RNA–Protein interactions for RNA: ENST00000470710.1

HDLBP-233, Transcript of high density lipoprotein binding protein, humanhuman

TSL 2

Gene HDLBP, Length 578 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDLBP-233ENST00000470710 NISCHQ9Y2I1 1504 aa20.2■□□□□ 0.82
HDLBP-233ENST00000470710 CCDC180Q9P1Z9 1646 aa17.69■□□□□ 0.42
HDLBP-233ENST00000470710 ZCCHC6Q5VYS8 1495 aaKnown RBP16.94■□□□□ 0.3
HDLBP-233ENST00000470710 ABCC9O60706 1549 aa16.87■□□□□ 0.29
HDLBP-233ENST00000470710 DCAF1Q9Y4B6 1507 aa16.76■□□□□ 0.27
HDLBP-233ENST00000470710 MYO15BQ96JP2 1530 aa16.66■□□□□ 0.26
HDLBP-233ENST00000470710 DCAF8L2P0C7V8 631 aa16.65■□□□□ 0.26
HDLBP-233ENST00000470710 AEBP2Q6ZN18 517 aaPredicted RBP16.61■□□□□ 0.25
HDLBP-233ENST00000470710 NACADO15069 1562 aa16.56■□□□□ 0.24
HDLBP-233ENST00000470710 RB1CC1Q8TDY2 1594 aa16.44■□□□□ 0.22
HDLBP-233ENST00000470710 SHROOM4Q9ULL8 1493 aa16.23■□□□□ 0.19
HDLBP-233ENST00000470710 SCRIBQ14160 1630 aa16.19■□□□□ 0.18
HDLBP-233ENST00000470710 UNC13AQ9UPW8 1703 aa15.97■□□□□ 0.15
HDLBP-233ENST00000470710 BICRAQ9NZM4 1560 aa15.92■□□□□ 0.14
HDLBP-233ENST00000470710 PABPN1Q86U42 306 aaKnown RBP eCLIP15.86■□□□□ 0.13
HDLBP-233ENST00000470710 CHIC1Q5VXU3 224 aa15.76■□□□□ 0.11
HDLBP-233ENST00000470710 CECR2Q9BXF3 1484 aa15.68■□□□□ 0.1
HDLBP-233ENST00000470710 BAZ1AQ9NRL2 1556 aaPredicted RBP15.62■□□□□ 0.09
HDLBP-233ENST00000470710 RSF1Q96T23 1441 aaPredicted RBP15.6■□□□□ 0.09
HDLBP-233ENST00000470710 MROH2BQ7Z745 1585 aa15.57■□□□□ 0.08
HDLBP-233ENST00000470710 SMARCA4P51532 1647 aa15.54■□□□□ 0.08
HDLBP-233ENST00000470710 SUPT5HO00267 1087 aaKnown RBP15.54■□□□□ 0.08
HDLBP-233ENST00000470710 EIF4G1Q04637 1599 aaKnown RBP15.46■□□□□ 0.07
HDLBP-233ENST00000470710 PEG3Q9GZU2 1588 aa15.41■□□□□ 0.06
HDLBP-233ENST00000470710 ATAD2BQ9ULI0 1458 aa15.38■□□□□ 0.05
HDLBP-233ENST00000470710 WIZO95785 1651 aa15.38■□□□□ 0.05
HDLBP-233ENST00000470710 SMARCA2P51531 1590 aa15.36■□□□□ 0.05
HDLBP-233ENST00000470710 NCAPD3P42695 1498 aa15.3■□□□□ 0.04
HDLBP-233ENST00000470710 TOP2AP11388 1531 aaKnown RBP15.29■□□□□ 0.04
HDLBP-233ENST00000470710 CC2D2AQ9P2K1 1620 aa15.26■□□□□ 0.03
HDLBP-233ENST00000470710 BAZ1BQ9UIG0 1483 aaKnown RBP15.26■□□□□ 0.03
HDLBP-233ENST00000470710 HMGXB3Q12766 1538 aa15.25■□□□□ 0.03
HDLBP-233ENST00000470710 CCDC88BA6NC98 1476 aa15.12■□□□□ 0.01
HDLBP-233ENST00000470710 DNAJC5BQ9UF47 199 aa15.06■□□□□ 0
HDLBP-233ENST00000470710 CFTRP13569 1480 aa14.89□□□□□ -0.03
HDLBP-233ENST00000470710 CADPSQ9ULU8 1353 aa14.88□□□□□ -0.03
HDLBP-233ENST00000470710 LAMC3Q9Y6N6 1575 aa14.77□□□□□ -0.04
HDLBP-233ENST00000470710 NESP48681 1621 aa14.74□□□□□ -0.05
HDLBP-233ENST00000470710 PRDM2Q13029 1718 aa14.7□□□□□ -0.06
HDLBP-233ENST00000470710 PDS5BQ9NTI5 1447 aa14.7□□□□□ -0.06
HDLBP-233ENST00000470710 FANCD2Q9BXW9 1451 aa14.69□□□□□ -0.06
HDLBP-233ENST00000470710 WRNQ14191 1432 aaPredicted RBP eCLIP14.68□□□□□ -0.06
HDLBP-233ENST00000470710 TRIM41Q8WV44 630 aa14.67□□□□□ -0.06
HDLBP-233ENST00000470710 ABCC8Q09428 1581 aa14.67□□□□□ -0.06
HDLBP-233ENST00000470710 CEP164Q9UPV0 1460 aa14.62□□□□□ -0.07
HDLBP-233ENST00000470710 CUX1P39880 1505 aa14.58□□□□□ -0.08
HDLBP-233ENST00000470710 SYNJ1O43426 1573 aa14.58□□□□□ -0.08
HDLBP-233ENST00000470710 TOP2BQ02880 1626 aa14.57□□□□□ -0.08
HDLBP-233ENST00000470710 BIVM-ERCC5R4GMW8 1640 aa14.54□□□□□ -0.08
HDLBP-233ENST00000470710 DNMBPQ6XZF7 1577 aa14.52□□□□□ -0.08
HDLBP-233ENST00000470710 KIF21AQ7Z4S6 1674 aa14.52□□□□□ -0.09
HDLBP-233ENST00000470710 URB2Q14146 1524 aaKnown RBP14.51□□□□□ -0.09
HDLBP-233ENST00000470710 TOPBP1Q92547 1522 aa14.51□□□□□ -0.09
HDLBP-233ENST00000470710 ERCC6Q03468 1493 aa14.5□□□□□ -0.09
HDLBP-233ENST00000470710 MRC2Q9UBG0 1479 aa14.5□□□□□ -0.09
HDLBP-233ENST00000470710 FGD5Q6ZNL6 1462 aa14.44□□□□□ -0.1
HDLBP-233ENST00000470710 WDR62O43379 1518 aa14.43□□□□□ -0.1
HDLBP-233ENST00000470710 POLA1P09884 1462 aaPredicted RBP14.43□□□□□ -0.1
HDLBP-233ENST00000470710 EEA1Q15075 1411 aa14.41□□□□□ -0.1
HDLBP-233ENST00000470710 THOC2Q8NI27 1593 aaKnown RBP14.4□□□□□ -0.1
HDLBP-233ENST00000470710 SOGA1O94964 1423 aa14.4□□□□□ -0.1
HDLBP-233ENST00000470710 ABCA10Q8WWZ4 1543 aa14.36□□□□□ -0.11
HDLBP-233ENST00000470710 KIF27Q86VH2 1401 aa14.34□□□□□ -0.11
HDLBP-233ENST00000470710 RAD54L2Q9Y4B4 1467 aa14.34□□□□□ -0.11
HDLBP-233ENST00000470710 CUX2O14529 1486 aa14.33□□□□□ -0.12
HDLBP-233ENST00000470710 RUSC2Q8N2Y8 1516 aa14.32□□□□□ -0.12
HDLBP-233ENST00000470710 FAM9AQ8IZU1 332 aaPredicted RBP14.32□□□□□ -0.12
HDLBP-233ENST00000470710 IFT140Q96RY7 1462 aa14.31□□□□□ -0.12
HDLBP-233ENST00000470710 CSRNP3Q8WYN3 585 aa14.3□□□□□ -0.12
HDLBP-233ENST00000470710 TARBP1Q13395 1621 aaKnown RBP14.29□□□□□ -0.12
HDLBP-233ENST00000470710 WDR97A6NE52 1622 aa14.26□□□□□ -0.13
HDLBP-233ENST00000470710 IGF1RP08069 1367 aa14.24□□□□□ -0.13
HDLBP-233ENST00000470710 TDRD9Q8NDG6 1382 aaKnown RBP14.23□□□□□ -0.13
HDLBP-233ENST00000470710 ABCA5Q8WWZ7 1642 aa14.22□□□□□ -0.13
HDLBP-233ENST00000470710 GAPVD1Q14C86 1478 aa14.21□□□□□ -0.13
HDLBP-233ENST00000470710 PRXQ9BXM0 1461 aa14.2□□□□□ -0.14
HDLBP-233ENST00000470710 LOC105371045A0A1W2PR82 267 aa14.19□□□□□ -0.14
HDLBP-233ENST00000470710 ERICH3Q5RHP9 1530 aa14.18□□□□□ -0.14
HDLBP-233ENST00000470710 ZNF608Q9ULD9 1512 aaPredicted RBP14.18□□□□□ -0.14
HDLBP-233ENST00000470710 KIF21BO75037 1637 aa14.18□□□□□ -0.14
HDLBP-233ENST00000470710 AQRO60306 1485 aaKnown RBP eCLIP14.18□□□□□ -0.142e-8■■□□□ 14.3
HDLBP-233ENST00000470710 CARMIL1Q5VZK9 1371 aa14.16□□□□□ -0.14
HDLBP-233ENST00000470710 GOLGA3Q08378 1498 aa14.16□□□□□ -0.14
HDLBP-233ENST00000470710 GRIN2BQ13224 1484 aa14.15□□□□□ -0.14
HDLBP-233ENST00000470710 RAPGEF2Q9Y4G8 1499 aa14.12□□□□□ -0.15
HDLBP-233ENST00000470710 EIF4G3O43432 1585 aaKnown RBP14.12□□□□□ -0.15
HDLBP-233ENST00000470710 CUL7Q14999 1698 aa14.11□□□□□ -0.15
HDLBP-233ENST00000470710 SENP3Q9H4L4 574 aaPredicted RBP14.1□□□□□ -0.15
HDLBP-233ENST00000470710 TNIKQ9UKE5 1360 aa14.09□□□□□ -0.15
HDLBP-233ENST00000470710 FHAD1B1AJZ9 1412 aa14.08□□□□□ -0.15
HDLBP-233ENST00000470710 EHMT2Q96KQ7 1210 aa14.07□□□□□ -0.16
HDLBP-233ENST00000470710 PBRM1Q86U86 1689 aa14.07□□□□□ -0.16
HDLBP-233ENST00000470710 MAGI1Q96QZ7 1491 aaPredicted RBP14.06□□□□□ -0.16
HDLBP-233ENST00000470710 UBTFP17480 764 aaKnown RBP14.06□□□□□ -0.16
HDLBP-233ENST00000470710 SNAPC4Q5SXM2 1469 aa14.06□□□□□ -0.16
HDLBP-233ENST00000470710 ADAMTS12P58397 1594 aa14.05□□□□□ -0.16
HDLBP-233ENST00000470710 SYNJ2O15056 1496 aa13.99□□□□□ -0.17
HDLBP-233ENST00000470710 CEP162Q5TB80 1403 aa13.98□□□□□ -0.17
HDLBP-233ENST00000470710 GRIN2AQ12879 1464 aa13.96□□□□□ -0.17
HDLBP-233ENST00000470710 CHMP7Q8WUX9 453 aaPredicted RBP13.95□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms