RNA–Protein interactions for RNA: ENST00000473782.1

HPS4-210, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 2

Gene HPS4, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-210ENST00000473782 NISCHQ9Y2I1 1504 aa41.96■■■■■ 4.31
HPS4-210ENST00000473782 ABCC9O60706 1549 aa38.72■■■■□ 3.79
HPS4-210ENST00000473782 CCDC180Q9P1Z9 1646 aa37.86■■■■□ 3.65
HPS4-210ENST00000473782 DNAJC5BQ9UF47 199 aa37.2■■■■□ 3.55
HPS4-210ENST00000473782 RB1CC1Q8TDY2 1594 aa36.42■■■■□ 3.42
HPS4-210ENST00000473782 NACADO15069 1562 aa36.02■■■■□ 3.36
HPS4-210ENST00000473782 PABPN1Q86U42 306 aaKnown RBP eCLIP35.98■■■■□ 3.35
HPS4-210ENST00000473782 DCAF8L2P0C7V8 631 aa35.67■■■■□ 3.3
HPS4-210ENST00000473782 UNC13AQ9UPW8 1703 aa35.63■■■■□ 3.29
HPS4-210ENST00000473782 BICRAQ9NZM4 1560 aa35.55■■■■□ 3.28
HPS4-210ENST00000473782 MYO15BQ96JP2 1530 aa35.33■■■■□ 3.25
HPS4-210ENST00000473782 CECR2Q9BXF3 1484 aa34.95■■■■□ 3.19
HPS4-210ENST00000473782 CC2D2AQ9P2K1 1620 aa34.92■■■■□ 3.18
HPS4-210ENST00000473782 SHROOM4Q9ULL8 1493 aa34.84■■■■□ 3.17
HPS4-210ENST00000473782 EIF4G1Q04637 1599 aaKnown RBP34.66■■■■□ 3.14
HPS4-210ENST00000473782 ZCCHC6Q5VYS8 1495 aaKnown RBP34.61■■■■□ 3.13
HPS4-210ENST00000473782 DNAJC5Q9H3Z4 198 aa34.61■■■■□ 3.13
HPS4-210ENST00000473782 DCAF1Q9Y4B6 1507 aa34.59■■■■□ 3.13
HPS4-210ENST00000473782 SCRIBQ14160 1630 aa34.5■■■■□ 3.11
HPS4-210ENST00000473782 CUX2O14529 1486 aa33.64■■■□□ 2.98
HPS4-210ENST00000473782 ERCC6Q03468 1493 aa33.38■■■□□ 2.93
HPS4-210ENST00000473782 NCAPD3P42695 1498 aa33.36■■■□□ 2.93
HPS4-210ENST00000473782 ATAD2BQ9ULI0 1458 aa33.14■■■□□ 2.9
HPS4-210ENST00000473782 NESP48681 1621 aa33.1■■■□□ 2.89
HPS4-210ENST00000473782 HMGXB3Q12766 1538 aa32.96■■■□□ 2.87
HPS4-210ENST00000473782 SMARCA2P51531 1590 aa32.9■■■□□ 2.86
HPS4-210ENST00000473782 THOC2Q8NI27 1593 aaKnown RBP32.86■■■□□ 2.85
HPS4-210ENST00000473782 SMARCA4P51532 1647 aa32.85■■■□□ 2.85
HPS4-210ENST00000473782 BAZ1BQ9UIG0 1483 aaKnown RBP32.68■■■□□ 2.82
HPS4-210ENST00000473782 TRIM41Q8WV44 630 aa32.66■■■□□ 2.82
HPS4-210ENST00000473782 LAMC3Q9Y6N6 1575 aa32.62■■■□□ 2.81
HPS4-210ENST00000473782 PEG3Q9GZU2 1588 aa32.58■■■□□ 2.81
HPS4-210ENST00000473782 BAZ1AQ9NRL2 1556 aaPredicted RBP32.53■■■□□ 2.8
HPS4-210ENST00000473782 KIF21AQ7Z4S6 1674 aa32.53■■■□□ 2.8
HPS4-210ENST00000473782 PDS5BQ9NTI5 1447 aa32.47■■■□□ 2.79
HPS4-210ENST00000473782 MROH2BQ7Z745 1585 aa32.36■■■□□ 2.77
HPS4-210ENST00000473782 CADPSQ9ULU8 1353 aa32.29■■■□□ 2.76
HPS4-210ENST00000473782 MRC2Q9UBG0 1479 aa32.26■■■□□ 2.75
HPS4-210ENST00000473782 WDR62O43379 1518 aa32.23■■■□□ 2.75
HPS4-210ENST00000473782 OSCARQ8IYS5 282 aa32■■■□□ 2.71
HPS4-210ENST00000473782 CEP164Q9UPV0 1460 aa31.94■■■□□ 2.7
HPS4-210ENST00000473782 FANCD2Q9BXW9 1451 aa31.89■■■□□ 2.7
HPS4-210ENST00000473782 WIZO95785 1651 aa31.87■■■□□ 2.69
HPS4-210ENST00000473782 CFTRP13569 1480 aa31.77■■■□□ 2.68
HPS4-210ENST00000473782 URB2Q14146 1524 aaKnown RBP31.73■■■□□ 2.67
HPS4-210ENST00000473782 RIMBP3CA6NJZ7 1639 aa31.66■■■□□ 2.66
HPS4-210ENST00000473782 RIMBP3BA6NNM3 1639 aa31.66■■■□□ 2.66
HPS4-210ENST00000473782 RIMBP3Q9UFD9 1639 aa31.66■■■□□ 2.66
HPS4-210ENST00000473782 ARHGEF11O15085 1522 aa31.49■■■□□ 2.63
HPS4-210ENST00000473782 ZNF608Q9ULD9 1512 aaPredicted RBP31.49■■■□□ 2.63
HPS4-210ENST00000473782 RSF1Q96T23 1441 aaPredicted RBP31.41■■■□□ 2.62
HPS4-210ENST00000473782 TOP2AP11388 1531 aaKnown RBP31.39■■■□□ 2.61
HPS4-210ENST00000473782 IFT140Q96RY7 1462 aa31.36■■■□□ 2.61
HPS4-210ENST00000473782 CYB5RLQ6IPT4 315 aa31.33■■■□□ 2.61
HPS4-210ENST00000473782 TOPBP1Q92547 1522 aa31.22■■■□□ 2.59
HPS4-210ENST00000473782 PRDM2Q13029 1718 aa31.2■■■□□ 2.58
HPS4-210ENST00000473782 ARAP1Q96P48 1450 aa31.18■■■□□ 2.58
HPS4-210ENST00000473782 EIF4G3O43432 1585 aaKnown RBP31.16■■■□□ 2.58
HPS4-210ENST00000473782 TRHP20396 242 aaPredicted RBP31.13■■■□□ 2.57
HPS4-210ENST00000473782 CCDC88BA6NC98 1476 aa31.12■■■□□ 2.57
HPS4-210ENST00000473782 AQRO60306 1485 aaKnown RBP eCLIP31.08■■■□□ 2.57
HPS4-210ENST00000473782 CHD1O14646 1710 aa31.04■■■□□ 2.56
HPS4-210ENST00000473782 TARBP1Q13395 1621 aaKnown RBP31.01■■■□□ 2.55
HPS4-210ENST00000473782 ABCC8Q09428 1581 aa31■■■□□ 2.55
HPS4-210ENST00000473782 DNMBPQ6XZF7 1577 aa30.98■■■□□ 2.55
HPS4-210ENST00000473782 FBLN2P98095 1184 aa30.92■■■□□ 2.54
HPS4-210ENST00000473782 POLA1P09884 1462 aaPredicted RBP30.86■■■□□ 2.53
HPS4-210ENST00000473782 RAD54L2Q9Y4B4 1467 aa30.79■■■□□ 2.52
HPS4-210ENST00000473782 CLASP1Q7Z460 1538 aa30.77■■■□□ 2.52
HPS4-210ENST00000473782 TDRD9Q8NDG6 1382 aaKnown RBP30.77■■■□□ 2.52
HPS4-210ENST00000473782 AEBP2Q6ZN18 517 aaPredicted RBP30.73■■■□□ 2.51
HPS4-210ENST00000473782 SOGA1O94964 1423 aa30.69■■■□□ 2.5
HPS4-210ENST00000473782 SNAPC4Q5SXM2 1469 aa30.69■■■□□ 2.5
HPS4-210ENST00000473782 CHMP7Q8WUX9 453 aaPredicted RBP30.59■■■□□ 2.49
HPS4-210ENST00000473782 SYNJ1O43426 1573 aa30.56■■■□□ 2.48
HPS4-210ENST00000473782 MAGI1Q96QZ7 1491 aaPredicted RBP30.54■■■□□ 2.48
HPS4-210ENST00000473782 FGD5Q6ZNL6 1462 aa30.53■■■□□ 2.48
HPS4-210ENST00000473782 WDR97A6NE52 1622 aa30.53■■■□□ 2.48
HPS4-210ENST00000473782 GRIN2BQ13224 1484 aa30.48■■■□□ 2.47
HPS4-210ENST00000473782 SYNJ2O15056 1496 aa30.47■■■□□ 2.47
HPS4-210ENST00000473782 GAPVD1Q14C86 1478 aa30.46■■■□□ 2.47
HPS4-210ENST00000473782 CUX1P39880 1505 aa30.42■■■□□ 2.46
HPS4-210ENST00000473782 ERCC6L2Q5T890 1561 aa30.28■■■□□ 2.44
HPS4-210ENST00000473782 PBRM1Q86U86 1689 aa30.23■■■□□ 2.43
HPS4-210ENST00000473782 ABCA5Q8WWZ7 1642 aa30.16■■■□□ 2.42
HPS4-210ENST00000473782 ABCA10Q8WWZ4 1543 aa30.16■■■□□ 2.42
HPS4-210ENST00000473782 GRIN2AQ12879 1464 aa30.1■■■□□ 2.41
HPS4-210ENST00000473782 CEP170Q5SW79 1584 aa30.09■■■□□ 2.41
HPS4-210ENST00000473782 NUP160Q12769 1436 aa30.08■■■□□ 2.41
HPS4-210ENST00000473782 SHROOM2Q13796 1616 aa30■■■□□ 2.39
HPS4-210ENST00000473782 KIF13AQ9H1H9 1805 aa29.98■■■□□ 2.39
HPS4-210ENST00000473782 ADAMTS12P58397 1594 aa29.97■■■□□ 2.39
HPS4-210ENST00000473782 FHAD1B1AJZ9 1412 aa29.87■■■□□ 2.37
HPS4-210ENST00000473782 WRNQ14191 1432 aaPredicted RBP eCLIP29.84■■■□□ 2.37
HPS4-210ENST00000473782 PRG4Q92954 1404 aaPredicted RBP29.81■■■□□ 2.36
HPS4-210ENST00000473782 ABCC10Q5T3U5 1492 aa29.79■■■□□ 2.36
HPS4-210ENST00000473782 KDM4FA0A1W2PPD8 638 aa29.78■■■□□ 2.36
HPS4-210ENST00000473782 FAM69CQ0P6D2 419 aa29.78■■■□□ 2.36
HPS4-210ENST00000473782 JPH4Q96JJ6 628 aa29.76■■■□□ 2.35
HPS4-210ENST00000473782 ERICH3Q5RHP9 1530 aa29.71■■■□□ 2.35
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms