RNA–Protein interactions for RNA: ENST00000472729.1

COMMD1-208, Transcript of copper metabolism domain containing 1, humanhuman

TSL 3

Gene COMMD1, Length 629 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD1-208ENST00000472729 NISCHQ9Y2I1 1504 aa47.26■■■■■ 5.16
COMMD1-208ENST00000472729 CCDC180Q9P1Z9 1646 aa42.03■■■■■ 4.32
COMMD1-208ENST00000472729 ABCC9O60706 1549 aa41.73■■■■■ 4.27
COMMD1-208ENST00000472729 DCAF8L2P0C7V8 631 aa40.06■■■■■ 4
COMMD1-208ENST00000472729 RB1CC1Q8TDY2 1594 aa39.91■■■■□ 3.98
COMMD1-208ENST00000472729 NACADO15069 1562 aa39.76■■■■□ 3.95
COMMD1-208ENST00000472729 MYO15BQ96JP2 1530 aa39.35■■■■□ 3.89
COMMD1-208ENST00000472729 ZCCHC6Q5VYS8 1495 aaKnown RBP39.24■■■■□ 3.87
COMMD1-208ENST00000472729 PABPN1Q86U42 306 aaKnown RBP eCLIP39.05■■■■□ 3.84
COMMD1-208ENST00000472729 DCAF1Q9Y4B6 1507 aa39.04■■■■□ 3.84
COMMD1-208ENST00000472729 UNC13AQ9UPW8 1703 aa38.65■■■■□ 3.78
COMMD1-208ENST00000472729 DNAJC5BQ9UF47 199 aa38.6■■■■□ 3.77
COMMD1-208ENST00000472729 BICRAQ9NZM4 1560 aa38.53■■■■□ 3.76
COMMD1-208ENST00000472729 SCRIBQ14160 1630 aa38.45■■■■□ 3.75
COMMD1-208ENST00000472729 SHROOM4Q9ULL8 1493 aa38.26■■■■□ 3.72
COMMD1-208ENST00000472729 EIF4G1Q04637 1599 aaKnown RBP37.68■■■■□ 3.62
COMMD1-208ENST00000472729 CC2D2AQ9P2K1 1620 aa37.6■■■■□ 3.61
COMMD1-208ENST00000472729 CECR2Q9BXF3 1484 aa37.55■■■■□ 3.6
COMMD1-208ENST00000472729 NCAPD3P42695 1498 aa36.73■■■■□ 3.47
COMMD1-208ENST00000472729 BAZ1AQ9NRL2 1556 aaPredicted RBP36.69■■■■□ 3.46
COMMD1-208ENST00000472729 SMARCA4P51532 1647 aa36.68■■■■□ 3.46
COMMD1-208ENST00000472729 ATAD2BQ9ULI0 1458 aa36.68■■■■□ 3.46
COMMD1-208ENST00000472729 SMARCA2P51531 1590 aa36.63■■■■□ 3.45
COMMD1-208ENST00000472729 HMGXB3Q12766 1538 aa36.44■■■■□ 3.42
COMMD1-208ENST00000472729 BAZ1BQ9UIG0 1483 aaKnown RBP36.43■■■■□ 3.42
COMMD1-208ENST00000472729 MROH2BQ7Z745 1585 aa36.4■■■■□ 3.42
COMMD1-208ENST00000472729 PEG3Q9GZU2 1588 aa36.29■■■■□ 3.4
COMMD1-208ENST00000472729 ERCC6Q03468 1493 aa36.11■■■■□ 3.37
COMMD1-208ENST00000472729 RSF1Q96T23 1441 aaPredicted RBP35.92■■■■□ 3.34
COMMD1-208ENST00000472729 WIZO95785 1651 aa35.92■■■■□ 3.34
COMMD1-208ENST00000472729 NESP48681 1621 aa35.91■■■■□ 3.34
COMMD1-208ENST00000472729 LAMC3Q9Y6N6 1575 aa35.76■■■■□ 3.32
COMMD1-208ENST00000472729 CUX2O14529 1486 aa35.73■■■■□ 3.31
COMMD1-208ENST00000472729 CADPSQ9ULU8 1353 aa35.72■■■■□ 3.31
COMMD1-208ENST00000472729 PDS5BQ9NTI5 1447 aa35.72■■■■□ 3.31
COMMD1-208ENST00000472729 TOP2AP11388 1531 aaKnown RBP35.59■■■■□ 3.29
COMMD1-208ENST00000472729 CFTRP13569 1480 aa35.34■■■■□ 3.25
COMMD1-208ENST00000472729 KIF21AQ7Z4S6 1674 aa35.32■■■■□ 3.24
COMMD1-208ENST00000472729 THOC2Q8NI27 1593 aaKnown RBP35.31■■■■□ 3.24
COMMD1-208ENST00000472729 FANCD2Q9BXW9 1451 aa35.27■■■■□ 3.24
COMMD1-208ENST00000472729 MRC2Q9UBG0 1479 aa35.27■■■■□ 3.24
COMMD1-208ENST00000472729 CEP164Q9UPV0 1460 aa35.27■■■■□ 3.24
COMMD1-208ENST00000472729 CCDC88BA6NC98 1476 aa35.23■■■■□ 3.23
COMMD1-208ENST00000472729 DNAJC5Q9H3Z4 198 aa35.17■■■■□ 3.22
COMMD1-208ENST00000472729 WDR62O43379 1518 aa35.06■■■■□ 3.2
COMMD1-208ENST00000472729 SUPT5HO00267 1087 aaKnown RBP35■■■■□ 3.19
COMMD1-208ENST00000472729 URB2Q14146 1524 aaKnown RBP34.85■■■■□ 3.17
COMMD1-208ENST00000472729 PRDM2Q13029 1718 aa34.75■■■■□ 3.15
COMMD1-208ENST00000472729 ABCC8Q09428 1581 aa34.69■■■■□ 3.14
COMMD1-208ENST00000472729 TOPBP1Q92547 1522 aa34.6■■■■□ 3.13
COMMD1-208ENST00000472729 IFT140Q96RY7 1462 aa34.56■■■■□ 3.12
COMMD1-208ENST00000472729 DNMBPQ6XZF7 1577 aa34.5■■■■□ 3.11
COMMD1-208ENST00000472729 OSCARQ8IYS5 282 aa34.39■■■■□ 3.1
COMMD1-208ENST00000472729 ZNF608Q9ULD9 1512 aaPredicted RBP34.35■■■■□ 3.09
COMMD1-208ENST00000472729 POLA1P09884 1462 aaPredicted RBP34.29■■■■□ 3.08
COMMD1-208ENST00000472729 SOGA1O94964 1423 aa34.28■■■■□ 3.08
COMMD1-208ENST00000472729 AQRO60306 1485 aaKnown RBP eCLIP34.2■■■■□ 3.06
COMMD1-208ENST00000472729 RAD54L2Q9Y4B4 1467 aa34.18■■■■□ 3.06
COMMD1-208ENST00000472729 FGD5Q6ZNL6 1462 aa34.17■■■■□ 3.06
COMMD1-208ENST00000472729 CUX1P39880 1505 aa34.16■■■■□ 3.06
COMMD1-208ENST00000472729 TDRD9Q8NDG6 1382 aaKnown RBP34.13■■■■□ 3.05
COMMD1-208ENST00000472729 TARBP1Q13395 1621 aaKnown RBP34.13■■■■□ 3.05
COMMD1-208ENST00000472729 EIF4G3O43432 1585 aaKnown RBP34.12■■■■□ 3.05
COMMD1-208ENST00000472729 FBLN2P98095 1184 aa34.11■■■■□ 3.05
COMMD1-208ENST00000472729 TRIM41Q8WV44 630 aa34■■■■□ 3.03
COMMD1-208ENST00000472729 WRNQ14191 1432 aaPredicted RBP eCLIP33.96■■■■□ 3.03
COMMD1-208ENST00000472729 CHMP7Q8WUX9 453 aaPredicted RBP33.91■■■■□ 3.02
COMMD1-208ENST00000472729 WDR97A6NE52 1622 aa33.9■■■■□ 3.02
COMMD1-208ENST00000472729 GRIN2BQ13224 1484 aa33.87■■■■□ 3.01
COMMD1-208ENST00000472729 SNAPC4Q5SXM2 1469 aa33.83■■■■□ 3.01
COMMD1-208ENST00000472729 GAPVD1Q14C86 1478 aa33.82■■■■□ 3
COMMD1-208ENST00000472729 ABCA10Q8WWZ4 1543 aa33.8■■■■□ 3
COMMD1-208ENST00000472729 MAGI1Q96QZ7 1491 aaPredicted RBP33.78■■■■□ 3
COMMD1-208ENST00000472729 TOP2BQ02880 1626 aa33.75■■■□□ 2.99
COMMD1-208ENST00000472729 SYNJ1O43426 1573 aa33.7■■■□□ 2.99
COMMD1-208ENST00000472729 BIVM-ERCC5R4GMW8 1640 aa33.68■■■□□ 2.98
COMMD1-208ENST00000472729 CHD1O14646 1710 aa33.67■■■□□ 2.98
COMMD1-208ENST00000472729 SYNJ2O15056 1496 aa33.67■■■□□ 2.98
COMMD1-208ENST00000472729 ARHGEF11O15085 1522 aa33.6■■■□□ 2.97
COMMD1-208ENST00000472729 ABCA5Q8WWZ7 1642 aa33.58■■■□□ 2.97
COMMD1-208ENST00000472729 RIMBP3CA6NJZ7 1639 aa33.56■■■□□ 2.96
COMMD1-208ENST00000472729 RIMBP3BA6NNM3 1639 aa33.56■■■□□ 2.96
COMMD1-208ENST00000472729 RIMBP3Q9UFD9 1639 aa33.56■■■□□ 2.96
COMMD1-208ENST00000472729 CYB5RLQ6IPT4 315 aa33.55■■■□□ 2.96
COMMD1-208ENST00000472729 PBRM1Q86U86 1689 aa33.52■■■□□ 2.96
COMMD1-208ENST00000472729 FHAD1B1AJZ9 1412 aa33.44■■■□□ 2.94
COMMD1-208ENST00000472729 ERICH3Q5RHP9 1530 aa33.39■■■□□ 2.94
COMMD1-208ENST00000472729 GRIN2AQ12879 1464 aa33.38■■■□□ 2.93
COMMD1-208ENST00000472729 CLASP1Q7Z460 1538 aa33.38■■■□□ 2.93
COMMD1-208ENST00000472729 ADAMTS12P58397 1594 aa33.33■■■□□ 2.93
COMMD1-208ENST00000472729 KIF27Q86VH2 1401 aa33.32■■■□□ 2.92
COMMD1-208ENST00000472729 ARAP1Q96P48 1450 aa33.28■■■□□ 2.92
COMMD1-208ENST00000472729 NUP160Q12769 1436 aa33.21■■■□□ 2.91
COMMD1-208ENST00000472729 IGF1RP08069 1367 aa33.18■■■□□ 2.9
COMMD1-208ENST00000472729 CEP170Q5SW79 1584 aa33.13■■■□□ 2.89
COMMD1-208ENST00000472729 TRHP20396 242 aaPredicted RBP33.1■■■□□ 2.89
COMMD1-208ENST00000472729 JPH4Q96JJ6 628 aa33.07■■■□□ 2.88
COMMD1-208ENST00000472729 CARMIL1Q5VZK9 1371 aa33.02■■■□□ 2.88
COMMD1-208ENST00000472729 PRG4Q92954 1404 aaPredicted RBP32.97■■■□□ 2.87
COMMD1-208ENST00000472729 CUL7Q14999 1698 aa32.97■■■□□ 2.87
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms