RNA–Protein interactions for RNA: ENST00000471158.1

RFT1-204, Transcript of RFT1 homolog, humanhuman

TSL 3

Gene RFT1, Length 924 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFT1-204ENST00000471158 NISCHQ9Y2I1 1504 aa27.46■■□□□ 1.99
RFT1-204ENST00000471158 CCDC180Q9P1Z9 1646 aa24.06■■□□□ 1.44
RFT1-204ENST00000471158 ZCCHC6Q5VYS8 1495 aaKnown RBP23.03■■□□□ 1.28
RFT1-204ENST00000471158 DCAF1Q9Y4B6 1507 aa22.77■■□□□ 1.24
RFT1-204ENST00000471158 ABCC9O60706 1549 aa22.74■■□□□ 1.23
RFT1-204ENST00000471158 AEBP2Q6ZN18 517 aaPredicted RBP22.68■■□□□ 1.22
RFT1-204ENST00000471158 DCAF8L2P0C7V8 631 aa22.67■■□□□ 1.22
RFT1-204ENST00000471158 MYO15BQ96JP2 1530 aa22.58■■□□□ 1.21
RFT1-204ENST00000471158 NACADO15069 1562 aa22.45■■□□□ 1.18
RFT1-204ENST00000471158 RB1CC1Q8TDY2 1594 aa22.27■■□□□ 1.16
RFT1-204ENST00000471158 SHROOM4Q9ULL8 1493 aa22.18■■□□□ 1.14
RFT1-204ENST00000471158 SCRIBQ14160 1630 aa21.99■■□□□ 1.11
RFT1-204ENST00000471158 UNC13AQ9UPW8 1703 aa21.7■■□□□ 1.06
RFT1-204ENST00000471158 BICRAQ9NZM4 1560 aa21.5■■□□□ 1.03
RFT1-204ENST00000471158 PABPN1Q86U42 306 aaKnown RBP eCLIP21.4■■□□□ 1.02
RFT1-204ENST00000471158 SUPT5HO00267 1087 aaKnown RBP21.33■■□□□ 1.01
RFT1-204ENST00000471158 CECR2Q9BXF3 1484 aa21.26■□□□□ 0.99
RFT1-204ENST00000471158 BAZ1AQ9NRL2 1556 aaPredicted RBP21.24■□□□□ 0.99
RFT1-204ENST00000471158 RSF1Q96T23 1441 aaPredicted RBP21.22■□□□□ 0.99
RFT1-204ENST00000471158 CHIC1Q5VXU3 224 aa21.18■□□□□ 0.98
RFT1-204ENST00000471158 MROH2BQ7Z745 1585 aa21.14■□□□□ 0.98
RFT1-204ENST00000471158 SMARCA4P51532 1647 aa21.12■□□□□ 0.97
RFT1-204ENST00000471158 WIZO95785 1651 aa20.96■□□□□ 0.95
RFT1-204ENST00000471158 EIF4G1Q04637 1599 aaKnown RBP20.9■□□□□ 0.94
RFT1-204ENST00000471158 PEG3Q9GZU2 1588 aa20.9■□□□□ 0.94
RFT1-204ENST00000471158 SMARCA2P51531 1590 aa20.86■□□□□ 0.93
RFT1-204ENST00000471158 TOP2AP11388 1531 aaKnown RBP20.82■□□□□ 0.92
RFT1-204ENST00000471158 ATAD2BQ9ULI0 1458 aa20.81■□□□□ 0.92
RFT1-204ENST00000471158 BAZ1BQ9UIG0 1483 aaKnown RBP20.7■□□□□ 0.9
RFT1-204ENST00000471158 NCAPD3P42695 1498 aa20.69■□□□□ 0.9
RFT1-204ENST00000471158 HMGXB3Q12766 1538 aa20.66■□□□□ 0.9
RFT1-204ENST00000471158 CC2D2AQ9P2K1 1620 aa20.61■□□□□ 0.89
RFT1-204ENST00000471158 CCDC88BA6NC98 1476 aa20.56■□□□□ 0.88
RFT1-204ENST00000471158 CFTRP13569 1480 aa20.18■□□□□ 0.82
RFT1-204ENST00000471158 TRIM41Q8WV44 630 aa20.15■□□□□ 0.82
RFT1-204ENST00000471158 CADPSQ9ULU8 1353 aa20.15■□□□□ 0.82
RFT1-204ENST00000471158 DNAJC5BQ9UF47 199 aa20.1■□□□□ 0.81
RFT1-204ENST00000471158 PRDM2Q13029 1718 aa20.08■□□□□ 0.81
RFT1-204ENST00000471158 ABCC8Q09428 1581 aa20.03■□□□□ 0.8
RFT1-204ENST00000471158 LAMC3Q9Y6N6 1575 aa20.02■□□□□ 0.8
RFT1-204ENST00000471158 WRNQ14191 1432 aaPredicted RBP eCLIP20.01■□□□□ 0.79
RFT1-204ENST00000471158 PDS5BQ9NTI5 1447 aa19.9■□□□□ 0.78
RFT1-204ENST00000471158 NESP48681 1621 aa19.89■□□□□ 0.77
RFT1-204ENST00000471158 FANCD2Q9BXW9 1451 aa19.89■□□□□ 0.77
RFT1-204ENST00000471158 SYNJ1O43426 1573 aa19.87■□□□□ 0.77
RFT1-204ENST00000471158 TOP2BQ02880 1626 aa19.86■□□□□ 0.77
RFT1-204ENST00000471158 BIVM-ERCC5R4GMW8 1640 aa19.84■□□□□ 0.77
RFT1-204ENST00000471158 CEP164Q9UPV0 1460 aa19.8■□□□□ 0.76
RFT1-204ENST00000471158 CUX1P39880 1505 aa19.8■□□□□ 0.76
RFT1-204ENST00000471158 EEA1Q15075 1411 aa19.76■□□□□ 0.75
RFT1-204ENST00000471158 DNMBPQ6XZF7 1577 aa19.72■□□□□ 0.75
RFT1-204ENST00000471158 KIF21AQ7Z4S6 1674 aa19.68■□□□□ 0.74
RFT1-204ENST00000471158 FAM9AQ8IZU1 332 aaPredicted RBP19.67■□□□□ 0.74
RFT1-204ENST00000471158 TOPBP1Q92547 1522 aa19.66■□□□□ 0.74
RFT1-204ENST00000471158 SOGA1O94964 1423 aa19.65■□□□□ 0.74
RFT1-204ENST00000471158 URB2Q14146 1524 aaKnown RBP19.61■□□□□ 0.73
RFT1-204ENST00000471158 FGD5Q6ZNL6 1462 aa19.61■□□□□ 0.73
RFT1-204ENST00000471158 MRC2Q9UBG0 1479 aa19.6■□□□□ 0.73
RFT1-204ENST00000471158 ERCC6Q03468 1493 aa19.59■□□□□ 0.73
RFT1-204ENST00000471158 CSRNP3Q8WYN3 585 aa19.58■□□□□ 0.72
RFT1-204ENST00000471158 KIF27Q86VH2 1401 aa19.56■□□□□ 0.72
RFT1-204ENST00000471158 POLA1P09884 1462 aaPredicted RBP19.54■□□□□ 0.72
RFT1-204ENST00000471158 RUSC2Q8N2Y8 1516 aa19.54■□□□□ 0.72
RFT1-204ENST00000471158 LOC105371045A0A1W2PR82 267 aa19.53■□□□□ 0.72
RFT1-204ENST00000471158 WDR62O43379 1518 aa19.49■□□□□ 0.71
RFT1-204ENST00000471158 CUX2O14529 1486 aa19.48■□□□□ 0.71
RFT1-204ENST00000471158 ABCA10Q8WWZ4 1543 aa19.48■□□□□ 0.71
RFT1-204ENST00000471158 RAD54L2Q9Y4B4 1467 aa19.44■□□□□ 0.7
RFT1-204ENST00000471158 SENP3Q9H4L4 574 aaPredicted RBP19.44■□□□□ 0.7
RFT1-204ENST00000471158 KIF21BO75037 1637 aa19.43■□□□□ 0.7
RFT1-204ENST00000471158 THOC2Q8NI27 1593 aaKnown RBP19.41■□□□□ 0.7
RFT1-204ENST00000471158 GOLGA3Q08378 1498 aa19.41■□□□□ 0.7
RFT1-204ENST00000471158 WDR97A6NE52 1622 aa19.38■□□□□ 0.69
RFT1-204ENST00000471158 IFT140Q96RY7 1462 aa19.37■□□□□ 0.69
RFT1-204ENST00000471158 TARBP1Q13395 1621 aaKnown RBP19.36■□□□□ 0.69
RFT1-204ENST00000471158 IGF1RP08069 1367 aa19.35■□□□□ 0.69
RFT1-204ENST00000471158 PRXQ9BXM0 1461 aa19.35■□□□□ 0.69
RFT1-204ENST00000471158 ERICH3Q5RHP9 1530 aa19.34■□□□□ 0.69
RFT1-204ENST00000471158 EHMT2Q96KQ7 1210 aa19.33■□□□□ 0.68
RFT1-204ENST00000471158 TNIKQ9UKE5 1360 aa19.32■□□□□ 0.68
RFT1-204ENST00000471158 UBTFP17480 764 aaKnown RBP19.31■□□□□ 0.68
RFT1-204ENST00000471158 ABCA5Q8WWZ7 1642 aa19.3■□□□□ 0.68
RFT1-204ENST00000471158 GAPVD1Q14C86 1478 aa19.29■□□□□ 0.68
RFT1-204ENST00000471158 TDRD9Q8NDG6 1382 aaKnown RBP19.28■□□□□ 0.68
RFT1-204ENST00000471158 CARMIL1Q5VZK9 1371 aa19.27■□□□□ 0.68
RFT1-204ENST00000471158 RAPGEF2Q9Y4G8 1499 aa19.27■□□□□ 0.67
RFT1-204ENST00000471158 CUL7Q14999 1698 aa19.26■□□□□ 0.67
RFT1-204ENST00000471158 GRIN2BQ13224 1484 aa19.19■□□□□ 0.66
RFT1-204ENST00000471158 AQRO60306 1485 aaKnown RBP eCLIP19.17■□□□□ 0.66
RFT1-204ENST00000471158 PBRM1Q86U86 1689 aa19.17■□□□□ 0.66
RFT1-204ENST00000471158 CEP162Q5TB80 1403 aa19.16■□□□□ 0.66
RFT1-204ENST00000471158 ZNF608Q9ULD9 1512 aaPredicted RBP19.15■□□□□ 0.66
RFT1-204ENST00000471158 EIF4G3O43432 1585 aaKnown RBP19.12■□□□□ 0.65
RFT1-204ENST00000471158 PHF23Q9BUL5 403 aaPredicted RBP19.12■□□□□ 0.65
RFT1-204ENST00000471158 FHAD1B1AJZ9 1412 aa19.11■□□□□ 0.65
RFT1-204ENST00000471158 CLIP1P30622 1438 aa19.07■□□□□ 0.64
RFT1-204ENST00000471158 ADAMTS12P58397 1594 aa19.06■□□□□ 0.64
RFT1-204ENST00000471158 MAGI1Q96QZ7 1491 aaPredicted RBP19.05■□□□□ 0.64
RFT1-204ENST00000471158 SNAPC4Q5SXM2 1469 aa19.03■□□□□ 0.64
RFT1-204ENST00000471158 CTTNBP2Q8WZ74 1663 aa18.98■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms