RNA–Protein interactions for RNA: ENST00000471751.5

SNX4-203, Transcript of sorting nexin 4, humanhuman

TSL 2

Gene SNX4, Length 1,308 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX4-203ENST00000471751 NISCHQ9Y2I1 1504 aa44.45■■■■■ 4.71
SNX4-203ENST00000471751 CCDC180Q9P1Z9 1646 aa39.2■■■■□ 3.87
SNX4-203ENST00000471751 ABCC9O60706 1549 aa37.85■■■■□ 3.65
SNX4-203ENST00000471751 ZCCHC6Q5VYS8 1495 aaKnown RBP37.19■■■■□ 3.54
SNX4-203ENST00000471751 DCAF1Q9Y4B6 1507 aa36.97■■■■□ 3.51
SNX4-203ENST00000471751 MYO15BQ96JP2 1530 aa36.86■■■■□ 3.49
SNX4-203ENST00000471751 NACADO15069 1562 aa36.69■■■■□ 3.46
SNX4-203ENST00000471751 DCAF8L2P0C7V8 631 aa36.63■■■■□ 3.45
SNX4-203ENST00000471751 RB1CC1Q8TDY2 1594 aa36.46■■■■□ 3.43
SNX4-203ENST00000471751 SCRIBQ14160 1630 aa35.61■■■■□ 3.29
SNX4-203ENST00000471751 UNC13AQ9UPW8 1703 aa35.53■■■■□ 3.28
SNX4-203ENST00000471751 PABPN1Q86U42 306 aaKnown RBP eCLIP35.47■■■■□ 3.27
SNX4-203ENST00000471751 SHROOM4Q9ULL8 1493 aa35.35■■■■□ 3.25
SNX4-203ENST00000471751 DNAJC5BQ9UF47 199 aa35.25■■■■□ 3.23
SNX4-203ENST00000471751 BICRAQ9NZM4 1560 aa35.23■■■■□ 3.23
SNX4-203ENST00000471751 BAZ1AQ9NRL2 1556 aaPredicted RBP34.43■■■■□ 3.1
SNX4-203ENST00000471751 CECR2Q9BXF3 1484 aa34.4■■■■□ 3.1
SNX4-203ENST00000471751 SMARCA4P51532 1647 aa34.26■■■■□ 3.08
SNX4-203ENST00000471751 EIF4G1Q04637 1599 aaKnown RBP34.26■■■■□ 3.07
SNX4-203ENST00000471751 MROH2BQ7Z745 1585 aa34.17■■■■□ 3.06
SNX4-203ENST00000471751 RSF1Q96T23 1441 aaPredicted RBP34.15■■■■□ 3.06
SNX4-203ENST00000471751 PEG3Q9GZU2 1588 aa34.05■■■■□ 3.04
SNX4-203ENST00000471751 CC2D2AQ9P2K1 1620 aa34.03■■■■□ 3.04
SNX4-203ENST00000471751 SMARCA2P51531 1590 aa33.96■■■■□ 3.03
SNX4-203ENST00000471751 ATAD2BQ9ULI0 1458 aa33.9■■■■□ 3.02
SNX4-203ENST00000471751 NCAPD3P42695 1498 aa33.84■■■■□ 3.01
SNX4-203ENST00000471751 WIZO95785 1651 aa33.82■■■■□ 3
SNX4-203ENST00000471751 SUPT5HO00267 1087 aaKnown RBP33.79■■■■□ 3
SNX4-203ENST00000471751 HMGXB3Q12766 1538 aa33.73■■■□□ 2.99
SNX4-203ENST00000471751 BAZ1BQ9UIG0 1483 aaKnown RBP33.65■■■□□ 2.98
SNX4-203ENST00000471751 TOP2AP11388 1531 aaKnown RBP33.61■■■□□ 2.97
SNX4-203ENST00000471751 CCDC88BA6NC98 1476 aa33.19■■■□□ 2.9
SNX4-203ENST00000471751 CADPSQ9ULU8 1353 aa32.87■■■□□ 2.85
SNX4-203ENST00000471751 CFTRP13569 1480 aa32.85■■■□□ 2.85
SNX4-203ENST00000471751 LAMC3Q9Y6N6 1575 aa32.79■■■□□ 2.84
SNX4-203ENST00000471751 PRDM2Q13029 1718 aa32.65■■■□□ 2.82
SNX4-203ENST00000471751 ERCC6Q03468 1493 aa32.63■■■□□ 2.81
SNX4-203ENST00000471751 NESP48681 1621 aa32.6■■■□□ 2.81
SNX4-203ENST00000471751 PDS5BQ9NTI5 1447 aa32.56■■■□□ 2.8
SNX4-203ENST00000471751 FANCD2Q9BXW9 1451 aa32.41■■■□□ 2.78
SNX4-203ENST00000471751 DNAJC5Q9H3Z4 198 aa32.36■■■□□ 2.77
SNX4-203ENST00000471751 CEP164Q9UPV0 1460 aa32.3■■■□□ 2.76
SNX4-203ENST00000471751 CUX2O14529 1486 aa32.28■■■□□ 2.76
SNX4-203ENST00000471751 ABCC8Q09428 1581 aa32.23■■■□□ 2.75
SNX4-203ENST00000471751 KIF21AQ7Z4S6 1674 aa32.21■■■□□ 2.75
SNX4-203ENST00000471751 WRNQ14191 1432 aaPredicted RBP eCLIP32.2■■■□□ 2.75
SNX4-203ENST00000471751 CHIC1Q5VXU3 224 aa32.15■■■□□ 2.74
SNX4-203ENST00000471751 MRC2Q9UBG0 1479 aa32.09■■■□□ 2.73
SNX4-203ENST00000471751 TOP2BQ02880 1626 aa32.05■■■□□ 2.72
SNX4-203ENST00000471751 DNMBPQ6XZF7 1577 aa32.05■■■□□ 2.72
SNX4-203ENST00000471751 BIVM-ERCC5R4GMW8 1640 aa32.03■■■□□ 2.72
SNX4-203ENST00000471751 TRIM41Q8WV44 630 aa32.01■■■□□ 2.72
SNX4-203ENST00000471751 CUX1P39880 1505 aa32.01■■■□□ 2.72
SNX4-203ENST00000471751 URB2Q14146 1524 aaKnown RBP31.99■■■□□ 2.71
SNX4-203ENST00000471751 TOPBP1Q92547 1522 aa31.99■■■□□ 2.71
SNX4-203ENST00000471751 THOC2Q8NI27 1593 aaKnown RBP31.98■■■□□ 2.71
SNX4-203ENST00000471751 WDR62O43379 1518 aa31.96■■■□□ 2.71
SNX4-203ENST00000471751 SYNJ1O43426 1573 aa31.96■■■□□ 2.71
SNX4-203ENST00000471751 FGD5Q6ZNL6 1462 aa31.78■■■□□ 2.68
SNX4-203ENST00000471751 POLA1P09884 1462 aaPredicted RBP31.77■■■□□ 2.68
SNX4-203ENST00000471751 SOGA1O94964 1423 aa31.69■■■□□ 2.66
SNX4-203ENST00000471751 IFT140Q96RY7 1462 aa31.65■■■□□ 2.66
SNX4-203ENST00000471751 ABCA10Q8WWZ4 1543 aa31.62■■■□□ 2.65
SNX4-203ENST00000471751 TARBP1Q13395 1621 aaKnown RBP31.57■■■□□ 2.65
SNX4-203ENST00000471751 EEA1Q15075 1411 aa31.57■■■□□ 2.64
SNX4-203ENST00000471751 WDR97A6NE52 1622 aa31.56■■■□□ 2.64
SNX4-203ENST00000471751 RAD54L2Q9Y4B4 1467 aa31.54■■■□□ 2.64
SNX4-203ENST00000471751 KIF27Q86VH2 1401 aa31.5■■■□□ 2.63
SNX4-203ENST00000471751 ABCA5Q8WWZ7 1642 aa31.35■■■□□ 2.61
SNX4-203ENST00000471751 GAPVD1Q14C86 1478 aa31.33■■■□□ 2.61
SNX4-203ENST00000471751 TDRD9Q8NDG6 1382 aaKnown RBP31.32■■■□□ 2.6
SNX4-203ENST00000471751 CSRNP3Q8WYN3 585 aa31.3■■■□□ 2.6
SNX4-203ENST00000471751 ERICH3Q5RHP9 1530 aa31.28■■■□□ 2.6
SNX4-203ENST00000471751 RUSC2Q8N2Y8 1516 aa31.28■■■□□ 2.6
SNX4-203ENST00000471751 ZNF608Q9ULD9 1512 aaPredicted RBP31.27■■■□□ 2.6
SNX4-203ENST00000471751 IGF1RP08069 1367 aa31.26■■■□□ 2.59
SNX4-203ENST00000471751 AQRO60306 1485 aaKnown RBP eCLIP31.24■■■□□ 2.591e-6■■■■□ 26.1
SNX4-203ENST00000471751 GRIN2BQ13224 1484 aa31.24■■■□□ 2.59
SNX4-203ENST00000471751 EIF4G3O43432 1585 aaKnown RBP31.22■■■□□ 2.59
SNX4-203ENST00000471751 PBRM1Q86U86 1689 aa31.14■■■□□ 2.58
SNX4-203ENST00000471751 CUL7Q14999 1698 aa31.14■■■□□ 2.58
SNX4-203ENST00000471751 FAM9AQ8IZU1 332 aaPredicted RBP31.13■■■□□ 2.57
SNX4-203ENST00000471751 MAGI1Q96QZ7 1491 aaPredicted RBP31.1■■■□□ 2.57
SNX4-203ENST00000471751 PRXQ9BXM0 1461 aa31.1■■■□□ 2.57
SNX4-203ENST00000471751 CARMIL1Q5VZK9 1371 aa31.08■■■□□ 2.57
SNX4-203ENST00000471751 OSCARQ8IYS5 282 aa31.07■■■□□ 2.56
SNX4-203ENST00000471751 FHAD1B1AJZ9 1412 aa31.05■■■□□ 2.56
SNX4-203ENST00000471751 KIF21BO75037 1637 aa31.05■■■□□ 2.56
SNX4-203ENST00000471751 RAPGEF2Q9Y4G8 1499 aa31■■■□□ 2.55
SNX4-203ENST00000471751 SNAPC4Q5SXM2 1469 aa30.97■■■□□ 2.55
SNX4-203ENST00000471751 ADAMTS12P58397 1594 aa30.96■■■□□ 2.55
SNX4-203ENST00000471751 SYNJ2O15056 1496 aa30.93■■■□□ 2.54
SNX4-203ENST00000471751 GOLGA3Q08378 1498 aa30.93■■■□□ 2.54
SNX4-203ENST00000471751 FBLN2P98095 1184 aa30.85■■■□□ 2.53
SNX4-203ENST00000471751 CHMP7Q8WUX9 453 aaPredicted RBP30.85■■■□□ 2.53
SNX4-203ENST00000471751 GRIN2AQ12879 1464 aa30.8■■■□□ 2.52
SNX4-203ENST00000471751 TNIKQ9UKE5 1360 aa30.75■■■□□ 2.51
SNX4-203ENST00000471751 UBTFP17480 764 aaKnown RBP30.73■■■□□ 2.51
SNX4-203ENST00000471751 LOC105371045A0A1W2PR82 267 aa30.72■■■□□ 2.51
SNX4-203ENST00000471751 NUP160Q12769 1436 aa30.67■■■□□ 2.5
Retrieved 100 of 20,778 RNA–protein pairs in 53.5 ms