56-209ENST00000473924 NESP48681 1621 aa22.25■■□□□ 1.15
DDX56-209ENST00000473924 LAMC3Q9Y6N6 1575 aa22.22■■□□□ 1.15
DDX56-209ENST00000473924 CCDC88BA6NC98 1476 aa22.2■■□□□ 1.14
DDX56-209ENST00000473924 CADPSQ9ULU8 1353 aa22.19■■□□□ 1.14
DDX56-209ENST00000473924 ERCC6Q03468 1493 aa22.15■■□□□ 1.14
DDX56-209ENST00000473924 PDS5BQ9NTI5 1447 aa22.08■■□□□ 1.13
DDX56-209ENST00000473924 CFTRP13569 1480 aa22.08■■□□□ 1.12
DDX56-209ENST00000473924 KIF21AQ7Z4S6 1674 aa22■■□□□ 1.11
DDX56-209ENST00000473924 FANCD2Q9BXW9 1451 aa21.95■■□□□ 1.1
DDX56-209ENST00000473924 PRDM2Q13029 1718 aa21.93■■□□□ 1.1
DDX56-209ENST00000473924 CEP164Q9UPV0 1460 aa21.91■■□□□ 1.1
DDX56-209ENST00000473924 THOC2Q8NI27 1593 aaKnown RBP21.86■■□□□ 1.09
DDX56-209ENST00000473924 MRC2Q9UBG0 1479 aa21.83■■□□□ 1.09
DDX56-209ENST00000473924 CUX2O14529 1486 aa21.81■■□□□ 1.08
DDX56-209ENST00000473924 WDR62O43379 1518 aa21.74■■□□□ 1.07
DDX56-209ENST00000473924 URB2Q14146 1524 aaKnown RBP21.7■■□□□ 1.06
DDX56-209ENST00000473924 ABCC8Q09428 1581 aa21.62■■□□□ 1.05
DDX56-209ENST00000473924 TOPBP1Q92547 1522 aa21.6■■□□□ 1.05
DDX56-209ENST00000473924 DNMBPQ6XZF7 1577 aa21.6■■□□□ 1.05
DDX56-209ENST00000473924 CUX1P39880 1505 aa21.49■■□□□ 1.03
DDX56-209ENST00000473924 WRNQ14191 1432 aaPredicted RBP eCLIP21.44■■□□□ 1.02
DDX56-209ENST00000473924 IFT140Q96RY7 1462 aa21.44■■□□□ 1.02
DDX56-209ENST00000473924 POLA1P09884 1462 aaPredicted RBP21.43■■□□□ 1.02
DDX56-209ENST00000473924 FGD5Q6ZNL6 1462 aa21.41■■□□□ 1.02
DDX56-209ENST00000473924 SOGA1O94964 1423 aa21.37■■□□□ 1.01
DDX56-209ENST00000473924 TOP2BQ02880 1626 aa21.36■■□□□ 1.01
DDX56-209ENST00000473924 SYNJ1O43426 1573 aa21.36■■□□□ 1.01
DDX56-209ENST00000473924 BIVM-ERCC5R4GMW8 1640 aa21.35■■□□□ 1.01
DDX56-209ENST00000473924 RAD54L2Q9Y4B4 1467 aa21.34■■□□□ 1.01
DDX56-209ENST00000473924 TARBP1Q13395 1621 aaKnown RBP21.34■■□□□ 1.01
DDX56-209ENST00000473924 ZNF608Q9ULD9 1512 aaPredicted RBP21.32■■□□□ 1
DDX56-209ENST00000473924 DNAJC5Q9H3Z4 198 aa21.29■■□□□ 1
DDX56-209ENST00000473924 EIF4G3O43432 1585 aaKnown RBP21.25■□□□□ 0.99
DDX56-209ENST00000473924 TDRD9Q8NDG6 1382 aaKnown RBP21.23■□□□□ 0.99
DDX56-209ENST00000473924 AQRO60306 1485 aaKnown RBP eCLIP21.23■□□□□ 0.993e-6■■■■■ 39.9
DDX56-209ENST00000473924 WDR97A6NE52 1622 aa21.2■□□□□ 0.98
DDX56-209ENST00000473924 ABCA10Q8WWZ4 1543 aa21.19■□□□□ 0.98
DDX56-209ENST00000473924 GAPVD1Q14C86 1478 aa21.12■□□□□ 0.97
DDX56-209ENST00000473924 GRIN2BQ13224 1484 aa21.09■□□□□ 0.97
DDX56-209ENST00000473924 ABCA5Q8WWZ7 1642 aa21.09■□□□□ 0.97
DDX56-209ENST00000473924 TRIM41Q8WV44 630 aa21.09■□□□□ 0.97
DDX56-209ENST00000473924 PBRM1Q86U86 1689 aa21.06■□□□□ 0.96
DDX56-209ENST00000473924 SNAPC4Q5SXM2 1469 aa21.04■□□□□ 0.96
DDX56-209ENST00000473924 FBLN2P98095 1184 aa21.02■□□□□ 0.96
DDX56-209ENST00000473924 MAGI1Q96QZ7 1491 aaPredicted RBP21.01■□□□□ 0.95
DDX56-209ENST00000473924 KIF27Q86VH2 1401 aa20.99■□□□□ 0.95
DDX56-209ENST00000473924 OSCARQ8IYS5 282 aa20.98■□□□□ 0.95
DDX56-209ENST00000473924 CHMP7Q8WUX9 453 aaPredicted RBP20.96■□□□□ 0.95
DDX56-209ENST00000473924 CHD1O14646 1710 aa20.95■□□□□ 0.94
DDX56-209ENST00000473924 ERICH3Q5RHP9 1530 aa20.95■□□□□ 0.94
DDX56-209ENST00000473924 SYNJ2O15056 1496 aa20.94■□□□□ 0.94
DDX56-209ENST00000473924 CHIC1Q5VXU3 224 aa20.9■□□□□ 0.94
DDX56-209ENST00000473924 ADAMTS12P58397 1594 aa20.89■□□□□ 0.93
DDX56-209ENST00000473924 FHAD1B1AJZ9 1412 aa20.87■□□□□ 0.93
DDX56-209ENST00000473924 IGF1RP08069 1367 aa20.85■□□□□ 0.93
DDX56-209ENST00000473924 RUSC2Q8N2Y8 1516 aa20.82■□□□□ 0.92
DDX56-209ENST00000473924 GRIN2AQ12879 1464 aa20.81■□□□□ 0.92
DDX56-209ENST00000473924 CUL7Q14999 1698 aa20.8■□□□□ 0.92
DDX56-209ENST00000473924 CARMIL1Q5VZK9 1371 aa20.76■□□□□ 0.91
DDX56-209ENST00000473924 CLASP1Q7Z460 1538 aa20.7■□□□□ 0.9
DDX56-209ENST00000473924 NUP160Q12769 1436 aa20.7■□□□□ 0.9
DDX56-209ENST00000473924 CEP170Q5SW79 1584 aa20.69■□□□□ 0.9
DDX56-209ENST00000473924 EEA1Q15075 1411 aa20.69■□□□□ 0.9
DDX56-209ENST00000473924 FAM9AQ8IZU1 332 aaPredicted RBP20.67■□□□□ 0.9
DDX56-209ENST00000473924 RAPGEF2Q9Y4G8 1499 aa20.65■□□□□ 0.9
DDX56-209ENST00000473924 CSRNP3Q8WYN3 585 aa20.65■□□□□ 0.9
DDX56-209ENST00000473924 ARHGEF11O15085 1522 aa20.6■□□□□ 0.89
DDX56-209ENST00000473924 RIMBP3CA6NJZ7 1639 aa20.59■□□□□ 0.89
DDX56-209ENST00000473924 RIMBP3BA6NNM3 1639 aa20.59■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms