RNA–Protein interactions for RNA: ENST00000473099.1

VPS13D-205, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 461 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-205ENST00000473099 NISCHQ9Y2I1 1504 aa29.45■■■□□ 2.3
VPS13D-205ENST00000473099 CCDC180Q9P1Z9 1646 aa25.96■■□□□ 1.75
VPS13D-205ENST00000473099 ZCCHC6Q5VYS8 1495 aaKnown RBP24.72■■□□□ 1.55
VPS13D-205ENST00000473099 ABCC9O60706 1549 aa24.61■■□□□ 1.53
VPS13D-205ENST00000473099 DCAF1Q9Y4B6 1507 aa24.47■■□□□ 1.51
VPS13D-205ENST00000473099 MYO15BQ96JP2 1530 aa24.26■■□□□ 1.47
VPS13D-205ENST00000473099 DCAF8L2P0C7V8 631 aa24.12■■□□□ 1.45
VPS13D-205ENST00000473099 NACADO15069 1562 aa24.12■■□□□ 1.45
VPS13D-205ENST00000473099 RB1CC1Q8TDY2 1594 aa23.93■■□□□ 1.42
VPS13D-205ENST00000473099 SHROOM4Q9ULL8 1493 aa23.67■■□□□ 1.38
VPS13D-205ENST00000473099 SCRIBQ14160 1630 aa23.62■■□□□ 1.37
VPS13D-205ENST00000473099 UNC13AQ9UPW8 1703 aa23.51■■□□□ 1.35
VPS13D-205ENST00000473099 BICRAQ9NZM4 1560 aa23.12■■□□□ 1.29
VPS13D-205ENST00000473099 PABPN1Q86U42 306 aaKnown RBP eCLIP22.85■■□□□ 1.25
VPS13D-205ENST00000473099 DNAJC5BQ9UF47 199 aa22.84■■□□□ 1.25
VPS13D-205ENST00000473099 BAZ1AQ9NRL2 1556 aaPredicted RBP22.81■■□□□ 1.24
VPS13D-205ENST00000473099 CECR2Q9BXF3 1484 aa22.76■■□□□ 1.23
VPS13D-205ENST00000473099 SUPT5HO00267 1087 aaKnown RBP22.72■■□□□ 1.23
VPS13D-205ENST00000473099 SMARCA4P51532 1647 aa22.71■■□□□ 1.23
VPS13D-205ENST00000473099 RSF1Q96T23 1441 aaPredicted RBP22.7■■□□□ 1.22
VPS13D-205ENST00000473099 MROH2BQ7Z745 1585 aa22.67■■□□□ 1.22
VPS13D-205ENST00000473099 WIZO95785 1651 aa22.54■■□□□ 1.2
VPS13D-205ENST00000473099 PEG3Q9GZU2 1588 aa22.49■■□□□ 1.19
VPS13D-205ENST00000473099 EIF4G1Q04637 1599 aaKnown RBP22.45■■□□□ 1.18
VPS13D-205ENST00000473099 SMARCA2P51531 1590 aa22.4■■□□□ 1.18
VPS13D-205ENST00000473099 TOP2AP11388 1531 aaKnown RBP22.36■■□□□ 1.17
VPS13D-205ENST00000473099 ATAD2BQ9ULI0 1458 aa22.28■■□□□ 1.16
VPS13D-205ENST00000473099 CC2D2AQ9P2K1 1620 aa22.27■■□□□ 1.16
VPS13D-205ENST00000473099 HMGXB3Q12766 1538 aa22.21■■□□□ 1.15
VPS13D-205ENST00000473099 BAZ1BQ9UIG0 1483 aaKnown RBP22.19■■□□□ 1.14
VPS13D-205ENST00000473099 NCAPD3P42695 1498 aa22.16■■□□□ 1.14
VPS13D-205ENST00000473099 CCDC88BA6NC98 1476 aa22.02■■□□□ 1.12
VPS13D-205ENST00000473099 PRDM2Q13029 1718 aa21.79■■□□□ 1.08
VPS13D-205ENST00000473099 CHIC1Q5VXU3 224 aa21.74■■□□□ 1.07
VPS13D-205ENST00000473099 CFTRP13569 1480 aa21.62■■□□□ 1.05
VPS13D-205ENST00000473099 CADPSQ9ULU8 1353 aa21.54■■□□□ 1.04
VPS13D-205ENST00000473099 LAMC3Q9Y6N6 1575 aa21.53■■□□□ 1.04
VPS13D-205ENST00000473099 ABCC8Q09428 1581 aa21.49■■□□□ 1.03
VPS13D-205ENST00000473099 TRIM41Q8WV44 630 aa21.47■■□□□ 1.03
VPS13D-205ENST00000473099 WRNQ14191 1432 aaPredicted RBP eCLIP21.42■■□□□ 1.02
VPS13D-205ENST00000473099 BIVM-ERCC5R4GMW8 1640 aa21.38■■□□□ 1.01
VPS13D-205ENST00000473099 TOP2BQ02880 1626 aa21.35■■□□□ 1.01
VPS13D-205ENST00000473099 SYNJ1O43426 1573 aa21.34■■□□□ 1.01
VPS13D-205ENST00000473099 NESP48681 1621 aa21.32■■□□□ 1
VPS13D-205ENST00000473099 FANCD2Q9BXW9 1451 aa21.32■■□□□ 1
VPS13D-205ENST00000473099 ERCC6Q03468 1493 aa21.31■■□□□ 1
VPS13D-205ENST00000473099 PDS5BQ9NTI5 1447 aa21.29■■□□□ 1
VPS13D-205ENST00000473099 KIF21AQ7Z4S6 1674 aa21.25■□□□□ 0.99
VPS13D-205ENST00000473099 CEP164Q9UPV0 1460 aa21.24■□□□□ 0.99
VPS13D-205ENST00000473099 CUX1P39880 1505 aa21.24■□□□□ 0.99
VPS13D-205ENST00000473099 CUX2O14529 1486 aa21.21■□□□□ 0.99
VPS13D-205ENST00000473099 DNMBPQ6XZF7 1577 aa21.19■□□□□ 0.98
VPS13D-205ENST00000473099 EEA1Q15075 1411 aa21.15■□□□□ 0.98
VPS13D-205ENST00000473099 TOPBP1Q92547 1522 aa21.09■□□□□ 0.97
VPS13D-205ENST00000473099 FGD5Q6ZNL6 1462 aa21.03■□□□□ 0.96
VPS13D-205ENST00000473099 URB2Q14146 1524 aaKnown RBP21.03■□□□□ 0.96
VPS13D-205ENST00000473099 MRC2Q9UBG0 1479 aa21.01■□□□□ 0.95
VPS13D-205ENST00000473099 SOGA1O94964 1423 aa21■□□□□ 0.95
VPS13D-205ENST00000473099 THOC2Q8NI27 1593 aaKnown RBP20.99■□□□□ 0.95
VPS13D-205ENST00000473099 DNAJC5Q9H3Z4 198 aa20.96■□□□□ 0.95
VPS13D-205ENST00000473099 POLA1P09884 1462 aaPredicted RBP20.95■□□□□ 0.94
VPS13D-205ENST00000473099 WDR97A6NE52 1622 aa20.94■□□□□ 0.94
VPS13D-205ENST00000473099 FAM9AQ8IZU1 332 aaPredicted RBP20.94■□□□□ 0.94
VPS13D-205ENST00000473099 WDR62O43379 1518 aa20.94■□□□□ 0.94
VPS13D-205ENST00000473099 KIF27Q86VH2 1401 aa20.92■□□□□ 0.94
VPS13D-205ENST00000473099 RUSC2Q8N2Y8 1516 aa20.91■□□□□ 0.94
VPS13D-205ENST00000473099 ABCA10Q8WWZ4 1543 aa20.89■□□□□ 0.94
VPS13D-205ENST00000473099 KIF21BO75037 1637 aa20.89■□□□□ 0.93
VPS13D-205ENST00000473099 CSRNP3Q8WYN3 585 aa20.88■□□□□ 0.93
VPS13D-205ENST00000473099 TARBP1Q13395 1621 aaKnown RBP20.83■□□□□ 0.93
VPS13D-205ENST00000473099 RAD54L2Q9Y4B4 1467 aa20.8■□□□□ 0.92
VPS13D-205ENST00000473099 LOC105371045A0A1W2PR82 267 aa20.79■□□□□ 0.92
VPS13D-205ENST00000473099 GOLGA3Q08378 1498 aa20.78■□□□□ 0.92
VPS13D-205ENST00000473099 ABCA5Q8WWZ7 1642 aa20.78■□□□□ 0.92
VPS13D-205ENST00000473099 ERICH3Q5RHP9 1530 aa20.78■□□□□ 0.92
VPS13D-205ENST00000473099 IFT140Q96RY7 1462 aa20.75■□□□□ 0.91
VPS13D-205ENST00000473099 CUL7Q14999 1698 aa20.74■□□□□ 0.91
VPS13D-205ENST00000473099 PRXQ9BXM0 1461 aa20.72■□□□□ 0.91
VPS13D-205ENST00000473099 PBRM1Q86U86 1689 aa20.7■□□□□ 0.91
VPS13D-205ENST00000473099 GAPVD1Q14C86 1478 aa20.67■□□□□ 0.9
VPS13D-205ENST00000473099 IGF1RP08069 1367 aa20.66■□□□□ 0.9
VPS13D-205ENST00000473099 TNIKQ9UKE5 1360 aa20.66■□□□□ 0.9
VPS13D-205ENST00000473099 RAPGEF2Q9Y4G8 1499 aa20.62■□□□□ 0.89
VPS13D-205ENST00000473099 CARMIL1Q5VZK9 1371 aa20.59■□□□□ 0.89
VPS13D-205ENST00000473099 TDRD9Q8NDG6 1382 aaKnown RBP20.59■□□□□ 0.89
VPS13D-205ENST00000473099 EIF4G3O43432 1585 aaKnown RBP20.58■□□□□ 0.88
VPS13D-205ENST00000473099 UBTFP17480 764 aaKnown RBP20.57■□□□□ 0.88
VPS13D-205ENST00000473099 EHMT2Q96KQ7 1210 aa20.55■□□□□ 0.88
VPS13D-205ENST00000473099 GRIN2BQ13224 1484 aa20.55■□□□□ 0.88
VPS13D-205ENST00000473099 CTTNBP2Q8WZ74 1663 aa20.52■□□□□ 0.88
VPS13D-205ENST00000473099 ZNF608Q9ULD9 1512 aaPredicted RBP20.51■□□□□ 0.87
VPS13D-205ENST00000473099 ADAMTS12P58397 1594 aa20.51■□□□□ 0.87
VPS13D-205ENST00000473099 CEP162Q5TB80 1403 aa20.5■□□□□ 0.87
VPS13D-205ENST00000473099 AQRO60306 1485 aaKnown RBP eCLIP20.5■□□□□ 0.872e-6■■■□□ 15.2
VPS13D-205ENST00000473099 FHAD1B1AJZ9 1412 aa20.45■□□□□ 0.86
VPS13D-205ENST00000473099 MAGI1Q96QZ7 1491 aaPredicted RBP20.44■□□□□ 0.86
VPS13D-205ENST00000473099 CLIP1P30622 1438 aa20.39■□□□□ 0.85
VPS13D-205ENST00000473099 SNAPC4Q5SXM2 1469 aa20.38■□□□□ 0.85
VPS13D-205ENST00000473099 SYNJ2O15056 1496 aa20.32■□□□□ 0.84
VPS13D-205ENST00000473099 EFCAB5A4FU69 1503 aa20.29■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms