RNA–Protein interactions for RNA: ENST00000470588.1

SMARCD3-206, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3, humanhuman

TSL 2

Gene SMARCD3, Length 1,755 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD3-206ENST00000470588 NISCHQ9Y2I1 1504 aa37.55■■■■□ 3.6
SMARCD3-206ENST00000470588 CCDC180Q9P1Z9 1646 aa32.88■■■□□ 2.85
SMARCD3-206ENST00000470588 ZCCHC6Q5VYS8 1495 aaKnown RBP31.55■■■□□ 2.64
SMARCD3-206ENST00000470588 DCAF1Q9Y4B6 1507 aa31.1■■■□□ 2.57
SMARCD3-206ENST00000470588 DCAF8L2P0C7V8 631 aa31■■■□□ 2.55
SMARCD3-206ENST00000470588 ABCC9O60706 1549 aa30.99■■■□□ 2.55
SMARCD3-206ENST00000470588 MYO15BQ96JP2 1530 aa30.75■■■□□ 2.51
SMARCD3-206ENST00000470588 SHROOM4Q9ULL8 1493 aa30.6■■■□□ 2.49
SMARCD3-206ENST00000470588 NACADO15069 1562 aa30.59■■■□□ 2.49
SMARCD3-206ENST00000470588 RB1CC1Q8TDY2 1594 aa30.36■■■□□ 2.45
SMARCD3-206ENST00000470588 SCRIBQ14160 1630 aa30.15■■■□□ 2.42
SMARCD3-206ENST00000470588 SUPT5HO00267 1087 aaKnown RBP29.75■■■□□ 2.35
SMARCD3-206ENST00000470588 UNC13AQ9UPW8 1703 aa29.7■■■□□ 2.35
SMARCD3-206ENST00000470588 BICRAQ9NZM4 1560 aa29.32■■■□□ 2.28
SMARCD3-206ENST00000470588 PABPN1Q86U42 306 aaKnown RBP eCLIP29.16■■■□□ 2.26
SMARCD3-206ENST00000470588 CECR2Q9BXF3 1484 aa29.1■■■□□ 2.25
SMARCD3-206ENST00000470588 RSF1Q96T23 1441 aaPredicted RBP29.07■■■□□ 2.24
SMARCD3-206ENST00000470588 BAZ1AQ9NRL2 1556 aaPredicted RBP29.06■■■□□ 2.24
SMARCD3-206ENST00000470588 MROH2BQ7Z745 1585 aa28.97■■■□□ 2.23
SMARCD3-206ENST00000470588 SMARCA4P51532 1647 aa28.91■■■□□ 2.22
SMARCD3-206ENST00000470588 WIZO95785 1651 aa28.77■■■□□ 2.2
SMARCD3-206ENST00000470588 CHIC1Q5VXU3 224 aa28.75■■■□□ 2.19
SMARCD3-206ENST00000470588 PEG3Q9GZU2 1588 aa28.55■■■□□ 2.16
SMARCD3-206ENST00000470588 TOP2AP11388 1531 aaKnown RBP28.52■■■□□ 2.16
SMARCD3-206ENST00000470588 EIF4G1Q04637 1599 aaKnown RBP28.49■■■□□ 2.15
SMARCD3-206ENST00000470588 SMARCA2P51531 1590 aa28.47■■■□□ 2.15
SMARCD3-206ENST00000470588 ATAD2BQ9ULI0 1458 aa28.39■■■□□ 2.14
SMARCD3-206ENST00000470588 BAZ1BQ9UIG0 1483 aaKnown RBP28.3■■■□□ 2.12
SMARCD3-206ENST00000470588 HMGXB3Q12766 1538 aa28.19■■■□□ 2.1
SMARCD3-206ENST00000470588 NCAPD3P42695 1498 aa28.16■■■□□ 2.1
SMARCD3-206ENST00000470588 CCDC88BA6NC98 1476 aa28.16■■■□□ 2.1
SMARCD3-206ENST00000470588 CC2D2AQ9P2K1 1620 aa28.08■■■□□ 2.09
SMARCD3-206ENST00000470588 TRIM41Q8WV44 630 aa27.96■■■□□ 2.07
SMARCD3-206ENST00000470588 LOC105371045A0A1W2PR82 267 aa27.68■■■□□ 2.02
SMARCD3-206ENST00000470588 ABCC8Q09428 1581 aa27.56■■■□□ 2
SMARCD3-206ENST00000470588 PRDM2Q13029 1718 aa27.53■■■□□ 2
SMARCD3-206ENST00000470588 CFTRP13569 1480 aa27.53■■■□□ 2
SMARCD3-206ENST00000470588 CADPSQ9ULU8 1353 aa27.44■■□□□ 1.98
SMARCD3-206ENST00000470588 FAM9AQ8IZU1 332 aaPredicted RBP27.44■■□□□ 1.98
SMARCD3-206ENST00000470588 WRNQ14191 1432 aaPredicted RBP eCLIP27.42■■□□□ 1.98
SMARCD3-206ENST00000470588 SYNJ1O43426 1573 aa27.29■■□□□ 1.96
SMARCD3-206ENST00000470588 LAMC3Q9Y6N6 1575 aa27.29■■□□□ 1.96
SMARCD3-206ENST00000470588 TOP2BQ02880 1626 aa27.23■■□□□ 1.95
SMARCD3-206ENST00000470588 BIVM-ERCC5R4GMW8 1640 aa27.22■■□□□ 1.95
SMARCD3-206ENST00000470588 DNAJC5BQ9UF47 199 aa27.21■■□□□ 1.95
SMARCD3-206ENST00000470588 NESP48681 1621 aa27.16■■□□□ 1.94
SMARCD3-206ENST00000470588 FANCD2Q9BXW9 1451 aa27.16■■□□□ 1.94
SMARCD3-206ENST00000470588 EEA1Q15075 1411 aa27.15■■□□□ 1.94
SMARCD3-206ENST00000470588 CUX1P39880 1505 aa27.11■■□□□ 1.93
SMARCD3-206ENST00000470588 SOGA1O94964 1423 aa27.08■■□□□ 1.93
SMARCD3-206ENST00000470588 PDS5BQ9NTI5 1447 aa27.06■■□□□ 1.92
SMARCD3-206ENST00000470588 CEP164Q9UPV0 1460 aa27.03■■□□□ 1.92
SMARCD3-206ENST00000470588 CSRNP3Q8WYN3 585 aa27.02■■□□□ 1.92
SMARCD3-206ENST00000470588 EHMT2Q96KQ7 1210 aa27.02■■□□□ 1.92
SMARCD3-206ENST00000470588 DNMBPQ6XZF7 1577 aa26.96■■□□□ 1.91
SMARCD3-206ENST00000470588 RUSC2Q8N2Y8 1516 aa26.93■■□□□ 1.9
SMARCD3-206ENST00000470588 KIF21AQ7Z4S6 1674 aa26.93■■□□□ 1.9
SMARCD3-206ENST00000470588 PCGF6Q9BYE7 350 aa26.92■■□□□ 1.9
SMARCD3-206ENST00000470588 TOPBP1Q92547 1522 aa26.86■■□□□ 1.89
SMARCD3-206ENST00000470588 FGD5Q6ZNL6 1462 aa26.85■■□□□ 1.89
SMARCD3-206ENST00000470588 TNIKQ9UKE5 1360 aa26.83■■□□□ 1.89
SMARCD3-206ENST00000470588 TRIM26Q12899 539 aaPredicted RBP26.83■■□□□ 1.89
SMARCD3-206ENST00000470588 URB2Q14146 1524 aaKnown RBP26.78■■□□□ 1.88
SMARCD3-206ENST00000470588 KIF27Q86VH2 1401 aa26.77■■□□□ 1.88
SMARCD3-206ENST00000470588 GOLGA3Q08378 1498 aa26.76■■□□□ 1.87
SMARCD3-206ENST00000470588 KIF21BO75037 1637 aa26.71■■□□□ 1.87
SMARCD3-206ENST00000470588 POLA1P09884 1462 aaPredicted RBP26.71■■□□□ 1.87
SMARCD3-206ENST00000470588 MRC2Q9UBG0 1479 aa26.71■■□□□ 1.87
SMARCD3-206ENST00000470588 UBTFP17480 764 aaKnown RBP26.7■■□□□ 1.86
SMARCD3-206ENST00000470588 CUX2O14529 1486 aa26.68■■□□□ 1.86
SMARCD3-206ENST00000470588 ERCC6Q03468 1493 aa26.67■■□□□ 1.86
SMARCD3-206ENST00000470588 CEP162Q5TB80 1403 aa26.66■■□□□ 1.86
SMARCD3-206ENST00000470588 ABCA10Q8WWZ4 1543 aa26.62■■□□□ 1.85
SMARCD3-206ENST00000470588 RAD54L2Q9Y4B4 1467 aa26.59■■□□□ 1.85
SMARCD3-206ENST00000470588 WDR97A6NE52 1622 aa26.57■■□□□ 1.84
SMARCD3-206ENST00000470588 WDR62O43379 1518 aa26.56■■□□□ 1.84
SMARCD3-206ENST00000470588 HRCP23327 699 aa26.56■■□□□ 1.84
SMARCD3-206ENST00000470588 ERICH3Q5RHP9 1530 aa26.54■■□□□ 1.84
SMARCD3-206ENST00000470588 PRXQ9BXM0 1461 aa26.51■■□□□ 1.83
SMARCD3-206ENST00000470588 RAPGEF2Q9Y4G8 1499 aa26.48■■□□□ 1.83
SMARCD3-206ENST00000470588 THOC2Q8NI27 1593 aaKnown RBP26.48■■□□□ 1.83
SMARCD3-206ENST00000470588 TARBP1Q13395 1621 aaKnown RBP26.46■■□□□ 1.83
SMARCD3-206ENST00000470588 IGF1RP08069 1367 aa26.44■■□□□ 1.82
SMARCD3-206ENST00000470588 ABCA5Q8WWZ7 1642 aa26.42■■□□□ 1.82
SMARCD3-206ENST00000470588 CUL7Q14999 1698 aa26.39■■□□□ 1.82
SMARCD3-206ENST00000470588 IFT140Q96RY7 1462 aa26.39■■□□□ 1.81
SMARCD3-206ENST00000470588 CLIP1P30622 1438 aa26.36■■□□□ 1.81
SMARCD3-206ENST00000470588 GAPVD1Q14C86 1478 aa26.36■■□□□ 1.81
SMARCD3-206ENST00000470588 CARMIL1Q5VZK9 1371 aa26.36■■□□□ 1.81
SMARCD3-206ENST00000470588 TDRD9Q8NDG6 1382 aaKnown RBP26.33■■□□□ 1.81
SMARCD3-206ENST00000470588 PPARGC1BQ86YN6 1023 aaKnown RBP26.3■■□□□ 1.8
SMARCD3-206ENST00000470588 PBRM1Q86U86 1689 aa26.28■■□□□ 1.8
SMARCD3-206ENST00000470588 VPS8Q8N3P4 1428 aa26.19■■□□□ 1.78
SMARCD3-206ENST00000470588 GRIN2BQ13224 1484 aa26.18■■□□□ 1.78
SMARCD3-206ENST00000470588 AQRO60306 1485 aaKnown RBP eCLIP26.17■■□□□ 1.78
SMARCD3-206ENST00000470588 EIF4G3O43432 1585 aaKnown RBP26.15■■□□□ 1.78
SMARCD3-206ENST00000470588 ZNF608Q9ULD9 1512 aaPredicted RBP26.14■■□□□ 1.78
SMARCD3-206ENST00000470588 CTTNBP2Q8WZ74 1663 aa26.1■■□□□ 1.77
SMARCD3-206ENST00000470588 ADAMTS12P58397 1594 aa26.1■■□□□ 1.77
SMARCD3-206ENST00000470588 FHAD1B1AJZ9 1412 aa26.09■■□□□ 1.77
Retrieved 100 of 20,778 RNA–protein pairs in 82.9 ms